mRNA_P-lacustris_contig1055.513.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1055.513.1
Unique NamemRNA_P-lacustris_contig1055.513.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: A0A835ZG13_9STRA (Tctex-1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG13_9STRA)

HSP 1 Score: 139 bits (349), Expect = 7.210e-40
Identity = 65/96 (67.71%), Postives = 82/96 (85.42%), Query Frame = 1
Query:  133 RPSYRQKASVNTMREIIKGVLESELQGRTYHVDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYIN 420
            +P+YR++ASVN MREII+ +LE +L G+TY  D AT QTK ISD+IK+ LK M+L RYKYVVQV+IGEQRGEGVRMG RCFWD++TD+ ASE++IN
Sbjct:    1 QPAYRKRASVNQMREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFIN 96          
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: A0A7S2S8M8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8M8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.300e-35
Identity = 61/99 (61.62%), Postives = 80/99 (80.81%), Query Frame = 1
Query:  124 YQTRPSYRQKASVNTMREIIKGVLESELQGRTYHVDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYIN 420
            YQ RP+Y+Q+ SV  M+ II  V++ EL+G+TY VDQA VQTK ISD+I+N LKA++LPRYK++VQVV+GE R EGVRMG R FWD+ETD+ A+  Y+N
Sbjct:   10 YQIRPAYKQRVSVAAMKTIIDTVMKEELEGKTYAVDQAQVQTKHISDEIRNRLKALDLPRYKFMVQVVLGEMRLEGVRMGCRTFWDAETDAHATSNYMN 108          
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: D7FHW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW5_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.520e-35
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 1
Query:  226 VDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYINVRLV 432
            +DQATVQTK I D+IKNGLK MNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETD+VASETY+NVR+V
Sbjct:    1 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVRVV 69          
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: A0A7S2BCB7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCB7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.250e-34
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   58 GYLPVCTSAMSGGGAELGQQLMYQTRPSYRQKASVNTMREIIKGVLESELQGRTYHVDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYIN 420
            G +P   + MS       +   YQ RP YRQ+ SVN M+ +IK V++ EL+G+TY  +    QT  I+D I+N L+ +  PRYK+ VQVVIGEQRGEGVRMG R FWD++TD+ ASETY+N
Sbjct:   21 GSVPTAAATMSAAS----KTPTYQIRPEYRQRISVNEMKVVIKSVVKEELEGKTYQTESVQDQTTAIADKIRNRLRDLQKPRYKFFVQVVIGEQRGEGVRMGCRTFWDADTDAYASETYVN 137          
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: A0A6H5L5Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.880e-34
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
Query:  226 VDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYIN 420
            +DQATVQTK I D+IKNGLK MNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETD+VASETY+N
Sbjct:    1 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 65          
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: A0A7S3MAW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAW9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.240e-33
Identity = 62/105 (59.05%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  124 YQTRPSYRQKASVNTMREIIKGVLESELQGRTYHVDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYINVRLVPV 438
            Y   P Y+ K  V   REIIK VL+S+L+   Y+++     TK ++DDIK+ LK + LPRYK VVQV IGEQRG+GVRMGSRCFWDS+TDS ASETY N  LV V
Sbjct:   14 YVIHPEYKNKFRVGPTREIIKEVLQSKLEKAQYNMETTQALTKQVADDIKDRLKDLVLPRYKIVVQVAIGEQRGQGVRMGSRCFWDSDTDSYASETYSNETLVCV 118          
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: F0YJL5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJL5_AURAN)

HSP 1 Score: 118 bits (296), Expect = 1.180e-31
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 1
Query:  118 LMYQTRPSYRQKASVNTMREIIKGVLESELQGRTYHVDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYIN 420
            ++ Q RP+Y  +AS   M+E+IK VL+  L G+TY  DQ   QTK I+D +K+ LK   LPRYK++VQVVIGEQRGEGVRMG R FWD +TD+ ASET+ N
Sbjct:    9 VLSQLRPAYGMRASPTKMKELIKEVLKESLSGQTYQGDQVQQQTKLIADTVKDKLKGELLPRYKFMVQVVIGEQRGEGVRMGCRTFWDRDTDTYASETFTN 109          
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: A0A507FCI1_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507FCI1_9FUNG)

HSP 1 Score: 117 bits (294), Expect = 2.990e-31
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 1
Query:  121 MYQTRPSYRQKASVNTMREIIKGVLESELQGRTYHVDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYINV 423
            +Y  RP+++QK     + ++I  +L   L G TYH D  +  T+ I+D+IKN LK ++LPRYKY+V VVIGE RGEGVRMG RCFWD++TD+VA +T+INV
Sbjct:   11 VYSIRPNFKQKFRPAIVTKLIHQILADRLTGATYHPDTCSQWTREIADEIKNRLKELDLPRYKYLVNVVIGEMRGEGVRMGCRCFWDADTDNVAQDTFINV 111          
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: A0A0G4EWI1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EWI1_VITBC)

HSP 1 Score: 117 bits (292), Expect = 4.620e-31
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  124 YQTRPSYRQKASVNTMREIIKGVLESELQGRTYHVDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYINVRL 429
            Y T PSY+ K     ++EI++ VL ++L    YH DQ  V TK ++D++K+ LK ++LPRYK +VQVVIGEQRG+GVR+GSRCFWD +TD+  SE Y N  L
Sbjct:   10 YITHPSYKDKFRPQPVKEILREVLTAKLDQAQYHADQTPVLTKAVADEVKDRLKELHLPRYKLIVQVVIGEQRGQGVRVGSRCFWDGDTDTCVSEVYRNETL 111          
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Match: A0A812LYX8_9DINO (DYNLT2B protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812LYX8_9DINO)

HSP 1 Score: 116 bits (291), Expect = 6.940e-31
Identity = 57/107 (53.27%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  109 GQQLMYQTRPSYRQKASVNTMREIIKGVLESELQGRTYHVDQATVQTKTISDDIKNGLKAMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYINVRL 429
            G +  Y   P Y+ K      REII+ VL+S+L   TY ++   + TK ++DDIK+ LK +NLPRYK VVQV IGEQ+G+GVRMG+RCFWD +TDS ASE Y N  L
Sbjct:    7 GDENTYVIHPEYKNKFRPGPTREIIRDVLQSKLDKATYSMETTQLLTKQVADDIKDRLKELNLPRYKIVVQVSIGEQKGQGVRMGTRCFWDGDTDSYASEMYCNESL 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1055.513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZG13_9STRA7.210e-4067.71Tctex-1 (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2S8M8_9STRA1.300e-3561.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FHW5_ECTSI1.520e-3588.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BCB7_9STRA1.250e-3451.24Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6H5L5Z1_9PHAE4.880e-3489.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3MAW9_9STRA5.240e-3359.05Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
F0YJL5_AURAN1.180e-3157.43Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A507FCI1_9FUNG2.990e-3153.47Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]
A0A0G4EWI1_VITBC4.620e-3152.94Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A812LYX8_9DINO6.940e-3153.27DYNLT2B protein n=2 Tax=unclassified Symbiodinium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1055contigP-lacustris_contig1055:35403..36710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.8e-27
Seed eggNOG ortholog2880.D7FHW5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of intraciliary retrograde transport
EggNOG OGsKOG4108@1,KOG4108@2759
Ec32 ortholog descriptionTctex-1
Ec32 orthologEc-12_006150.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size442
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1055.513.1prot_P-lacustris_contig1055.513.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1055 35403..36710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.5817375-CDS-P-lacustris_contig1055:35402..355571622815325.5817375-CDS-P-lacustris_contig1055:35402..35557Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1055 35403..35557 -
1693493477.5610082-CDS-P-lacustris_contig1055:35402..355571693493477.5610082-CDS-P-lacustris_contig1055:35402..35557Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1055 35403..35557 -
1622815325.5956142-CDS-P-lacustris_contig1055:35793..358541622815325.5956142-CDS-P-lacustris_contig1055:35793..35854Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1055 35794..35854 -
1693493477.577759-CDS-P-lacustris_contig1055:35793..358541693493477.577759-CDS-P-lacustris_contig1055:35793..35854Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1055 35794..35854 -
1622815325.631429-CDS-P-lacustris_contig1055:36342..364151622815325.631429-CDS-P-lacustris_contig1055:36342..36415Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1055 36343..36415 -
1693493477.5855055-CDS-P-lacustris_contig1055:36342..364151693493477.5855055-CDS-P-lacustris_contig1055:36342..36415Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1055 36343..36415 -
1622815325.6427362-CDS-P-lacustris_contig1055:36558..367101622815325.6427362-CDS-P-lacustris_contig1055:36558..36710Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1055 36559..36710 -
1693493477.5952184-CDS-P-lacustris_contig1055:36558..367101693493477.5952184-CDS-P-lacustris_contig1055:36558..36710Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1055 36559..36710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1055.513.1

>prot_P-lacustris_contig1055.513.1 ID=prot_P-lacustris_contig1055.513.1|Name=mRNA_P-lacustris_contig1055.513.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=147bp
TSSRERRAKSYPCLYLSIQGYLPVCTSAMSGGGAELGQQLMYQTRPSYRQ
KASVNTMREIIKGVLESELQGRTYHVDQATVQTKTISDDIKNGLKAMNLP
RYKYVVQVVIGEQRGEGVRMGSRCFWDSETDSVASETYINVRLVPVR
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mRNA from alignment at P-lacustris_contig1055:35403..36710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1055.513.1 ID=mRNA_P-lacustris_contig1055.513.1|Name=mRNA_P-lacustris_contig1055.513.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1308bp|location=Sequence derived from alignment at P-lacustris_contig1055:35403..36710- (Pleurocladia lacustris SAG_25_93)
ACCAGTAGTAGAGAGAGGAGAGCCAAATCGTATCCTTGTTTGTATCTTTC TATCCAGGGGTATCTACCTGTCTGTACGAGCGCAATGAGCGGGGGAGGCG CCGAGCTCGGGCAGCAGCTCATGTATCAGACGAGGCCGAGTTATCGACAA AAGTGAGGTTTTTGTTGGTCTCGTCACGTCCGGATAGATGGGCATTGCTG CCGCGTCACAGACAGGTTCAAGTATGTCGTGCTTCACGCACCAATCACAT GTCCTTCCTCTGCGCGAATGTACCACACCCACTTCTCAATCTCAGGGCTT CCGTTAATACAATGCGAGAAATCATCAAAGGCGTCCTCGAATCGGAGCTG CAGGGACGCACTTATCACGTGAGGTTCTGACTTTCAAAAAAGAGCCACAT ACATCCTTGAATCATCACTAGATCTGTTTGTGTCAGTAGAACAGAGAGGA GTCCGCTGGCACACGTCATAGCGGGGAGTTTGGCTCTTGATTTGTATTAC TCAGCAGAGCTCTGTCGGCTTGGTATGATTTCGCCTAGAGTTATTAACCT TCACTCACTGCTGTAAGCTTGCATGTCATGAGTTGCGTCGCGGCCGGCCG TCTTGGATGATTTTTTTTGCAGTTGCAAAGCAGATGCAGCAGGTAGTTAT GACCAAGTAAAGTCACCTGCTAACACACCGGCTACAGAAACACAAGTGTA GTTATCTCTTCTCTGTAAGTCGCGCGCCAGGATGCATGACGGGTAGAGAG CGTGCATGATTCTTCAAGTGCACCAAGAAGCTGAAAACTGGCGGCATCGA CACAACAAACGGGCGCCCAAGCACGGGCCTTATCTCGCACTGGAACTATT TTTCAGGTGGATCAGGCAACGGTACAAACGAAGACGATATCCGACGATAT AAAGAACGGACTCAAGGGTGAGTGAGGAGTGCGCGCTGACATCACCAGCA TCCAATGTTGTGCGCAACACACAATACATAGAACAAATAATGGCGTCACA GAGTGCGGCCTGGAATCTGGTGTACGTTCAGCCTTCAGTGCGGTTGCATG TCTTTCATTTTCTACTGGTAGTCAGGGTACCAATTATCTCACTATTCATT GAAAATCGCCCCATTGCTTTTCTCCACGTGGCGGCCCCTCGATTTCGGCT CAGCGATGAACCTCCCAAGGTACAAATACGTGGTGCAAGTGGTGATAGGG GAACAGCGGGGGGAAGGCGTGCGAATGGGCAGCCGCTGCTTTTGGGACTC CGAAACTGATAGCGTCGCAAGCGAGACCTACATCAATGTGAGGCTGGTGC CTGTGAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1055:35403..36710-

>mRNA_P-lacustris_contig1055.513.1 ID=mRNA_P-lacustris_contig1055.513.1|Name=mRNA_P-lacustris_contig1055.513.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=882bp|location=Sequence derived from alignment at P-lacustris_contig1055:35403..36710- (Pleurocladia lacustris SAG_25_93)
ACCAGTAGTAGAGAGAGGAGAGCCAAATCGTATCCTTGTTTGTATCTTTC
TATCCAGGGGTATCTACCTGTCTGTACGAGCGCAATGAGCGGGGGAGGCG
CCGAGCTCGGGCAGCAGCTCATGTATCAGACGAGGCCGAGTTATCGACAA
AAACCAGTAGTAGAGAGAGGAGAGCCAAATCGTATCCTTGTTTGTATCTT
TCTATCCAGGGGTATCTACCTGTCTGTACGAGCGCAATGAGCGGGGGAGG
CGCCGAGCTCGGGCAGCAGCTCATGTATCAGACGAGGCCGAGTTATCGAC
AAAAGGCTTCCGTTAATACAATGCGAGAAATCATCAAAGGCGTCCTCGAA
TCGGAGCTGCAGGGACGCACTTATCACGGCTTCCGTTAATACAATGCGAG
AAATCATCAAAGGCGTCCTCGAATCGGAGCTGCAGGGACGCACTTATCAC
GTGGATCAGGCAACGGTACAAACGAAGACGATATCCGACGATATAAAGAA
CGGACTCAAGGGTGGATCAGGCAACGGTACAAACGAAGACGATATCCGAC
GATATAAAGAACGGACTCAAGGCGATGAACCTCCCAAGGTACAAATACGT
GGTGCAAGTGGTGATAGGGGAACAGCGGGGGGAAGGCGTGCGAATGGGCA
GCCGCTGCTTTTGGGACTCCGAAACTGATAGCGTCGCAAGCGAGACCTAC
ATCAATGTGAGGCTGGTGCCTGTGAGGCGATGAACCTCCCAAGGTACAAA
TACGTGGTGCAAGTGGTGATAGGGGAACAGCGGGGGGAAGGCGTGCGAAT
GGGCAGCCGCTGCTTTTGGGACTCCGAAACTGATAGCGTCGCAAGCGAGA
CCTACATCAATGTGAGGCTGGTGCCTGTGAGG
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