mRNA_P-lacustris_contig104.404.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig104.404.1
Unique NamemRNA_P-lacustris_contig104.404.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig104.404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig104contigP-lacustris_contig104:59270..60379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size190
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.2429748-CDS-P-lacustris_contig104:59269..593561622815309.2429748-CDS-P-lacustris_contig104:59269..59356Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig104 59270..59356 +
1693493466.1261637-CDS-P-lacustris_contig104:59269..593561693493466.1261637-CDS-P-lacustris_contig104:59269..59356Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig104 59270..59356 +
1622815309.254344-CDS-P-lacustris_contig104:60277..603791622815309.254344-CDS-P-lacustris_contig104:60277..60379Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig104 60278..60379 +
1693493466.134182-CDS-P-lacustris_contig104:60277..603791693493466.134182-CDS-P-lacustris_contig104:60277..60379Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig104 60278..60379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig104.404.1prot_P-lacustris_contig104.404.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig104 59270..60379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig104.404.1

>prot_P-lacustris_contig104.404.1 ID=prot_P-lacustris_contig104.404.1|Name=mRNA_P-lacustris_contig104.404.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=63bp
TTSANVSPQRLHGCCGCIQSSEYQLQQLHRQPKAVARVRFVLKNDRVQHH
RTPIVPAKRAPD*
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mRNA from alignment at P-lacustris_contig104:59270..60379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig104.404.1 ID=mRNA_P-lacustris_contig104.404.1|Name=mRNA_P-lacustris_contig104.404.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1110bp|location=Sequence derived from alignment at P-lacustris_contig104:59270..60379+ (Pleurocladia lacustris SAG_25_93)
ACAACATCTGCAAATGTTTCGCCGCAGAGATTGCATGGCTGTTGTGGCTG
TATACAGAGCTCGGAGTATCAACTGCAACAGCTACATGTAAGTGAAATAA
ATCGCGTTGGTAAGAACGGCCCCTTGCTACAGCCAGTACATCTCTTTGCA
AAGAACGGGTGTGTAGCATGTAAGGGGAGAGCGCATCTACACGTTGCAGC
AGGCAGCAGCGTCCATGTTTGTGGGTCTTAACAGCTTTCTCGCCTTCTCT
ACCCTGGCCCTAGAGCTCTATTTGCGTCAATTTAGCAGCTCCTCAGTTTT
TCAGGGGTGCGGAGGAGTTGCATGCACCCTGGGATGTTGTTTGTTTGCAT
TTGTTTGGGTTGAGAAATTTGCGTTGGAGAGGGCTGTTTCATTGTCGAGT
ACAAGAACGAGGCATGGGGGTCGACGGGCACTTTCCTCGGGCCTCGACGT
GTTACGCGCGGCCTCGCCGGACGTTGGGTTGTGCGGTTACAGTTCGCGCC
ACCGCTTACGAAACTCTTATTTTGCCCGAGGCTCGTTGCTTATTCGCCGC
CGCAAACCGAGCACGTGTTCTTATCTGTCAAGTGATTATTTTAGCCGCGC
ATTTGCCGCTAAAATCGCGGGTTCTTGTTCTTATGTTTTGTATCGCCTCA
TAATGATGGCCAAGAATCATACCCCCATCTCTCAACGCTTCAAGTTTGCC
GAGGTCCTTCAACAACCCTACCCCTGAGGGTCTAGACACCATTCCGCTGG
ACGCCACCCGTCTGGCACGCACGCAAGACGCCCAAGAAACACGCCGAAAA
CAAAATGCGGGGGAATAGCGACCGCGCGGTGTGGCAGTCTCCACCCTCCC
AGAGAAAAAACATTTTGTGCCCACCACCCTCGCCCCTCCGGAGCTACATT
TTTATCACCTACCCCCTGCGAGCCGCGTTCTTGTTTTTATGCAGTCGTCA
CTCTTGTCTAATGGCCGTCCGCGTATTGTCTGTTCTTTGCCCCGGACACG
ACGCACAGAGGCAGCCAAAAGCAGTAGCCAGGGTGCGCTTTGTACTTAAG
AACGACAGGGTCCAGCACCACCGCACGCCCATCGTGCCTGCGAAACGAGC
GCCCGATTAG
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Coding sequence (CDS) from alignment at P-lacustris_contig104:59270..60379+

>mRNA_P-lacustris_contig104.404.1 ID=mRNA_P-lacustris_contig104.404.1|Name=mRNA_P-lacustris_contig104.404.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=378bp|location=Sequence derived from alignment at P-lacustris_contig104:59270..60379+ (Pleurocladia lacustris SAG_25_93)
ACAACATCTGCAAATGTTTCGCCGCAGAGATTGCATGGCTGTTGTGGCTG
TATACAGAGCTCGGAGTATCAACTGCAACAGCTACATACAACATCTGCAA
ATGTTTCGCCGCAGAGATTGCATGGCTGTTGTGGCTGTATACAGAGCTCG
GAGTATCAACTGCAACAGCTACATAGGCAGCCAAAAGCAGTAGCCAGGGT
GCGCTTTGTACTTAAGAACGACAGGGTCCAGCACCACCGCACGCCCATCG
TGCCTGCGAAACGAGCGCCCGATTAGAGGCAGCCAAAAGCAGTAGCCAGG
GTGCGCTTTGTACTTAAGAACGACAGGGTCCAGCACCACCGCACGCCCAT
CGTGCCTGCGAAACGAGCGCCCGATTAG
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