mRNA_P-lacustris_contig104.400.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig104.400.1
Unique NamemRNA_P-lacustris_contig104.400.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig104.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig104contigP-lacustris_contig104:30043..30563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig104.400.1prot_P-lacustris_contig104.400.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig104 30058..30372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.48633-UTR-P-lacustris_contig104:30042..300571622815309.48633-UTR-P-lacustris_contig104:30042..30057Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig104 30043..30057 +
1693493466.234004-UTR-P-lacustris_contig104:30042..300571693493466.234004-UTR-P-lacustris_contig104:30042..30057Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig104 30043..30057 +
1622815309.5084598-UTR-P-lacustris_contig104:30372..305631622815309.5084598-UTR-P-lacustris_contig104:30372..30563Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig104 30373..30563 +
1693493466.2547216-UTR-P-lacustris_contig104:30372..305631693493466.2547216-UTR-P-lacustris_contig104:30372..30563Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig104 30373..30563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.49856-CDS-P-lacustris_contig104:30057..303721622815309.49856-CDS-P-lacustris_contig104:30057..30372Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig104 30058..30372 +
1693493466.244861-CDS-P-lacustris_contig104:30057..303721693493466.244861-CDS-P-lacustris_contig104:30057..30372Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig104 30058..30372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig104.400.1

>prot_P-lacustris_contig104.400.1 ID=prot_P-lacustris_contig104.400.1|Name=mRNA_P-lacustris_contig104.400.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=105bp
MPRKGRGVCVIVGGTRAFFVCDRQWGLVTGLDGGFAVFLWGGRDITHLVV
CAVFKHVDANGRAYGEEGSNFCESSSMRDWMMYLSSCYPPKSLGIIVKAL
FLAI*
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mRNA from alignment at P-lacustris_contig104:30043..30563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig104.400.1 ID=mRNA_P-lacustris_contig104.400.1|Name=mRNA_P-lacustris_contig104.400.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=521bp|location=Sequence derived from alignment at P-lacustris_contig104:30043..30563+ (Pleurocladia lacustris SAG_25_93)
GGCAAAAGGAATCGAATGCCACGGAAAGGGCGGGGTGTGTGCGTTATCGT
AGGAGGTACGCGGGCGTTCTTCGTATGCGACCGACAATGGGGACTTGTTA
CTGGATTGGATGGAGGCTTCGCCGTGTTCCTTTGGGGGGGGAGGGACATA
ACTCATCTTGTTGTGTGTGCGGTTTTCAAGCATGTAGACGCGAACGGGAG
AGCGTATGGGGAGGAAGGAAGCAATTTCTGCGAAAGTTCTTCTATGAGGG
ATTGGATGATGTATCTATCCAGTTGTTATCCCCCAAAGTCATTAGGCATT
ATTGTGAAAGCACTTTTTCTGGCAATTTAAACCATTGATGTGTGTGTACC
AGTAGACCAGTGATATATTACACTAGGTAGGATAGAGAATGGGAGGAGGT
AAATTACGTATGGTCATAGCATTGGGAAGCGCTAGTTTGTTTGTATGTAC
CCAATAATGGACGAGGCCGCTAACCTCTTCTCGCGTCAAGAATTCAAGGC
ATGTACCGCAGGTGGGCGGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig104:30043..30563+

>mRNA_P-lacustris_contig104.400.1 ID=mRNA_P-lacustris_contig104.400.1|Name=mRNA_P-lacustris_contig104.400.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=630bp|location=Sequence derived from alignment at P-lacustris_contig104:30043..30563+ (Pleurocladia lacustris SAG_25_93)
ATGCCACGGAAAGGGCGGGGTGTGTGCGTTATCGTAGGAGGTACGCGGGC
GTTCTTCGTATGCGACCGACAATGGGGACTTGTTACTGGATTGGATGGAG
GCTTCGCCGTGTTCCTTTGGGGGGGGAGGGACATAACTCATCTTGTTGTG
TGTGCGGTTTTCAAGCATGTAGACGCGAACGGGAGAGCGTATGGGGAGGA
AGGAAGCAATTTCTGCGAAAGTTCTTCTATGAGGGATTGGATGATGTATC
TATCCAGTTGTTATCCCCCAAAGTCATTAGGCATTATTGTGAAAGCACTT
TTTCTGGCAATTTAAATGCCACGGAAAGGGCGGGGTGTGTGCGTTATCGT
AGGAGGTACGCGGGCGTTCTTCGTATGCGACCGACAATGGGGACTTGTTA
CTGGATTGGATGGAGGCTTCGCCGTGTTCCTTTGGGGGGGGAGGGACATA
ACTCATCTTGTTGTGTGTGCGGTTTTCAAGCATGTAGACGCGAACGGGAG
AGCGTATGGGGAGGAAGGAAGCAATTTCTGCGAAAGTTCTTCTATGAGGG
ATTGGATGATGTATCTATCCAGTTGTTATCCCCCAAAGTCATTAGGCATT
ATTGTGAAAGCACTTTTTCTGGCAATTTAA
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