mRNA_P-lacustris_contig1036.381.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1036.381.1
Unique NamemRNA_P-lacustris_contig1036.381.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1036.381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1036contigP-lacustris_contig1036:71627..72363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.894112-CDS-P-lacustris_contig1036:71626..717461622815304.894112-CDS-P-lacustris_contig1036:71626..71746Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 71627..71746 +
1693493464.5264463-CDS-P-lacustris_contig1036:71626..717461693493464.5264463-CDS-P-lacustris_contig1036:71626..71746Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 71627..71746 +
1622815304.9029214-CDS-P-lacustris_contig1036:72251..723621622815304.9029214-CDS-P-lacustris_contig1036:72251..72362Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 72252..72362 +
1693493464.5349488-CDS-P-lacustris_contig1036:72251..723621693493464.5349488-CDS-P-lacustris_contig1036:72251..72362Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 72252..72362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1036.381.1prot_P-lacustris_contig1036.381.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1036 71627..72362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1036.381.1

>prot_P-lacustris_contig1036.381.1 ID=prot_P-lacustris_contig1036.381.1|Name=mRNA_P-lacustris_contig1036.381.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=77bp
GRGRWASPRTRKWRMRNLRLQMAGVPPRREEERLLQHQSMVKQRLDEGLS
GGEAFKFLLRLVATHFDYEDRGDALTK
back to top

mRNA from alignment at P-lacustris_contig1036:71627..72363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1036.381.1 ID=mRNA_P-lacustris_contig1036.381.1|Name=mRNA_P-lacustris_contig1036.381.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=737bp|location=Sequence derived from alignment at P-lacustris_contig1036:71627..72363+ (Pleurocladia lacustris SAG_25_93)
GGCCGAGGGAGGTGGGCCAGCCCTCGGACTCGGAAGTGGAGGATGCGAAA
TCTTCGGCTTCAGATGGCGGGAGTGCCTCCGCGTCGGGAGGAGGAGAGGC
TTCTCCAACATCAATCCATGGTGAGACCATGTCTAGATTGATGAGCTCTC
TTCGTTCCCCCCGTCCCAAGCCTCGTAGGGTTCCCCCTTTGTCTTCCGTG
CAGACTCCAACCGTGGTTGGATGTCGCGCAACAGTGTGTCGGTAGTACAC
AATGGTCTCCCCTTTCGTCCCAGCTGGCTCGCACGCGTCAGGCTGAGTTG
GAAGAGGCAGCGAAGTTGGTCGAGATAGCTCGCGTTCGAGATATCGCCAC
CAACTACACGAAAACCAAGTTGCGTGAGATTAAATCCACCCCGCATGCCA
TGGCAGCCAAGCCTCAAAAACGCGGTGCCACAGCTCCTAGACTCCATCTC
TGCCGCGGTCCTCGACATTCTGCAACAAGCGGACCCGTTTATCGTGTTCG
AAGACTCGGATAGTTGGTGTCGAGGATGGGAAAATCCTTTAAGGAAGGCG
ATGATTTCAGCGGTTGTCACAGAGAAAGACACGACCGGAGAACTGATTTC
CTCAATTAACGACATGTTCACGCAGGTGAAGCAGAGGCTGGATGAGGGCT
TGAGCGGTGGCGAAGCCTTCAAGTTCCTCCTGCGGCTGGTAGCGACACAC
TTCGACTATGAGGATCGAGGCGATGCCTTGACAAAGT
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1036:71627..72363+

>mRNA_P-lacustris_contig1036.381.1 ID=mRNA_P-lacustris_contig1036.381.1|Name=mRNA_P-lacustris_contig1036.381.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=462bp|location=Sequence derived from alignment at P-lacustris_contig1036:71627..72363+ (Pleurocladia lacustris SAG_25_93)
GGCCGAGGGAGGTGGGCCAGCCCTCGGACTCGGAAGTGGAGGATGCGAAA
TCTTCGGCTTCAGATGGCGGGAGTGCCTCCGCGTCGGGAGGAGGAGAGGC
TTCTCCAACATCAATCCATGGGCCGAGGGAGGTGGGCCAGCCCTCGGACT
CGGAAGTGGAGGATGCGAAATCTTCGGCTTCAGATGGCGGGAGTGCCTCC
GCGTCGGGAGGAGGAGAGGCTTCTCCAACATCAATCCATGGTGAAGCAGA
GGCTGGATGAGGGCTTGAGCGGTGGCGAAGCCTTCAAGTTCCTCCTGCGG
CTGGTAGCGACACACTTCGACTATGAGGATCGAGGCGATGCCTTGACAAA
GGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTGGCGAAGCCTTCAAGT
TCCTCCTGCGGCTGGTAGCGACACACTTCGACTATGAGGATCGAGGCGAT
GCCTTGACAAAG
back to top