mRNA_P-lacustris_contig1036.380.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1036.380.1
Unique NamemRNA_P-lacustris_contig1036.380.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1036.380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1036contigP-lacustris_contig1036:68940..69889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size950
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1036.380.1prot_P-lacustris_contig1036.380.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1036 69103..69720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.9337687-UTR-P-lacustris_contig1036:68939..691021622815304.9337687-UTR-P-lacustris_contig1036:68939..69102Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1036 68940..69102 +
1693493464.5445096-UTR-P-lacustris_contig1036:68939..691021693493464.5445096-UTR-P-lacustris_contig1036:68939..69102Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1036 68940..69102 +
1622815304.9509673-UTR-P-lacustris_contig1036:69720..698891622815304.9509673-UTR-P-lacustris_contig1036:69720..69889Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1036 69721..69889 +
1693493464.5605326-UTR-P-lacustris_contig1036:69720..698891693493464.5605326-UTR-P-lacustris_contig1036:69720..69889Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1036 69721..69889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.9427977-CDS-P-lacustris_contig1036:69102..697201622815304.9427977-CDS-P-lacustris_contig1036:69102..69720Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 69103..69720 +
1693493464.5529933-CDS-P-lacustris_contig1036:69102..697201693493464.5529933-CDS-P-lacustris_contig1036:69102..69720Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1036 69103..69720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1036.380.1

>prot_P-lacustris_contig1036.380.1 ID=prot_P-lacustris_contig1036.380.1|Name=mRNA_P-lacustris_contig1036.380.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=206bp
MGTSAPPPKRDGILGTLAPSTMTHKTVLLYRGAWAPRPETHERARSQQHP
SLLAGLKMVGSPCLLLGRQASNLFIRTPLQPALLTSGPRADNGRLPLLSR
HHRDRPRRVRIPLGQHASCTILLEPRRSPPIQQCSMKLVLSIPNLCKNHL
KLKCILFWYLVRIQLQCRFCDLRAFTLQGQAPPSTPLWQYSRCCRTVQAS
LWPRL*
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mRNA from alignment at P-lacustris_contig1036:68940..69889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1036.380.1 ID=mRNA_P-lacustris_contig1036.380.1|Name=mRNA_P-lacustris_contig1036.380.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=950bp|location=Sequence derived from alignment at P-lacustris_contig1036:68940..69889+ (Pleurocladia lacustris SAG_25_93)
TCACCCTTGGAGGTTCCGCACACCCCTGACGCTCCGCGAGCCGGTGCGCT
CCCCGACGTCCTACGAGCCCGCGCGCTCCCTGCGGTGACTGCTGGCGCGC
GCTCTGCGGTAGCCGCCCTCGGGTTTGAGCTCACCACCCAAGGTGTTCGA
GAGGGCGCAGTTCATGGGCACTTCGGCTCCACCACCCAAGAGGGACGGGA
TTCTGGGCACCTTGGCTCCGAGCACCATGACGCACAAGACGGTACTGCTG
TACCGAGGCGCCTGGGCTCCGCGCCCTGAGACGCACGAGCGGGCGCGCTC
GCAGCAGCACCCCTCGTTGTTGGCCGGGCTCAAGATGGTGGGATCGCCGT
GCCTGCTGCTCGGGAGGCAGGCATCGAATCTTTTTATTCGCACGCCCTTG
CAACCCGCCCTTCTGACCTCAGGTCCCCGCGCGGACAACGGCCGTTTGCC
CCTCTTGTCGCGCCACCACCGCGACAGACCGCGCCGCGTACGGATACCCC
TAGGCCAGCACGCGTCATGCACCATTTTGCTCGAGCCGAGGCGGAGTCCT
CCTATACAGCAGTGCAGCATGAAATTGGTGTTGTCGATTCCCAACCTGTG
CAAGAACCACTTGAAATTAAAGTGCATCCTCTTTTGGTATCTGGTCCGAA
TCCAACTGCAATGCCGATTTTGCGATCTTCGCGCTTTCACACTTCAAGGC
CAGGCGCCACCGAGTACCCCTCTCTGGCAGTACAGCAGATGTTGTCGAAC
CGTTCAAGCATCCCTTTGGCCCCGCCTTTGACGCTCCCCCCTGCTGCGCA
CCCACTTCAGCGCGCGTCTGATGACCCACGCCGTTTTGAAACAGCAGCGA
GGACGAATTTTTCAATTGTGCTGCAACCGCCCACAACTCGTGAAAAATCG
AGTCGAGTTTTGACTGCACCGGTTTTTTCTGCTGCTCCACCTCAACAGAT
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Coding sequence (CDS) from alignment at P-lacustris_contig1036:68940..69889+

>mRNA_P-lacustris_contig1036.380.1 ID=mRNA_P-lacustris_contig1036.380.1|Name=mRNA_P-lacustris_contig1036.380.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1236bp|location=Sequence derived from alignment at P-lacustris_contig1036:68940..69889+ (Pleurocladia lacustris SAG_25_93)
ATGGGCACTTCGGCTCCACCACCCAAGAGGGACGGGATTCTGGGCACCTT
GGCTCCGAGCACCATGACGCACAAGACGGTACTGCTGTACCGAGGCGCCT
GGGCTCCGCGCCCTGAGACGCACGAGCGGGCGCGCTCGCAGCAGCACCCC
TCGTTGTTGGCCGGGCTCAAGATGGTGGGATCGCCGTGCCTGCTGCTCGG
GAGGCAGGCATCGAATCTTTTTATTCGCACGCCCTTGCAACCCGCCCTTC
TGACCTCAGGTCCCCGCGCGGACAACGGCCGTTTGCCCCTCTTGTCGCGC
CACCACCGCGACAGACCGCGCCGCGTACGGATACCCCTAGGCCAGCACGC
GTCATGCACCATTTTGCTCGAGCCGAGGCGGAGTCCTCCTATACAGCAGT
GCAGCATGAAATTGGTGTTGTCGATTCCCAACCTGTGCAAGAACCACTTG
AAATTAAAGTGCATCCTCTTTTGGTATCTGGTCCGAATCCAACTGCAATG
CCGATTTTGCGATCTTCGCGCTTTCACACTTCAAGGCCAGGCGCCACCGA
GTACCCCTCTCTGGCAGTACAGCAGATGTTGTCGAACCGTTCAAGCATCC
CTTTGGCCCCGCCTTTGAATGGGCACTTCGGCTCCACCACCCAAGAGGGA
CGGGATTCTGGGCACCTTGGCTCCGAGCACCATGACGCACAAGACGGTAC
TGCTGTACCGAGGCGCCTGGGCTCCGCGCCCTGAGACGCACGAGCGGGCG
CGCTCGCAGCAGCACCCCTCGTTGTTGGCCGGGCTCAAGATGGTGGGATC
GCCGTGCCTGCTGCTCGGGAGGCAGGCATCGAATCTTTTTATTCGCACGC
CCTTGCAACCCGCCCTTCTGACCTCAGGTCCCCGCGCGGACAACGGCCGT
TTGCCCCTCTTGTCGCGCCACCACCGCGACAGACCGCGCCGCGTACGGAT
ACCCCTAGGCCAGCACGCGTCATGCACCATTTTGCTCGAGCCGAGGCGGA
GTCCTCCTATACAGCAGTGCAGCATGAAATTGGTGTTGTCGATTCCCAAC
CTGTGCAAGAACCACTTGAAATTAAAGTGCATCCTCTTTTGGTATCTGGT
CCGAATCCAACTGCAATGCCGATTTTGCGATCTTCGCGCTTTCACACTTC
AAGGCCAGGCGCCACCGAGTACCCCTCTCTGGCAGTACAGCAGATGTTGT
CGAACCGTTCAAGCATCCCTTTGGCCCCGCCTTTGA
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