Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 950 |
| Cds size | 618 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815304.9337687-UTR-P-lacustris_contig1036:68939..69102 | 1622815304.9337687-UTR-P-lacustris_contig1036:68939..69102 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1036 68940..69102 + |
| 1693493464.5445096-UTR-P-lacustris_contig1036:68939..69102 | 1693493464.5445096-UTR-P-lacustris_contig1036:68939..69102 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1036 68940..69102 + |
| 1622815304.9509673-UTR-P-lacustris_contig1036:69720..69889 | 1622815304.9509673-UTR-P-lacustris_contig1036:69720..69889 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1036 69721..69889 + |
| 1693493464.5605326-UTR-P-lacustris_contig1036:69720..69889 | 1693493464.5605326-UTR-P-lacustris_contig1036:69720..69889 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1036 69721..69889 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815304.9427977-CDS-P-lacustris_contig1036:69102..69720 | 1622815304.9427977-CDS-P-lacustris_contig1036:69102..69720 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1036 69103..69720 + |
| 1693493464.5529933-CDS-P-lacustris_contig1036:69102..69720 | 1693493464.5529933-CDS-P-lacustris_contig1036:69102..69720 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1036 69103..69720 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1036.380.1 >prot_P-lacustris_contig1036.380.1 ID=prot_P-lacustris_contig1036.380.1|Name=mRNA_P-lacustris_contig1036.380.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=206bp
MGTSAPPPKRDGILGTLAPSTMTHKTVLLYRGAWAPRPETHERARSQQHP
SLLAGLKMVGSPCLLLGRQASNLFIRTPLQPALLTSGPRADNGRLPLLSR
HHRDRPRRVRIPLGQHASCTILLEPRRSPPIQQCSMKLVLSIPNLCKNHL
KLKCILFWYLVRIQLQCRFCDLRAFTLQGQAPPSTPLWQYSRCCRTVQAS
LWPRL* back to topmRNA from alignment at P-lacustris_contig1036:68940..69889+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1036.380.1 ID=mRNA_P-lacustris_contig1036.380.1|Name=mRNA_P-lacustris_contig1036.380.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=950bp|location=Sequence derived from alignment at P-lacustris_contig1036:68940..69889+ (Pleurocladia lacustris SAG_25_93)
TCACCCTTGGAGGTTCCGCACACCCCTGACGCTCCGCGAGCCGGTGCGCT
CCCCGACGTCCTACGAGCCCGCGCGCTCCCTGCGGTGACTGCTGGCGCGC
GCTCTGCGGTAGCCGCCCTCGGGTTTGAGCTCACCACCCAAGGTGTTCGA
GAGGGCGCAGTTCATGGGCACTTCGGCTCCACCACCCAAGAGGGACGGGA
TTCTGGGCACCTTGGCTCCGAGCACCATGACGCACAAGACGGTACTGCTG
TACCGAGGCGCCTGGGCTCCGCGCCCTGAGACGCACGAGCGGGCGCGCTC
GCAGCAGCACCCCTCGTTGTTGGCCGGGCTCAAGATGGTGGGATCGCCGT
GCCTGCTGCTCGGGAGGCAGGCATCGAATCTTTTTATTCGCACGCCCTTG
CAACCCGCCCTTCTGACCTCAGGTCCCCGCGCGGACAACGGCCGTTTGCC
CCTCTTGTCGCGCCACCACCGCGACAGACCGCGCCGCGTACGGATACCCC
TAGGCCAGCACGCGTCATGCACCATTTTGCTCGAGCCGAGGCGGAGTCCT
CCTATACAGCAGTGCAGCATGAAATTGGTGTTGTCGATTCCCAACCTGTG
CAAGAACCACTTGAAATTAAAGTGCATCCTCTTTTGGTATCTGGTCCGAA
TCCAACTGCAATGCCGATTTTGCGATCTTCGCGCTTTCACACTTCAAGGC
CAGGCGCCACCGAGTACCCCTCTCTGGCAGTACAGCAGATGTTGTCGAAC
CGTTCAAGCATCCCTTTGGCCCCGCCTTTGACGCTCCCCCCTGCTGCGCA
CCCACTTCAGCGCGCGTCTGATGACCCACGCCGTTTTGAAACAGCAGCGA
GGACGAATTTTTCAATTGTGCTGCAACCGCCCACAACTCGTGAAAAATCG
AGTCGAGTTTTGACTGCACCGGTTTTTTCTGCTGCTCCACCTCAACAGAT
back to topCoding sequence (CDS) from alignment at P-lacustris_contig1036:68940..69889+ >mRNA_P-lacustris_contig1036.380.1 ID=mRNA_P-lacustris_contig1036.380.1|Name=mRNA_P-lacustris_contig1036.380.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1236bp|location=Sequence derived from alignment at P-lacustris_contig1036:68940..69889+ (Pleurocladia lacustris SAG_25_93)
ATGGGCACTTCGGCTCCACCACCCAAGAGGGACGGGATTCTGGGCACCTT
GGCTCCGAGCACCATGACGCACAAGACGGTACTGCTGTACCGAGGCGCCT
GGGCTCCGCGCCCTGAGACGCACGAGCGGGCGCGCTCGCAGCAGCACCCC
TCGTTGTTGGCCGGGCTCAAGATGGTGGGATCGCCGTGCCTGCTGCTCGG
GAGGCAGGCATCGAATCTTTTTATTCGCACGCCCTTGCAACCCGCCCTTC
TGACCTCAGGTCCCCGCGCGGACAACGGCCGTTTGCCCCTCTTGTCGCGC
CACCACCGCGACAGACCGCGCCGCGTACGGATACCCCTAGGCCAGCACGC
GTCATGCACCATTTTGCTCGAGCCGAGGCGGAGTCCTCCTATACAGCAGT
GCAGCATGAAATTGGTGTTGTCGATTCCCAACCTGTGCAAGAACCACTTG
AAATTAAAGTGCATCCTCTTTTGGTATCTGGTCCGAATCCAACTGCAATG
CCGATTTTGCGATCTTCGCGCTTTCACACTTCAAGGCCAGGCGCCACCGA
GTACCCCTCTCTGGCAGTACAGCAGATGTTGTCGAACCGTTCAAGCATCC
CTTTGGCCCCGCCTTTGAATGGGCACTTCGGCTCCACCACCCAAGAGGGA
CGGGATTCTGGGCACCTTGGCTCCGAGCACCATGACGCACAAGACGGTAC
TGCTGTACCGAGGCGCCTGGGCTCCGCGCCCTGAGACGCACGAGCGGGCG
CGCTCGCAGCAGCACCCCTCGTTGTTGGCCGGGCTCAAGATGGTGGGATC
GCCGTGCCTGCTGCTCGGGAGGCAGGCATCGAATCTTTTTATTCGCACGC
CCTTGCAACCCGCCCTTCTGACCTCAGGTCCCCGCGCGGACAACGGCCGT
TTGCCCCTCTTGTCGCGCCACCACCGCGACAGACCGCGCCGCGTACGGAT
ACCCCTAGGCCAGCACGCGTCATGCACCATTTTGCTCGAGCCGAGGCGGA
GTCCTCCTATACAGCAGTGCAGCATGAAATTGGTGTTGTCGATTCCCAAC
CTGTGCAAGAACCACTTGAAATTAAAGTGCATCCTCTTTTGGTATCTGGT
CCGAATCCAACTGCAATGCCGATTTTGCGATCTTCGCGCTTTCACACTTC
AAGGCCAGGCGCCACCGAGTACCCCTCTCTGGCAGTACAGCAGATGTTGT
CGAACCGTTCAAGCATCCCTTTGGCCCCGCCTTTGA back to top
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