mRNA_P-lacustris_contig1035.376.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1035.376.1
Unique NamemRNA_P-lacustris_contig1035.376.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1035.376.1 vs. uniprot
Match: D7FV03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV03_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.220e-24
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:  211 QVRRLANQALVDLFNALGGSRWRNKTGWLTSGTE---WHGVTVNAGSLVSLNLISNDLE 378
            Q+RRLANQALVD+FNALGG RWRNK+GWLT GT+   WHGVTVNAGSLVSLNL+SNDLE
Sbjct:   12 QIRRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKKWHGVTVNAGSLVSLNLMSNDLE 70
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BLAST of mRNA_P-lacustris_contig1035.376.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.530e-10
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  199 PPSGQVRRLANQALVDLFNALGGSRWRNKTGWLTSGT---EWHGVTVN-AGSLVSLNLISNDLE 378
            P S   RR+ANQ L DL++ LGG  W+ + GWL  G+   EWHG+T+  +G LVS+NLISNDLE
Sbjct:   27 PSSSTQRRMANQGLQDLYDWLGGDNWKCRDGWLDPGSDVREWHGLTITTSGDLVSINLISNDLE 90
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BLAST of mRNA_P-lacustris_contig1035.376.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 5.210e-5
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  193 PRPPSGQVRRLANQALVDLFNALGGSRWRNKTGWLTSG--TEWHGVTVNA-GSLVSLNLISNDLE 378
            PRPP   + +   +ALV L+ A+GG++WRN   W TS   ++WHGV VN+ G +V+L L  N+L+
Sbjct:   19 PRPPY-TMAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQ 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1035.376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FV03_ECTSI2.220e-2483.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ86_ECTSI1.530e-1054.69Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
D8LFJ9_ECTSI5.210e-544.62Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1035contigP-lacustris_contig1035:23113..27269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved hypothetical protein
Ec32 orthologEc-13_002040.1
Exons2
Model size1026
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1035.376.1prot_P-lacustris_contig1035.376.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1035 23680..27119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.625566-UTR-P-lacustris_contig1035:23112..236791622815304.625566-UTR-P-lacustris_contig1035:23112..23679Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1035 23113..23679 -
1693493464.3616216-UTR-P-lacustris_contig1035:23112..236791693493464.3616216-UTR-P-lacustris_contig1035:23112..23679Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1035 23113..23679 -
1622815304.696837-UTR-P-lacustris_contig1035:27119..272691622815304.696837-UTR-P-lacustris_contig1035:27119..27269Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1035 27120..27269 -
1693493464.3907337-UTR-P-lacustris_contig1035:27119..272691693493464.3907337-UTR-P-lacustris_contig1035:27119..27269Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1035 27120..27269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.6726556-CDS-P-lacustris_contig1035:23679..237601622815304.6726556-CDS-P-lacustris_contig1035:23679..23760Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1035 23680..23760 -
1693493464.3710623-CDS-P-lacustris_contig1035:23679..237601693493464.3710623-CDS-P-lacustris_contig1035:23679..23760Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1035 23680..23760 -
1622815304.6876404-CDS-P-lacustris_contig1035:26891..271191622815304.6876404-CDS-P-lacustris_contig1035:26891..27119Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1035 26892..27119 -
1693493464.3793688-CDS-P-lacustris_contig1035:26891..271191693493464.3793688-CDS-P-lacustris_contig1035:26891..27119Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1035 26892..27119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1035.376.1

>prot_P-lacustris_contig1035.376.1 ID=prot_P-lacustris_contig1035.376.1|Name=mRNA_P-lacustris_contig1035.376.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=103bp
MTTVDNHDNSVLPSPRPPSGQVRRLANQALVDLFNALGGSRWRNKTGWLT
SGTEWHGVTVNAGSLVSLNLISNDLECCSRRNSTSLELDHQAAVGRSIQK
SS*
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mRNA from alignment at P-lacustris_contig1035:23113..27269-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1035.376.1 ID=mRNA_P-lacustris_contig1035.376.1|Name=mRNA_P-lacustris_contig1035.376.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4157bp|location=Sequence derived from alignment at P-lacustris_contig1035:23113..27269- (Pleurocladia lacustris SAG_25_93)
GAAGTGTCCTGTCCCGTCTACTATCCCTCTCCCATCCGTCCTTCGTGGGC
GAAGACCTGATGGCGAAGACAGACACCCACGAAATGGGTGAGATTCTACC
TCTGATATAGCGCGCTTCTGTCTATAAGAGGGGTCCTCTCCTTACCGCCG
ATGACCACAGTAGACAATCACGACAATTCGGTGCTTCCTTCCCCCCGTCC
TCCTTCAGGGCAAGTCCGGCGACTGGCGAATCAGGCTTTGGTCGATTTGT
TCAACGCGCTTGGGGGTAGTCGATGGCGAAATAAAACTGGCTGGCTTACA
TCCGGGACAGAATGGCACGGGGTGACAGTGAACGCGGGGAGCCTCGTGTC
GCTCAACTTGATCAGCAACGACTTGGAGGTGAATGAGGAATCATGGTGTT
CAGGCAGCGCTTTGATAATCCAGATACAGCATGAATTCATCTCCACACTA
TCTATAGCCGCCATCCTGTCTCCTGACGAAGCAGCTTGGCTGTCTTTCAG
TTCTCCATTGTGGTGCCTCTGCTGATGGTACGCAAGTTGTACGGCAACAC
CGAGTCCTCCCCGCTACTGTAGGCGCTCGACTTAACCCTTTGTGACCGTA
TAGTGTGACGATAGTTACGATAGCAGTGAGGGTACTCTTTTAGCTGTTCT
CGCCAATCCCTCTGCTTGTTGTGTGCTGCACCGCGGCGAGCTGTGAGCTG
TGCTGCATGATGTGTGTTGTATCGCGCACCCTCCCGTGACTACAGTGTGG
GGGTCCAGTTCCCGTAGCCCTCACTGTCCACTGAGGATAGCAGTGAGCGT
ACTCTTCTTAGCTGTACTTGTCCATCCCTCTGCTAGTTGTGTGCTGCGCC
ACGCTGAGCTGTGAGCTGTGCTGTAGATACATGTGTTTTGTATCTCGCAC
CCCCCCCCCGTGACTGAGGGTCCAGTTCGCGTAACCATCACTCCTATCGT
CACTCAGAGTCCGCCATTCTCAAAAGTAGTACGATTCTCTCTCCATCTAT
CTCTATCTCCCCCACTCAATTTTAACCAAGTTTTAAGTTGTTAGGGGGTC
CGCGCATGAGAAAAGGCGATTTTCCAGTTTTGATTTTGTGCTTGCTCTCT
AGGCTTTCTCTTCCGCTCTCTGTTCGCGCTGAGATGCTCTTCGCAGCGCT
CAGCAGTGAAGGATAGTACAGCTAAGAAGAGTACCCTCACTGCTATAGTC
ACTATCGTCACTATGAGGTCACAAAAGGGTTGACGGCTCCGATTTCATAG
GTAGGGGTTGCTCTAAAAATAATCAAATATTTCGCGCGAAGCGCGAAAAA
ACACGAGGAGGCGTACTCGACAGACGTACAAAAGAGACGAGATATTTGCT
TCCCTCCTCTTGCCGCATATCTCTCCGACAAATGCTTCGATTTCGAAATG
GATTTTTGCGTTGGATGGCTGGGTAAGTAAGATGCGGGGGTAGCGTTGGT
GTTCAGACGCTACATTAGGTAGAAATTTTACATCCGAACAGCGCAAAATC
AAGTATATCCTGATGTTTTCGTTCTCATTTCCCCTTGGTAGGTGTAGGTG
CTCCAGTACTTTCTCTTGGTTGGATATCTGAGGTCGGGGACCCTAAAGTA
AAATTTTCCGCAACACGCGAAGAGTCAACACACATCAGGCGCTTTGGCGA
GAGAAGCCCAGGAAAGAGGAAAACGACATATGCTAAGGCATCCACGACCT
CGCACAAGCTGCTCCCTCCTCCTCGCCCTGCCAAGTACGTCGCAACGAAA
GGAACGGTGCTGAGTGCTACTGCACCTGAAAGTACACGAAATATCGAATC
ACAGGAGGATAGTTATGTCCGCGTGCGTACTTTGGACACGCACAGGAGCA
ACCGTGGCATGTGTTTTGAACGGTTTGGGAGTCTTTCGGCACGTCTCCCG
TGGGGCCTTTTAGGGTCATTCTTATCGAACCACTTTTTTCTACGAATTCG
TATCTTGAAAAACGATTTTGTGTATACCGAGGCGCGGAAAATCGATTTAA
TGTAATTCAACACGCGGAGATTTTTTCGTATATATATGGTCCTTATACGA
AGTCGGAGAAAAAAATCTCACAGCAATCGCTTTTGGTCATTTCCAAAAAT
CATTTTCGTATAATTTTATACGAATTCGTATAAAATGTGGTTCGATAAGA
ATGGGCCTAATCCAAGCATTCCCCGCTCGTTGCGCCAGTTTCCAACAACT
GTGTACCGACAGATGTTCAGGGCCGGGTAAGGGCGAACAAAGAACTAAGA
AACGACGTCCTGCTGACTAGCCGACGCTCCACCCGGTGCCAAACTACGCA
CAAAGTGCGCAAATGTTTCAGTGTCGAGCATGACCTCGGAATTTCGTTTC
GTACCACTCGCTACTGCCACGAGCCCTTGCTTGACCTGCCCAGTATCTGC
TTGGATCGGCCCAGTATGTTTGGTGACAACAAAAATATCAACCCACAACA
CAAGTTGCAGCAAAATTGCTCCAGGACAGCCAAACTCTATCACAACACAT
CTTTGGTGCTACCGCCGACACGCAATAACGTTTGGTCCATCTCCTCCGTT
CTGTGCGTGTTACTCTCGAAGGGCTGAGGTAGAAACGCATGCCGAGCGGA
CCAGACACACGTGTGTTGGTTCCGTACACCTCGAGCATCAGGGTTGGTTG
TCTCTCCATTCACTCACTCATCCATCGCAGTGTAGCATTTTCGCGGGCGC
GCAAGCCAGGGCCAACTGTTTGCCTGCACAACGGAACAGGGAACAAAACA
AGTCAAGGCTGACATCATAAGATCCGTAACGTTATGTTGGTTGGTAGCCG
TAATGTAATGGACGTGAACATGTTGCGGTATTATCGTGGAACGACAAATT
TGAGCAGGAAAGCAGCAGCGACATTCGTCATGATGGTAACGCAGTTACGC
GGCAGCTACATTCGTCATGATGGTACCGCAGTTACGCGGCAGCTGTACGT
GCCACCCGAGCCGTCCATTTCTTGCCCGAAAGCGCCTGCTGCCGTAGGGT
CGACGCCATGCCCGCAGCAAGACCCGGGACGTTGAGCTGATGAGCGCAGC
GCTAGAAAACGAAAAAACATTCGCTACATCGATACAACGATGTGATGACA
GTTGCCACGCCCGCAGATAGGAAAATGTATGTTGAGAAAAATATGTATGG
CAAACCCCCCTCGGGGGGCCTTTCCTGGATTTCTGTTGGAACTGTCCCGA
GGGGCGTTTGACCCCGTTGGGTACGTGCTTGAAGCGAAGAAAACAGGATG
TACATGGACGCTGCGATTTAGCACAGAACCAAACTATTCACCGGGACGCG
ATGGCACATCAATTCTACTACTTCAAGAATCAACCCAGCCTGCTACTGCC
ATTCTACTGTTAAGCTAGTGCTGGGGAGGTGAACAAAGACACCAGGGGTC
ACAACCTGCGCGTTCCGGCCCCTCGTTCTCAATTTCAAATTGAAATCCAA
CGCCAAACACGCCGCTCCATCCTGTTCTCTCTCTCTCTCCTTTCTCCTGC
CTCGCCCAGTGCTGTTCTCGACGCAACTCTACATCACTCGAACTCGACCA
TCAAGCAGCTGTTGGCAGATCCATCCAAAAGTCTTCATGAAACAGGTGCA
ACATCAACCGACTGGGCGAAGCTACCCACTTGCGAGACGGCACGTGACAT
GTGCCTACAAAGTCCCGACCGACACCATGGTGGGGAGGGGGAAACTCACA
CAAGCAATTGGGTGCTCGACACCGCCACACCAGTAGCTAGCACCCCGAGT
TTGATCTTGTCGGGAAGCAACTCGAAAAAGACACACACGGGCGTCTTTCT
GGCCAAAGAGACGGTGGCCGAAGCTGAAAAATAACACCCGCACTACACGC
CTGACCTGCCATGCTGGTGCTTCTCCTGTACGTTCCACGGGCAGCGTATT
CATCCGCCACACCAAGCAATCGGCTGTTTGTGCTGCTGTAGCTCTGTCAC
CTTCACATTATTTATTCCCCCGCTAGTCATCCCCGTTGGAAGCTGGGCAC
CTTCTCGCGTCCAGGCAGAGCGTGAGAAGGGGGAAAAGAGATAGTGTTGG
GATGTGTTGTGCGCAAGCAAGCAACTTTTTCGTGGAAAGTGGAAAGTGCC
CCGGGCAAACACAGAGTGCACAAATTTTTCGTGGCCCACAGGAGAAGTAC
AGCAGCC
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Coding sequence (CDS) from alignment at P-lacustris_contig1035:23113..27269-

>mRNA_P-lacustris_contig1035.376.1 ID=mRNA_P-lacustris_contig1035.376.1|Name=mRNA_P-lacustris_contig1035.376.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=618bp|location=Sequence derived from alignment at P-lacustris_contig1035:23113..27269- (Pleurocladia lacustris SAG_25_93)
ATGACCACAGTAGACAATCACGACAATTCGGTGCTTCCTTCCCCCCGTCC
TCCTTCAGGGCAAGTCCGGCGACTGGCGAATCAGGCTTTGGTCGATTTGT
TCAACGCGCTTGGGGGTAGTCGATGGCGAAATAAAACTGGCTGGCTTACA
TCCGGGACAGAATGGCACGGGGTGACAGTGAACGCGGGGAGCCTCGTGTC
GCTCAACTTGATCAGCAACGACTTGGAGATGACCACAGTAGACAATCACG
ACAATTCGGTGCTTCCTTCCCCCCGTCCTCCTTCAGGGCAAGTCCGGCGA
CTGGCGAATCAGGCTTTGGTCGATTTGTTCAACGCGCTTGGGGGTAGTCG
ATGGCGAAATAAAACTGGCTGGCTTACATCCGGGACAGAATGGCACGGGG
TGACAGTGAACGCGGGGAGCCTCGTGTCGCTCAACTTGATCAGCAACGAC
TTGGAGTGCTGTTCTCGACGCAACTCTACATCACTCGAACTCGACCATCA
AGCAGCTGTTGGCAGATCCATCCAAAAGTCTTCATGATGCTGTTCTCGAC
GCAACTCTACATCACTCGAACTCGACCATCAAGCAGCTGTTGGCAGATCC
ATCCAAAAGTCTTCATGA
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