mRNA_P-lacustris_contig1030.356.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1030.356.1 vs. uniprot
Match: D8LFA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA6_ECTSI) HSP 1 Score: 121 bits (304), Expect = 8.320e-28 Identity = 95/171 (55.56%), Postives = 107/171 (62.57%), Query Frame = 1
Query: 1648 LQVQMAGLQEKSLASRLAYERLHADKLASD--VVSAEEQQRLLAKEAADAKNKSAVAEEARRTAESRVSTLEGRLLNLRKEDERASSAEAGAADAAARTARSKADQVDVLRKKVARMEASVQAEKTSREEVEQGLSRALSAKGKLERFLEGVLKVNEELVKVKALGGGDAG 2154
+QVQMAGLQEKSLASRLAYERL ADK ASD + AEEQ+R LA+E A AK+KS KE+E++SSAEA A RT RSKADQ DVLR+KVAR+EASV+ EQGL RALSAK KLERFLEGVLK + L G G AG
Sbjct: 1 MQVQMAGLQEKSLASRLAYERLQADKAASDLRIRKAEEQKRQLARETASAKDKSXXXXXXXXXXXXXXXXXXXXXXXXGKEEEKSSSAEAKAXXXXXRTXRSKADQADVLREKVARVEASVRXXXXXXXXXEQGLERALSAKVKLERFLEGVLKESSNL------GTGHAG 165
BLAST of mRNA_P-lacustris_contig1030.356.1 vs. uniprot
Match: A0A7R9YA16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA16_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.450e-12 Identity = 77/216 (35.65%), Postives = 126/216 (58.33%), Query Frame = 1
Query: 1501 SAGSKAVLSALRALQDKIRKLESERDRASVEAGTLRRQIAALQTENGRTLQVQMAGLQEKSLASRLAYERLHADKLASDV--VSAEEQQRLLAKEAADAKNKSAVAEEARRTAESRVSTLEGRLLNLRKEDERASSAEAGAADAAARTARSKADQVDV-LRKKVARMEASVQAEKTSREEVEQGLSRALSAKGKLERFLEGVLKVNEELVKVKALG 2139
S+GS+AVLSALRALQDKI++LE ER +A E L++Q+ + R+ +++ E+ ASRLA ER+ A+K ++ AEE + L KE + ++ +E ARRTA+ +S ++G + L E + + A A + A+ R + DQ ++ L + ++E ++ EKT R E A++ K +L+ FL+GV+ +NE+LV+ A G
Sbjct: 225 SSGSRAVLSALRALQDKIKRLEGERSKALDEVNALKQQLEEAEASAKRSRELEKLTNSEQVHASRLANERVTAEKKVVEMRLSKAEEHKASLRKEIDALRKAASESEIARRTADGNLSVVQGHVRELEGELDDMKAQLAVAHEELAKE-RDERDQREIELGVVIQKIEEQLREEKTMRCE-------AVTEKERLDEFLKGVVAINEDLVRSIAKG 432 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1030.356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1030.356.1 >prot_P-lacustris_contig1030.356.1 ID=prot_P-lacustris_contig1030.356.1|Name=mRNA_P-lacustris_contig1030.356.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=608bp MGGGASAHVGSGGRDEARGSPRGASSWRTEADADLSDIKATMRRIDDAGAback to top mRNA from alignment at P-lacustris_contig1030:41160..55805+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1030.356.1 ID=mRNA_P-lacustris_contig1030.356.1|Name=mRNA_P-lacustris_contig1030.356.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=14646bp|location=Sequence derived from alignment at P-lacustris_contig1030:41160..55805+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1030:41160..55805+ >mRNA_P-lacustris_contig1030.356.1 ID=mRNA_P-lacustris_contig1030.356.1|Name=mRNA_P-lacustris_contig1030.356.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3648bp|location=Sequence derived from alignment at P-lacustris_contig1030:41160..55805+ (Pleurocladia lacustris SAG_25_93)back to top |