|
|
Homology
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: D8LIR0_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR0_ECTSI) HSP 1 Score: 372 bits (955), Expect = 2.870e-121 Identity = 198/232 (85.34%), Postives = 209/232 (90.09%), Query Frame = 3
Query: 561 GEEGIEASPAHREKPEGSKIARARSAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKERMKSELAAAGLTKLPARKSSSEAVEGGPTSLVLPLARVRKTVRLDPSVGNISKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEMYWLRDEFREERSSVKKKQHKPEAGGAKAAGVKKAGVAA-PKRGRSITSFFQKA 1253
GE G+ ASP EKP+GSKIARARSAWMLFLADNR+ VR EHPGLAVGPMQKILSEMWK LGE EVARYAKLAAEDKER+K+ELAAAGLTKLP + SSS AV GGPTSLVLPLARVRKTVRLDPSVGNISKEGL+L+TKATEVFMA LADHAW IGRQTGRKSVRPCDVADFVFAAPEMYWL+DEFREERSSVKKKQ +PEAGGAKAAG KAGV A PK + ITSFFQKA
Sbjct: 162 GEAGVAASPPSGEKPDGSKIARARSAWMLFLADNREGVRKEHPGLAVGPMQKILSEMWKALGEAEVARYAKLAAEDKERVKNELAAAGLTKLPTKNSSSAAVAGGPTSLVLPLARVRKTVRLDPSVGNISKEGLLLVTKATEVFMAVLADHAWNIGRQTGRKSVRPCDVADFVFAAPEMYWLKDEFREERSSVKKKQSRPEAGGAKAAGATKAGVTAVPKGAKPITSFFQKA 393
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: A0A6H5K256_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K256_9PHAE) HSP 1 Score: 109 bits (273), Expect = 2.030e-23 Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 3
Query: 579 ASPAHREKPEGSKIARARSAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAED 788
ASP EKP+ SKIARARSAWMLFLADNR+ VR EHPGLAVGPMQKILSEMWK LGE EVARYAK+ + D
Sbjct: 175 ASPPSGEKPDESKIARARSAWMLFLADNREGVRKEHPGLAVGPMQKILSEMWKGLGEAEVARYAKVRSLD 244
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: A0A1V9ZFH9_9STRA (HMG box domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFH9_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.740e-22 Identity = 80/221 (36.20%), Postives = 123/221 (55.66%), Query Frame = 3
Query: 609 GSKIARARSAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKERM---KSELAAAGLTKLPARKS-SSEAVEGGPTSLVLPLARVRKTVRLDPSVGNISKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEMYWLRDEFRE--ERSSVKKKQHKPEAGGAKAAGVKKAGVAAPKRGRSITSFFQKA 1253
G +++ +SA+ FLA R +V+A++PG A+G +QKIL WK L EE Y +LA +DKER K+EL A G+ P + + +SE V L LP ARV++ + D V +SK+ L+ +TKATE+F+ LA + + RK+++ D+ + + WLRD+F + RS+V+ K AK + + AP SI+SFFQ+A
Sbjct: 58 GPLVSKPQSAYFHFLAAKRGEVKADNPGAAIGAIQKILGTKWKELTSEEKEPYIQLALDDKERYAKEKAELLARGIDIEPEKTTVASEDV------LSLPCARVKRIINADQDVSKVSKDALIAITKATELFIKYLAAKGYDSAMISKRKTIKDSDLIQVIHGHGALDWLRDDFPQTSSRSAVEPKA-------AKVSSRTEPSGNAP----SISSFFQRA 261
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: A0A1V9ZYX4_9STRA (HMG box domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYX4_9STRA) HSP 1 Score: 106 bits (264), Expect = 3.390e-22 Identity = 68/187 (36.36%), Postives = 105/187 (56.15%), Query Frame = 3
Query: 573 IEASPAHRE-KPEGSKIARARSAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKERM---KSELAAAGLTKLPARKS-SSEAVEGGPTSLVLPLARVRKTVRLDPSVGNISKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEMYWLRDEF 1118
I P+ E K + + +A+ +SA+ FLAD R +V+AE+P +G +QKIL +WK L E+ Y + A DKER K L G+ P + +SE + L+LPLARV++ ++ DP VG ISK+ L+++TKATE F+ LA + RK+++ D+ + + WLRD+F
Sbjct: 32 IPVDPSQEETKDDDTNVAKPQSAYFHFLADKRPQVKAENPNATIGALQKILGTLWKELSAEDKEPYIQKALLDKERYAKAKERLLERGIDIEPEKPEVASEDI------LLLPLARVKRIIQADPDVGKISKDALIVITKATEQFIQYLAAKGQDSAMISKRKTIKDSDLLQVIHGHGSLDWLRDDF 212
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: A0A8K1FA27_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA27_PYTOL) HSP 1 Score: 101 bits (252), Expect = 8.670e-21 Identity = 65/216 (30.09%), Postives = 113/216 (52.31%), Query Frame = 3
Query: 633 SAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKERMKSELAAAGLTKLPARKSSSEAVEGGPTS--LVLPLARVRKTVRLDPSVGNISKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEMYWLRDEFREERSSVKKKQHKPEAGGAKAAGVKKAGVAAPKRGRSITSFFQKA*RSSCDD 1274
SA+ LF AD R V E+PGL +G +QK+++ WK L EE Y LA +DKER + E +LP ++ + VE PT + PL RV++ ++ DP V +S+E L+ ++KA+E+F LA +++ ++ ++ DVA + + WLR++F + + + + + G+K+ A ++SFFQ+ + D+
Sbjct: 9 SAYFLFAADKRKTVAQENPGLRIGEIQKLITAQWKELSAEEKEHYTTLAVQDKERYEREKLE-NPVELP-EANAQDGVEDEPTGNVCIYPLGRVKRIIQSDPDVNKVSREALIAISKASELFAQYLATKSYEQTLYNNKRQIKASDVARAIQTTSVLDWLREDFPDVKPAAATRSN-----GSKSTSDTATSRKAKATKAGVSSFFQQTANDTADE 217
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: W4H0Q5_9STRA (HMG box domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H0Q5_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.910e-20 Identity = 74/217 (34.10%), Postives = 112/217 (51.61%), Query Frame = 3
Query: 612 SKIARARSAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKERM---KSELAAAGLTKLPARKSSSEAVEGGPTSLVLPLARVRKTVRLDPSVGNISKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEMYWLRDEFREERS-SVKKKQHKPEAGGAKAAGVKKAGVAAPKRGRSITSFFQK 1250
+K+A+ SA+ FLA NR V AE+PGL +GP+QKILS W L E + +AA DKER K L G+ +++ + L LP ARV++ + DP V +SK+ ++ +TKATE+F+ LA + RK+V+ DV + + + WLRD+F E + V K K A + A + + ++ ITSFF +
Sbjct: 67 TKLAKPLSAYFHFLAANRAIVVAENPGLGIGPVQKILSTKWNELSAEAKEPFTTMAAADKERYLNDKQSLMDQGID----IEAAPRVPRNDESLLTLPSARVKRIMLTDPDVNKLSKDSVLAVTKATELFIHFLATKGHDSATISKRKTVKDSDVLTAIHSHAVLDWLRDDFPESKKVPVAAKLSKKSAAHSNVAATEASPSSSSSAKSKITSFFSR 279
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: A0A2D4BV20_PYTIN (HMG box domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV20_PYTIN) HSP 1 Score: 99.8 bits (247), Expect = 5.780e-20 Identity = 59/181 (32.60%), Postives = 101/181 (55.80%), Query Frame = 3
Query: 618 IARARSAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKERMKSELAAAGLTKLPARKSSSEAVEGGPTSLVLPLARVRKTVRLDPSVGNISKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEMYWLRDEFREERSSVKKKQHKP 1160
+ + RSA+ +F + R ++ +PGL VG +QK+++ WK L EE Y LAA+DKER + E + PA + VE + + PL RV++ ++ DP V +S+E L+ ++KA+E+F LA +++ ++ V+ DVA + P + WLRD+F + + S ++ KP
Sbjct: 4 VKKPRSAYFIFSGEKRKEITDANPGLRVGDVQKLITARWKELTPEEKXVYLDLAAKDKERYERERLENPVXDAPADVVAPVEVEH---ACLYPLGRVKRXIQSDPDVNKVSREALVAISKASELFAQYLATKSYEQTLFNNKRQVKASDVARAIHTTPVLDWLRDDFPDMKQSAATQKTKP 181
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: G4YKY3_PHYSP (HMG box domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YKY3_PHYSP) HSP 1 Score: 98.2 bits (243), Expect = 1.040e-19 Identity = 56/167 (33.53%), Postives = 93/167 (55.69%), Query Frame = 3
Query: 618 IARARSAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKERMKSELAAAGLTKLPARKSSSEAVEGGPTSLVLPLARVRKTVRLDPSVGNISKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEMYWLRDEF 1118
+ + +S+++LF + R +V E+PG +G +QKI+S WK L EE Y +LAA+DKER + EL ++ A ++ + + PL RVRK V+ DP VG ISK+ L+ + KA+E+F L +++ ++ V+ DV + + WLR++F
Sbjct: 4 VKKPQSSYLLFCNERRKQVMDENPGARIGDIQKIISAQWKELKPEEKEVYVQLAAKDKERYQQELL--DNPQIDAEPTAEGRAAHDSNACIYPLGRVRKIVQSDPDVGKISKDALIAIAKASELFAQFLGTKSYEQALYRNKRQVKASDVTRTIQTTASLDWLREDF 168
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: A0A7S2FZW8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZW8_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.500e-18 Identity = 56/168 (33.33%), Postives = 92/168 (54.76%), Query Frame = 3
Query: 615 KIARARSAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKERMKSELAAAGLTKLPARKSSSEAVEGGPTSLVLPLARVRKTVRLDPSVGNISKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEMYWLRDEF 1118
K+ R + A+ F R+ V PGL+V K L++ W+ L E E + A++ + + E+ + KSS + +V+P+ RVR+T +LDP V NI+KE L+ KATE F+A +A+ ++KI +GR++++ D+ D V P+ WLRD+F
Sbjct: 4 KLKRNQEAFTSFCHSYRETV----PGLSVLDQSKALADRWRSLSEAEKDSFMPKVADENQGHQREIIDQSTLPVEPAKSSKGKKDSSAFEMVIPVGRVRRTCKLDPDVKNITKEATALVAKATERFLAQIAEESFKISSLSGRRTLKTDDIRDCVNRLPQYEWLRDDF 167
BLAST of mRNA_P-lacustris_contig103.346.1 vs. uniprot
Match: D0P069_PHYIT (HMG box domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P069_PHYIT) HSP 1 Score: 92.8 bits (229), Expect = 2.930e-18 Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 3
Query: 618 IARARSAWMLFLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKERMKSELAAAGLTKLPARKSSSEAVEGGPTSLVLPLARVRKTVRLDPSVGNISKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEMYWLR 1109
+ + +S++++F + R +V E+PG VG +QKI+S WK L EE Y +LAA+DK R EL ++ + E G + + PL RVRK V+ DP VG +SK+ L+ +TKA+E+F L +++ ++ ++ DV + + WLR
Sbjct: 4 MKKPQSSYLIFCNERRKQVMDENPGARVGDIQKIISAQWKELKPEEKDVYVELAAKDKARYAQELL--DNPQVNEEPKAEEKTARGSHACIYPLGRVRKIVQSDPDVGKVSKDALVAITKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLR 165
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 110.5 |
| Seed ortholog evalue | 1.8e-21 |
| Seed eggNOG ortholog | 112098.XP_008611757.1 |
| Preferred name | HMGB2 |
| KEGG rclass | RC02795 |
| KEGG ko | ko:K03004,ko:K03506,ko:K08066,ko:K10802,ko:K11295,ko:K11296,ko:K11297,ko:K11656,ko:K15413 |
| KEGG Reaction | R00375,R00376,R00377,R00378,R00435,R00441,R00442,R00443 |
| KEGG Pathway | ko00230,ko00240,ko01100,ko03020,ko03030,ko03410,ko03420,ko04140,ko04217,ko04612,ko05152,ko05166,ko05168,ko05203,map00230,map00240,map01100,map03020,map03030,map03410,map03420,map04140,map04217,map04612,map05152,map05166,map05168,map05203 |
| KEGG Module | M00182,M00263 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000122,GO:0000217,GO:0000228,GO:0000400,GO:0000401,GO:0000402,GO:0000405,GO:0000723,GO:0000737,GO:0000785,GO:0000790,GO:0000793,GO:0000902,GO:0000976,GO:0001067,GO:0001158,GO:0001530,GO:0001654,GO:0001667,GO:0001708,GO:0001773,GO:0001775,GO:0001776,GO:0001780,GO:0001786,GO:0001816,GO:0001817,GO:0001818,GO:0001819,GO:0001932,GO:0001934,GO:0001935,GO:0001936,GO:0001938,GO:0002053,GO:0002119,GO:0002164,GO:0002200,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002250,GO:0002252,GO:0002253,GO:0002262,GO:0002263,GO:0002270,GO:0002274,GO:0002275,GO:0002281,GO:0002283,GO:0002285,GO:0002286,GO:0002287,GO:0002292,GO:0002293,GO:0002294,GO:0002312,GO:0002322,GO:0002366,GO:0002376,GO:0002407,GO:0002437,GO:0002443,GO:0002444,GO:0002446,GO:0002460,GO:0002520,GO:0002521,GO:0002562,GO:0002643,GO:0002682,GO:0002683,GO:0002684,GO:0002685,GO:0002687,GO:0002688,GO:0002690,GO:0002694,GO:0002695,GO:0002696,GO:0002697,GO:0002703,GO:0002706,GO:0002709,GO:0002755,GO:0002757,GO:0002758,GO:0002759,GO:0002764,GO:0002790,GO:0002791,GO:0002793,GO:0002819,GO:0002822,GO:0002831,GO:0002832,GO:0002834,GO:0002837,GO:0002840,GO:0002920,GO:0002921,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003681,GO:0003682,GO:0003684,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003725,GO:0003727,GO:0003824,GO:0003887,GO:0005102,GO:0005125,GO:0005178,GO:0005488,GO:0005515,GO:0005539,GO:0005543,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005730,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0005981,GO:0006109,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006266,GO:0006268,GO:0006275,GO:0006281,GO:0006282,GO:0006284,GO:0006308,GO:0006309,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006810,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006897,GO:0006909,GO:0006915,GO:0006921,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006954,GO:0006955,GO:0006974,GO:0006996,GO:0006997,GO:0007010,GO:0007154,GO:0007162,GO:0007165,GO:0007166,GO:0007204,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007346,GO:0007379,GO:0007389,GO:0007399,GO:0007423,GO:0007444,GO:0007548,GO:0007623,GO:0008047,GO:0008097,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0008201,GO:0008219,GO:0008283,GO:0008284,GO:0008289,GO:0008301,GO:0008348,GO:0008406,GO:0008584,GO:0008622,GO:0008623,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009306,GO:0009408,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0010033,GO:0010243,GO:0010464,GO:0010468,GO:0010469,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010594,GO:0010595,GO:0010596,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010631,GO:0010632,GO:0010633,GO:0010634,GO:0010646,GO:0010647,GO:0010648,GO:0010675,GO:0010676,GO:0010720,GO:0010858,GO:0010906,GO:0010907,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010975,GO:0010976,GO:0012501,GO:0012505,GO:0014070,GO:0014910,GO:0014911,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016055,GO:0016192,GO:0016444,GO:0016477,GO:0016604,GO:0016605,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0017025,GO:0017055,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0019725,GO:0019843,GO:0019887,GO:0019899,GO:0019904,GO:0019953,GO:0019955,GO:0019956,GO:0019958,GO:0022008,GO:0022407,GO:0022408,GO:0022409,GO:0022411,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030003,GO:0030029,GO:0030030,GO:0030036,GO:0030097,GO:0030098,GO:0030100,GO:0030141,GO:0030154,GO:0030155,GO:0030162,GO:0030182,GO:0030217,GO:0030234,GO:0030262,GO:0030295,GO:0030323,GO:0030324,GO:0030334,GO:0030335,GO:0030336,GO:0030545,GO:0030595,GO:0031010,GO:0031099,GO:0031100,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031333,GO:0031344,GO:0031346,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031410,GO:0031491,GO:0031493,GO:0031497,GO:0031532,GO:0031960,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032069,GO:0032070,GO:0032071,GO:0032072,GO:0032075,GO:0032101,GO:0032102,GO:0032103,GO:0032147,GO:0032200,GO:0032268,GO:0032270,GO:0032386,GO:0032387,GO:0032392,GO:0032423,GO:0032425,GO:0032479,GO:0032481,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032508,GO:0032640,GO:0032642,GO:0032647,GO:0032648,GO:0032649,GO:0032651,GO:0032652,GO:0032653,GO:0032655,GO:0032675,GO:0032677,GO:0032680,GO:0032689,GO:0032722,GO:0032727,GO:0032728,GO:0032731,GO:0032732,GO:0032733,GO:0032735,GO:0032755,GO:0032757,GO:0032760,GO:0032868,GO:0032872,GO:0032874,GO:0032879,GO:0032880,GO:0032881,GO:0032940,GO:0032943,GO:0032944,GO:0032946,GO:0032989,GO:0032991,GO:0033032,GO:0033034,GO:0033036,GO:0033151,GO:0033157,GO:0033218,GO:0033365,GO:0033554,GO:0033674,GO:0033993,GO:0034061,GO:0034097,GO:0034121,GO:0034123,GO:0034134,GO:0034135,GO:0034137,GO:0034142,GO:0034143,GO:0034145,GO:0034162,GO:0034163,GO:0034165,GO:0034284,GO:0034341,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034728,GO:0034774,GO:0035218,GO:0035282,GO:0035295,GO:0035326,GO:0035710,GO:0035711,GO:0035767,GO:0035868,GO:0036230,GO:0036336,GO:0040011,GO:0040012,GO:0040013,GO:0040017,GO:0040025,GO:0042056,GO:0042088,GO:0042093,GO:0042100,GO:0042102,GO:0042104,GO:0042110,GO:0042113,GO:0042116,GO:0042119,GO:0042127,GO:0042129,GO:0042221,GO:0042277,GO:0042325,GO:0042327,GO:0042330,GO:0042393,GO:0042493,GO:0042575,GO:0042592,GO:0042742,GO:0042766,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043277,GO:0043280,GO:0043281,GO:0043299,GO:0043312,GO:0043367,GO:0043370,GO:0043371,GO:0043388,GO:0043408,GO:0043410,GO:0043434,GO:0043467,GO:0043470,GO:0043471,GO:0043535,GO:0043536,GO:0043537,GO:0043542,GO:0043549,GO:0043565,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044378,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0045055,GO:0045063,GO:0045087,GO:0045088,GO:0045089,GO:0045121,GO:0045137,GO:0045165,GO:0045184,GO:0045185,GO:0045321,GO:0045322,GO:0045577,GO:0045578,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045597,GO:0045619,GO:0045620,GO:0045637,GO:0045638,GO:0045639,GO:0045646,GO:0045648,GO:0045652,GO:0045654,GO:0045661,GO:0045663,GO:0045664,GO:0045666,GO:0045739,GO:0045765,GO:0045766,GO:0045785,GO:0045787,GO:0045806,GO:0045819,GO:0045859,GO:0045860,GO:0045862,GO:0045892,GO:0045893,GO:0045898,GO:0045913,GO:0045931,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046006,GO:0046328,GO:0046330,GO:0046483,GO:0046546,GO:0046631,GO:0046632,GO:0046634,GO:0046636,GO:0046637,GO:0046639,GO:0046649,GO:0046651,GO:0046661,GO:0046700,GO:0046822,GO:0046823,GO:0046825,GO:0046826,GO:0046903,GO:0046982,GO:0046983,GO:0048018,GO:0048232,GO:0048468,GO:0048471,GO:0048511,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048771,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0048878,GO:0050663,GO:0050670,GO:0050671,GO:0050673,GO:0050678,GO:0050679,GO:0050704,GO:0050706,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050716,GO:0050718,GO:0050727,GO:0050764,GO:0050765,GO:0050767,GO:0050769,GO:0050776,GO:0050777,GO:0050778,GO:0050786,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050829,GO:0050830,GO:0050831,GO:0050839,GO:0050863,GO:0050864,GO:0050865,GO:0050866,GO:0050867,GO:0050868,GO:0050869,GO:0050870,GO:0050896,GO:0050900,GO:0050918,GO:0050920,GO:0050921,GO:0050926,GO:0050927,GO:0050930,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051051,GO:0051052,GO:0051053,GO:0051054,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051103,GO:0051105,GO:0051106,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051224,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051249,GO:0051250,GO:0051251,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051271,GO:0051272,GO:0051276,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051384,GO:0051450,GO:0051457,GO:0051480,GO:0051641,GO:0051651,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051861,GO:0051960,GO:0051962,GO:0052547,GO:0052548,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0060205,GO:0060249,GO:0060255,GO:0060260,GO:0060284,GO:0060326,GO:0060341,GO:0060429,GO:0060541,GO:0060548,GO:0060627,GO:0060633,GO:0061041,GO:0061458,GO:0061695,GO:0062012,GO:0062013,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070182,GO:0070201,GO:0070302,GO:0070304,GO:0070372,GO:0070374,GO:0070491,GO:0070555,GO:0070603,GO:0070661,GO:0070663,GO:0070665,GO:0070727,GO:0070873,GO:0070875,GO:0070887,GO:0071103,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071347,GO:0071396,GO:0071637,GO:0071639,GO:0071640,GO:0071642,GO:0071675,GO:0071677,GO:0071702,GO:0071704,GO:0071705,GO:0071706,GO:0071824,GO:0071840,GO:0071897,GO:0071944,GO:0072091,GO:0072341,GO:0072503,GO:0072507,GO:0072595,GO:0080090,GO:0080134,GO:0080135,GO:0090025,GO:0090026,GO:0090087,GO:0090130,GO:0090132,GO:0090303,GO:0090304,GO:0090305,GO:0090317,GO:0097100,GO:0097159,GO:0097194,GO:0097350,GO:0097367,GO:0097458,GO:0097708,GO:0098542,GO:0098589,GO:0098657,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099503,GO:0101002,GO:0120025,GO:0120035,GO:0120036,GO:0140097,GO:0140110,GO:0198738,GO:1901222,GO:1901224,GO:1901342,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901652,GO:1901681,GO:1901698,GO:1901700,GO:1901701,GO:1902041,GO:1902042,GO:1902044,GO:1902105,GO:1902106,GO:1902107,GO:1902494,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1902739,GO:1902741,GO:1903034,GO:1903036,GO:1903037,GO:1903038,GO:1903039,GO:1903506,GO:1903507,GO:1903508,GO:1903530,GO:1903532,GO:1903555,GO:1903557,GO:1903670,GO:1903672,GO:1903706,GO:1903707,GO:1903708,GO:1903827,GO:1903828,GO:1904018,GO:1904813,GO:1904949,GO:1904950,GO:1904951,GO:1905114,GO:1905562,GO:1905564,GO:1990234,GO:1990774,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000116,GO:2000142,GO:2000143,GO:2000145,GO:2000146,GO:2000147,GO:2000425,GO:2000426,GO:2000514,GO:2000515,GO:2000778,GO:2000819,GO:2001020,GO:2001022,GO:2001056,GO:2001141,GO:2001198,GO:2001200,GO:2001233,GO:2001234,GO:2001236,GO:2001237 |
| EggNOG free text desc. | protein heterodimerization activity |
| EggNOG OGs | COG5208@1,COG5648@1,KOG0381@2759,KOG1657@2759 |
| Ec32 ortholog description | DPB3 class protein with histone-like transcription factor (NF-YC subunit) and high mobility group domains |
| Ec32 ortholog | Ec-03_001170.1 |
| EC | 2.7.7.7 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | br01611,ko00000,ko00001,ko00002,ko01000,ko03000,ko03021,ko03032,ko03036,ko03400,ko04147 |
| Exons | 7 |
| Model size | 1717 |
| Cds size | 1209 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815300.8028378-UTR-P-lacustris_contig103:78814..78861 | 1622815300.8028378-UTR-P-lacustris_contig103:78814..78861 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig103 78815..78861 + |
| 1693493461.4071536-UTR-P-lacustris_contig103:78814..78861 | 1693493461.4071536-UTR-P-lacustris_contig103:78814..78861 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig103 78815..78861 + |
| 1622815300.8906841-UTR-P-lacustris_contig103:89460..89921 | 1622815300.8906841-UTR-P-lacustris_contig103:89460..89921 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig103 89461..89921 + |
| 1693493461.487539-UTR-P-lacustris_contig103:89460..89921 | 1693493461.487539-UTR-P-lacustris_contig103:89460..89921 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig103 89461..89921 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815300.8139083-CDS-P-lacustris_contig103:78861..79012 | 1622815300.8139083-CDS-P-lacustris_contig103:78861..79012 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 78862..79012 + |
| 1693493461.422547-CDS-P-lacustris_contig103:78861..79012 | 1693493461.422547-CDS-P-lacustris_contig103:78861..79012 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 78862..79012 + |
| 1622815300.821863-CDS-P-lacustris_contig103:80575..81048 | 1622815300.821863-CDS-P-lacustris_contig103:80575..81048 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 80576..81048 + |
| 1693493461.4316566-CDS-P-lacustris_contig103:80575..81048 | 1693493461.4316566-CDS-P-lacustris_contig103:80575..81048 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 80576..81048 + |
| 1622815300.836242-CDS-P-lacustris_contig103:84235..84337 | 1622815300.836242-CDS-P-lacustris_contig103:84235..84337 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 84236..84337 + |
| 1693493461.4414098-CDS-P-lacustris_contig103:84235..84337 | 1693493461.4414098-CDS-P-lacustris_contig103:84235..84337 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 84236..84337 + |
| 1622815300.849615-CDS-P-lacustris_contig103:84826..84903 | 1622815300.849615-CDS-P-lacustris_contig103:84826..84903 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 84827..84903 + |
| 1693493461.4510863-CDS-P-lacustris_contig103:84826..84903 | 1693493461.4510863-CDS-P-lacustris_contig103:84826..84903 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 84827..84903 + |
| 1622815300.8598638-CDS-P-lacustris_contig103:88141..88325 | 1622815300.8598638-CDS-P-lacustris_contig103:88141..88325 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 88142..88325 + |
| 1693493461.4604099-CDS-P-lacustris_contig103:88141..88325 | 1693493461.4604099-CDS-P-lacustris_contig103:88141..88325 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 88142..88325 + |
| 1622815300.8682525-CDS-P-lacustris_contig103:88841..88939 | 1622815300.8682525-CDS-P-lacustris_contig103:88841..88939 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 88842..88939 + |
| 1693493461.4691238-CDS-P-lacustris_contig103:88841..88939 | 1693493461.4691238-CDS-P-lacustris_contig103:88841..88939 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 88842..88939 + |
| 1622815300.880577-CDS-P-lacustris_contig103:89336..89460 | 1622815300.880577-CDS-P-lacustris_contig103:89336..89460 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 89337..89460 + |
| 1693493461.4783442-CDS-P-lacustris_contig103:89336..89460 | 1693493461.4783442-CDS-P-lacustris_contig103:89336..89460 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig103 89337..89460 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig103.346.1 >prot_P-lacustris_contig103.346.1 ID=prot_P-lacustris_contig103.346.1|Name=mRNA_P-lacustris_contig103.346.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=403bp
MAGPPLVPSSSSNTIANVQKGDEMEDQPCPKRRRRSLDKMTPAADEPTLE EAPQEQQLGEMEDVDADADADADSAAPEESGGGDTGAPGDTDPDAADRTT DTQLVQEGTDAKGEEENEINHGPEQEQEEEEDDDQEQPEEEEEEGEEEEE EEEEEEEEEEEEEEEEAQEGVGEEGIEASPAHREKPEGSKIARARSAWML FLADNRDKVRAEHPGLAVGPMQKILSEMWKILGEEEVARYAKLAAEDKER MKSELAAAGLTKLPARKSSSEAVEGGPTSLVLPLARVRKTVRLDPSVGNI SKEGLMLLTKATEVFMASLADHAWKIGRQTGRKSVRPCDVADFVFAAPEM YWLRDEFREERSSVKKKQHKPEAGGAKAAGVKKAGVAAPKRGRSITSFFQ KA* back to topmRNA from alignment at P-lacustris_contig103:78815..89921+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig103.346.1 ID=mRNA_P-lacustris_contig103.346.1|Name=mRNA_P-lacustris_contig103.346.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=11107bp|location=Sequence derived from alignment at P-lacustris_contig103:78815..89921+ (Pleurocladia lacustris SAG_25_93) CCTTCTCTCGCTGCTCTGGTTTCTCTCTGCCCAGTGAAAGCGAAAGCATG
GCCGGGCCTCCGCTGGTGCCTTCTTCCTCCAGCAACACCATCGCGAACGT
TCAGAAGGGCGATGAAATGGAAGATCAGCCATGTCCGAAGCGAAGGCGAA
GATCGCTTGACAAGATGACCCCAGCAGCAGACGAGCCAACGCTAGAGGGT
GAGTGCGTTGGGAGGTGACATCGAAAATCAAGAGAGGTCTGTGAGGTTGA
ATGATTAGCGTTCATGATAAGGGAAGAGCCCGTGTTCATCAGAGGGTACT
TGCAGATTAGTTCTGTTTTTAAATCAAGTGTTTTGAATTGTGTGTTACTC
AACGACAAACTCTCTACAACACCCAAAACAAGGATTCACATTGTACATCA
AGTTACGGTCATGTATCTCACAATTCCCACCGACCTTGCCATAAATAGTT
ATTCGTCGATAAGCGCATGACGAAATGAGAAAACAGCGGTGATTTCGTAG
AGAGGCTGATTTTTGTGAAGCGTCAACACCACGTTCAACCTTGGTCGTGC
CCTCAACCTAAATCACTGCTGTGCTCGGCCTCTCCCTTGAGGCAGAGACC
ACCCCGGTGGAGGTTGTCGAGATGGAATTACATAATTATTATTGCTGCTC
TATGTGCAATACTTTCGAGCTAAACAAGGTAGGGTGCACCCGTACAAGTA
GAATTGCTCTGTCGGTGTGACCGCCAATTCCAGGTGGACAAGGAAAATGG
TTCACAGTCGGCTGCAAGTAGCGTTGTGTCGGCAAGGACAAATTCCGCGC
TACTGCTGCACATGGCGGTTTGCTGCTGCGCGACAGATGAGAGAGGGCGA
GGGCAACACCACGAAACGAATGAATCCAGGCACTGCAATATCAATACCTC
TGTACGAAGTTCAGGAGGTCCAGCGCTTCACCGGAATGCTCCTGCCTCGT
ACCAGCGATATGTATCGTTTCATAGACGCTTCGACACGAACGTGACTGAT
GCATGCCACTGCTGCCTCTCAACAGATGTCAAACATGTCAAGCATGGCAG
TACGGTATGGAGGTGTGAGGCATGCTATGCATATGAGGCCATGGCTTCAA
ACCTTCCTCGTTTTCTCGAGGCACGCGGTGTTTTTCTTGTGCGAAACCAG
CAGTTACTCCAGGGCTTTAGTGTACAGTAGTGTCCTCAACCCGGACAGTT
CGCAGCTAGCTGTCAATACGTTCTCTACATTCAGCCCAAGAATCACTCGC
CACCCCGAGGGTCACAGCAGCGGCAGAACGCTCTGCAAGAAATGCCCGAC
GTTTTCATGGAAAGTATTCTAGCACGTTCGAAAACACAAACAGGCTGGAC
GGAGCCAGCGGCGGCAACATGATTTCTCGTTGGGATGCTTCCAGGCGGGC
TTTGACAACAACCTGGAACCAGCAGACATTCCACCTATCTTTTTATCCAT
CTAACTATGTATCAGCTAGGTGCAATGATGACGACAACCGAAGCAAGCCT
GGTATTGTGGAGTGTTGTAGCGCCAAGGAACCTCTTGACTCTTGTGTTCA
CTTGTATGTATGATAGAGCAAAGCAGCGAAACACTAGCAGTGTCCCCGTC
GACACAAGGTGCCGTTAGCTTGTCAGCTAGGGTATCACGGATCACGGGGG
AGGCTAGTACCAAAGCCCAGGTTCTTCTCCCCATCCGATGGTTTACCGTC
TGCTTCCCCCTCCTCAACCCCCCCCAACTACAACACCAACCGCCATCAAT
AGCCGGCTCAGAGGCACCTCAGGAGCAGCAGCTGGGCGAGATGGAAGACG
TTGATGCTGATGCTGATGCTGATGCTGATTCCGCGGCCCCAGAGGAGAGC
GGAGGCGGGGACACCGGCGCGCCTGGCGATACCGACCCAGACGCCGCCGA
TCGCACGACGGACACGCAATTAGTGCAGGAGGGCACGGACGCCAAGGGAG
AGGAGGAGAATGAAATCAATCATGGGCCAGAGCAAGAGCAGGAGGAAGAA
GAGGACGACGATCAAGAGCAGCCAGAGGAGGAAGAGGAGGAGGGAGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGCGCAGGAGGGTGTGGGGGAAGAGGGGATCGAGGCATCGCCA
GCACATCGGGAGAAGCCCGAAGGGAGCAAGATAGCCAGGGCACGGTCGGC
GTGGATGCTCTTCCTTGCTGATAACCGAGATAAGGTGAGATGGAAATTTT
TCATGCATGCCAATCCCCTGTGGGCCTGACGCTCCTCTCGTATGCTGGCG
CACCAATACTGGGTGCTGATGTCGTTTTCGTCTACTTGACCGCCTTCTGT
CTTGAGGTGCTCCAATGCTACTGTAATATACTGCGGCCTCCGTTTGCATC
ATGCGTCGACCTGTGGACCTGTCTTTGGACCGATCTGTCTCATGATCGTT
TCCTGTTTCCGATCTTCGCTTTTCACCTCGTTTCATCTCACTTCACTCTG
CCTGCCACTTTTGGTTCAGTCCAGTGGCAGGAGCGTGTTGTGTGCACAGT
CAGCTATGTTGCCATACATCGTCATGACCGTCATGACCAAGAGTAGAGAA
CGAACTCAACAAGAGCAACAAGAGCAACTGTCGTATTGCGTAGTGGTGTT
TAGGTCGATCGAGATGCGGGAGGATCCAACGAGGTCGAAAGCGCGTGCGC
GATGTTGCTCAGTGCAAAATGCGTGAGGGGGTTGTTCCTCCTGTCTGCGG
CACCACTTAACTGAGAAACACCGATGCTGTGCTTTGGTAAGTTTTAGGCT
TGTCCATTGAGGTCATGCCGGCTCTACTCATTGCACTTAGCTTGGCCGAG
GCAGCAGCAGTAGTCGCCGTGCCAGTAGTGAATTTGTCGAAGATTATAGC
GCTTCGATGGAAGGAAAGCCTGTCATGTTGAGATATTGTCTTTTGCGTGT
TTGGATCTTTTCATGTTGAGATTTCATCGTGTTGAGATTTTTCCTGTTGA
TATCATGTCATCGTGAGATCTTGTCTTGGCTTTAGATCTTTGATGTTGAG
ATCTTCCCAGCGGTCTGGCACCAACCACCGATCATGCTAACAAGCAGCAT
CGCGTGGTCCTCTGATGTCTGAGTTGATGTCCCGTTAGATCATGTGGCAT
CAGTTCTAACATCATAAACTTGCCCAAACCATACCCTGGTTCCACATGAT
TGACTTAGTCCCTGGAGGACAAGGAGTGGTCGTCACATGGGCCCGATAGG
GGTGGGGGGGAATTTGCTTTGGTTTCTGTTTGCTGTTGCTAGGCATGCCG
TTTTCCATATTTGTTGCCGTCGCTTTTCAGTTCGTACCTTCTCTGCGGCG
CGCCTCTCAACTGAGATTTTCAAGCGCGGGTGACAAAGAAGAATTGGTCA
GGTCCGGCGTTGCATGCCTTCATTTTTGACAAGAGGTGCATACCATAGGT
TTCAACTCGAGGACGCTCAAGCGGCTCCTTCGATTCATATTTTTTCCAAC
ACTGTATCAATGAAAGCAGACTTCCTCGCCACATACCCCCAAGACCCCAT
TGTAGGGTAGCAGTTTCGAGCACCTCGTAGGGCAGATCGAACGAGCATTC
ACTCTCACTTGGACAGCGACCAACGACCCGATCCCACGATTACTGCAAGA
TCGAACAGGGAATGGCTGTACTTGCTAAAATGCGTCCGTGAGGGCTCAAG
CCCATGCAGGCGAGTGCCTGTATCCACTATTCGGATATGATATTTTGACC
AATAATACTTGCGGGGCCCCTCTTTGCTCTTGTTGTTGTCTTCACATTAA
ACTCGTATGTCAGTTGCTAATCCCAACATCATCATCTAGCAAAAGACTCT
CGGCCCGTGGCCACAAAAATGCTAGAGCCATCAGAGGATCTAGAGAGCAC
GCACCCTAAGCAAGAAAAGGGTACACAAGCCCGACGAGGTACACCTAAAA
TCCCTGCAGTGTAACATGCGTGCGCACCGCTGAACTACTACACCTCCGTA
AACCTCATTCAACTACAGCAGCATCCCCCCCCCCTCCCTGTCCCACTAAT
GTTTTGCCGACTACAGCGTATTGCTGTCTGGAGTGCTGTCTGTACGAAAA
CACCGCCGTGGTAGGCATGGAAACAAGAAGCTGGAGCACGCAGCTGCTGT
CTGAAGTGCTGCCAGAATGCGTCCACGGACACACAGCAGTGAAAAAGAAC
AACAACAAGAGCCATCATTGAAATTGACAATCACCCGAATCTATCCCGAT
TGCCTGTGTTAGGTACAGCGGTGCAAGCATCGACACTGTTTAGGAATCGT
TCCACATTCTCATTGAAGGGGTCTTCCACGATGCAGGTGCACAGTTAAGG
CACCCGGGATATCCGCGCCATCTCTGCCGCGTCTCTCTACAAAACCAGTG
ACGTCATCACACACGCCCAACACCTATACACATGCCTATATTCAGGGGGA
AAAAACGAAAATAATTGACAACACATAATGTTTGTCCGTGCGCCACGGTT
CGATGTCGTCCGAATGCCGCTGCTCCGGTGCCGCTGCTCCGGTGCCGCTG
CTCCGGTGCCTCTGTGGCCCTTCCTAGCACGACCACACTCGACCCGCTCC
GTCCGTACACGCTCTCGTTGCTGTCCTTCCCAGTCGGTTCCTCGCTTTCT
CCCTTGTTGCATTTAGGGTTCTTGGTCTGGAAAATAAAAATTCTCGCGCC
GAAGGGGTCAACCAGCCCAATCTTCGGCTCGTCGCCACCTGCTCCCTCCT
CCTTGGTTGGCGAAGCCAGGTTACTGAGACATTACATCTCCCTCTAGCAA
ACCTAGGGCAGTGTAGTGTCCTTCCACCTTTCTGGTGGTGTCTGCCTCCG
CGCACAAAAATAAGACGGGCATTGCTGCCTACGCCGACGGCCATAGCGGC
CCGCGCATCTGTACTTTTGTACCTAACATACCAGTGCCGACCCAGCTCTA
CCACTACGCACGCCTCGCGGCGGGTGCGCAGTACAGCAAGAAGGTATCGG
TCCCTTGAGGGTGAGTCTAGCCTTGCTCGCTAGAAAGACCCCCCTCGCGA
CGGGCCATGCCTAAGCAAAAGCCTTGCTCTACGAATGAAATAAAGGGCTC
GTATCCACCTACCCGCAGTCTCACATGCTTCCCTACTACTGCTGTTGTCG
TACTTCTTTTGTAAAGTATTGAAAAATGCTTAGGTGAACCATTGTACATG
TGGTATTCGACGAGATTGCAAGCCTCCTGTTAATTTGTTCTATGCGTACA
CTGTCTCTTACAGGGCCGTGTGGTCCATGTGCATCGACAATTGAGACATG
CCTTGCGTGCACTGCCGACAAAAGTTGTTTCACCATTGCCTTACCTCATA
CCTTGTTTTCGGTGAAAAGTGTTTTCCGTGATGCCCCCGCCCCCCCGCTC
CCCGTCCCCAAACGAAAAAAGGTTCGCGCGGAACACCCAGGGCTTGCTGT
CGGCCCAATGCAGAAAATTCTTAGCGAGATGTGGAAAATTCTTGGGGAGG
AGGAGGTCGCACGATACGCCAAGGTGTGGATTCGACTGGTTTGTATTTGA
TTGGATTCGGCTTGAGATGCGAGCACCACCCGAACTCATGTCGGAATTCC
GGGTTCCTGCTTTTGTTTAGATGTGTGCCATGCTCGATGAGCCTCGTACA
TGTATGCAGTTCGAGTAGCACAACCTCTTCTTGGTCGTCACCGTGACGAT
AATGAGTTTCTTGATTTGATGCATTTCGGTGTGGCGTCATCTCACGCGGC
TGTCAAACCAGACCATCAGCGCACACACAAAAACGCCCGAAAAAACGTCT
CGTAAGCCGTCCCCGCTAATGCTGCCAAAGTTCGGTTTGGTTCAGCCGAT
TCGCCCTGCCGGGGCTACAGTAGTATCAGTATCAGAATATAACATGCTGA
CGAGGTCGGCTATAACCTCTTCGCGTTTCATTTTCTTCGATCTGTCCGCT
TGGTGATGGATGGTGTACTGATGCTGTTATGTATGTAATGTACTTGAATT
GTACCACCACAGCTGGCGGCGGAAGACAAGGAACGGATGAAGAGCGAGCT
CGCAGCGGCGGGGCTGACCAAGCTGCCCGCTAGGAAGAGGTGCCCCTTGC
TTGCGCTGTTTTTGTTTTTGTTTGTTTTTGTTTTTGTTTTTGCTGATAAT
TGCTCGTCTTCTTTCATCCCCTTTTTCATCTTCTTATCTTGATGCTTCTG
CCCCTGGAATGTTTGAGCTACGCATAGAAGGCATAAAATCCCATCATTTG
ACGAGAATCGTTTGTTGCGGAGAGACGACGCGCCGGCTGTGATGGAGAGA
GCAAGCGGAAAATGAGGGAGATAAGCTGTTTTGTGGTGGTAGCTCCGTCA
GAGTCCGAAGAAGAAAGGTTGAGTCAAGACCTTGTTATTTGAGACTGACA
CACAGCAACCAGAGCATCTGCTCCGCGAGGGGTCCCGTCACATCACCAGG
GTCCCCTAACACATGCAGATCTGTGTCCGATGCCGGATACACCAAACAGC
CCTCCTATTCGGTACTCGGACACAATCTATGGTAGCCTTCTCATCACCAA
GGTAAAACGGAAATCATAACCTTGAATCTCAGGCTCCTTTTTCTGCACTA
CAATATCAACAAAGAATAGCCCTCTCGAGAAATATTCTCTATATTTCTCA
AGAATAGCCAAAACATAAGAATCATAGTCAGATAATACTGCATCATCCAC
TCGAATAAAATCCTCAAATGAATCCATATTTCAACTTATTGACCAGTACA
AATAAGCATTCGGAAAGCACACAGGCCTCAACCATTGCTCATCAATACAC
GCCAATTTCCATCCTCCAGTATACCTTACAAAAAGCATAACCAGCAAACA
GATGAAGTAATAACCTCCACCCATACTACTGAAGCTTTCAATCCTCCTCA
ACCAATAGTTATGCAATATAAACCAATAGCCAACAGCCCCCCTGTCGTGG
CATCTTTCCCGAATATAATACCAAGATGCACTTAGTTCCCGCTACAAGAA
TCAATCATCGAGCAACCCTAGATACGCAAAGAGGAAACCAACCGTATAGA
ACTCCCCAAATCGCTGCTGCTTCTGCAGCTAGAATCATGGCACACAATTC
CCCCAGGATTTTAGCTGCAGCAGCAGTGATTTTATCGCAGTCGCGCCCCG
CACCGAAACAACCGAACAAACAAATGACAACATCACAGGGAAACGAAGTG
GCTTGCACGAAAAAGAAATGAACAGATAAATAACCAAAATAACCAAAACA
AACGCTAGCGTTCACCCCCATACTGGTGCAAACAGAAAAAAAAATCAACG
AATATTCATCACATAATCACGGTGAGCACAAAACAAGTCTCCTTGCGAAG
CGGTTTCGTGAGGAAGTCAGCACACTAAAGGTGTGATGGTGCATGTCCTA
ACGTGAATTCCCCCCCCGAAATACCCGCTGACAAAGTACAGCATACAAGC
AAAACAAAAGCAACGTGTCACGCCCCAAGTTCACGGCCCTGGTTTGCCCG
TGTACTGGGGAAGCAATGGACTTGTCGGGCATGTTCATGTCAGAGGGAGG
GGAAGATGATATCGGTGTCGGAATCAATCAGCGTTGCGTGCTCATCGAAA
ATCACGAAATTACCGGTATCCCCCCCTAACTCCGTACATCCAGTCCACAC
GATTTTCACGGCTGATGATGCAGGTCAAGTACTTCCATACTCATGTAAAA
GTTCTCAGCACCGTGTACAGCGCTAAGTGATCAGGAAACAAAGGGTTGCA
AAGTCTCTGTTGTACCGTCACGACTATATGCTAATCTCTAGCATAAGATG
ATCAGTCCTCCGAAACAAATCACATAGATCGAGAAGATTCAACAATAGCA
CAGGGCCAAAGTTCGCATCAAAATATTTGACGTGCATCAAAAACCACTCA
CGCTTGTGCATGAAATTTCATCCAAAGCTAGAAAATGCCGACGCGATTGT
CCAAACCAAATAACAAACCAACCGAATAAATATCAAAACAACAGCAAACA
AACACAAAAACAACAATAAAACGCGGGCATAGTAATGTCATCGTACCGAG
GACAACGCTTAGTTATTCCAGCCAGGCCATCTCGTCCGCAGCCGCTGGTC
TTGTACGACGTGTCCCCCGATACCCGATACACCGCCCGTCGCCGCCGTTG
TTGCGCTGGGTGTAGCTGCTGACCGCCCCCCCAGCCATCGCGGTGGGGAG
AAAACCACCACAACCGCCGCCGACACCGTCGATCCACCGCTCGGCCGCCA
CAGCCTGCCAACATTCCGTTCATTTCCCCCGCCAACGCAAAGCGACAAAG
GGAACAACCATCCGCCGCCGCCGCTGCCGCCGAGGCAGCCTGCAAAACCT
GCGGCCCTCCCCCCCGGCCAACACAACCAACGGGACACTAGCCAGACCAT
GCTCTCCGGCAACTCCCAGGTGGTGTCCACTATCCACGAGCGAACGGGTG
CGCCACGCCCCCGGCGATCCTCCACGTGCGGCGCCGTGACCACTCACCCC
TATCGAAAGGGTGCCGGGATGTGATCCCGGTGACAATGTTGGTGCTGCCG
CTGTTGTTGCCGTCTTTGTTGTTGCAGTTACTGTCGCGGCTGCTGCTGCT
GCTGCTGCTGCTGGCGTCCTGATCGCTATCGTCCGGGCAGCTACGGACAT
TTTTACTGCTGTCACCGTTGTCGCAAAACACGGTACCTGGATCGAACGGG
TAGGCGGACATCCCCTGCTCCCGGTCACGCACAACACCAACGCCAATACC
CACTACCCAGCAACCGGTTATCGATATATCGTGTTTGGTGGTGGTAGCTC
CGTCGGAGGCCGAAGGAGAAAGGAAAGGTTGAGTCAAGACCTTGTTATTA
GAGACTGACACACAGCAACCAGAGCATCTGCTCCGCGAGGGGTCCCGTCA
CATCACCAGGGTCCCCTAACACATGCAGATCTGTGTCCGATGCCGGATAC
ACCAAACATAAGCGCAGCCCCCTCTTCGTGTGTGGGCCTCCTTTCTTTGT
GTGGAAACCCCGGCGGGAGAAGGGGGGGCAGCGAGCCAAGAACACCCACA
ACGGTGATGCGAAACACTAGACTAGACATTAATGGGCAAGGAGGAGATAA
AGGGACCACAAACTTAGTGAAGGACGAACAAACTGTTTCGACACCGGTAA
AGTGCCTGGAACATGGAAACTGCACCGCCGTTGAAGGAGTGTTTGGCCAC
ATGGAAATATGCTCGTGGTTGTTGCTCTCTCTTGCTCCTCTTCTTACATG
AAGCAGTCCGTGCAGCCTAAACTCGGCTGAACGTCCGATCTACCTCACTC
GCTCCCCCCCCGCGCGCGCCATCGTAGCTCTTCCGAGGCCGTCGAGGGCG
GTCCGACGAGCCTGGTGCTCCCTCTGGCAAGAGTTCGCAAGACCGTACGG
CTCGACCCTTCCGTGGGGAACATCTCCAAGGAGGGTTTAATGTTATTGAC
GAAGGCGACCGAGGTTTTCATGGCTAGCTTGGCGGACCACGCGTGGAAGA
TCGGGAGACAGGTGTGTCGTCGTCGTCGTCGTCGTTGTTGTTGTTGTTGT
TGTTTTTGTAGGTCCATGATTTCTGTCGGGGAACAGACGCCCTCCGTAGC
TTAAATTCAACCCGCTTCGCTGGGTTAGGCGGTTGGCGATGAGCTATGCT
CTCCTATTGGGGGACTTGGATTGACAGAGGCTAACCGTTAGCAAGTACGT
GGAGAGTGATATCCAAGCGTAAGGGCATGCATTCAACCAGCAGCGTAGCG
TAGCGAGTTGACCATTGTGAGGGGCAAGCAGTAGGAAAGATGGTTCGCTC
GTCTTGTGCTTAGATGAAAGTGGGCAAGGGCCTGCAAATCGCGGCAAGCA
ACTGTGAAGACAACCTCCCCATGGCCGTCCCAAAACCAACGTGGCCCGTC
CCCACTTTGTCGGGGTCCGAGGTCCATGGCGTATTCATACAACGGCATGC
ATGGTCATGAGTACTTCCCCCAACCCCGATCAATTTGTTCCTTGCACGCC
CTCAACCCTTCGCCGTTTTGTTTCAAGACGGGGCGCAAGTCTGTGAGGCC
TTGCGATGTTGCCGACTTCGTGTTCGCCGCCCCGGAGATGTACTGGCTGC
GGGACGAGTTTCGCGAAGAGCGCAGGTAGGTGCTGATCCAACTGATTGCT
GTCTGTGATTTTTTTGTTGTTGTTGTGCTGTTGAGGGTCACGATCTCCTG
GGTTCTTACTAAACAAGGGAGTAGGTATTGCCCATGCATCTCCACCACCG
CTCGCACAGAACGCTCCGCGGCCTTCAGCGCTGACGCCGAGCGAATATGA
TTGGGCGAAGAAGGGCGATCCGTGCCAACTTTTCGAGAAACAATTTTCCT
GAATTTTTCAAGCCTCCTGCCGGCAACAAGGAACGTTGTGCGATGATTCA
TCGACGACTTGTCGGAGGAGCAACATGCCACACGTGGATGTGTTGTGAAT
CTGGCTGGGAAGAGTTTACCAACATGTTGTTGGCCCCCCCCCCCTCCTCC
CCATTATCATCGCTTTGCCTAGCTCCGTGAAGAAGAAGCAACACAAGCCC
GAGGCGGGTGGCGCGAAGGCCGCGGGGGTGAAAAAGGCGGGCGTTGCCGC
ACCCAAAAGGGGAAGGTCCATCACCTCGTTCTTCCAGAAAGCATAGCGGT
CTTCTTGTGATGATATTTAGCGTGAATTGAAATGATATCCTTGGCATGGC
TTGTTTCGTGCTGCGCTTCTGCTAGTGCTGGTGCTGATACTTGTGACGCA
GTATCCCCTGGTTGTCGCCGGAAAAGTCTGTAGAATACTCTATATGGCCA
CCATGTTTTTTTGGGGGATTTTCGGAGATTCCGGGGGAGTGGAGGTGGGG
GATTCATCAGACACCATACACGCCTGACTTGCAACGTCGACGTTAACAGC
CGTGTAGGCGTCCCGCCGGCGTTGAGATTGGCGGCAGGGAGGCTGATGAG
CACTCTCTCTCGTCAAGGGGCGGGGAATTTAGAATTTAGCTTTCCTGCCC
TGTTTTCGTGATTTTGGACAAAAAACAGAACGTAGGCTGCAGAAGCTGGT
GGCACACGCCGGCTGGAGGCCACGTTTTGACCCTTCGAAATCTGCCCCCG
CCCCCAA back to topCoding sequence (CDS) from alignment at P-lacustris_contig103:78815..89921+ >mRNA_P-lacustris_contig103.346.1 ID=mRNA_P-lacustris_contig103.346.1|Name=mRNA_P-lacustris_contig103.346.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2418bp|location=Sequence derived from alignment at P-lacustris_contig103:78815..89921+ (Pleurocladia lacustris SAG_25_93) ATGGCCGGGCCTCCGCTGGTGCCTTCTTCCTCCAGCAACACCATCGCGAA CGTTCAGAAGGGCGATGAAATGGAAGATCAGCCATGTCCGAAGCGAAGGC GAAGATCGCTTGACAAGATGACCCCAGCAGCAGACGAGCCAACGCTAGAG GATGGCCGGGCCTCCGCTGGTGCCTTCTTCCTCCAGCAACACCATCGCGA ACGTTCAGAAGGGCGATGAAATGGAAGATCAGCCATGTCCGAAGCGAAGG CGAAGATCGCTTGACAAGATGACCCCAGCAGCAGACGAGCCAACGCTAGA GGAGGCACCTCAGGAGCAGCAGCTGGGCGAGATGGAAGACGTTGATGCTG ATGCTGATGCTGATGCTGATTCCGCGGCCCCAGAGGAGAGCGGAGGCGGG GACACCGGCGCGCCTGGCGATACCGACCCAGACGCCGCCGATCGCACGAC GGACACGCAATTAGTGCAGGAGGGCACGGACGCCAAGGGAGAGGAGGAGA ATGAAATCAATCATGGGCCAGAGCAAGAGCAGGAGGAAGAAGAGGACGAC GATCAAGAGCAGCCAGAGGAGGAAGAGGAGGAGGGAGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG CGCAGGAGGGTGTGGGGGAAGAGGGGATCGAGGCATCGCCAGCACATCGG GAGAAGCCCGAAGGGAGCAAGATAGCCAGGGCACGGTCGGCGTGGATGCT CTTCCTTGCTGATAACCGAGATAAGAGGCACCTCAGGAGCAGCAGCTGGG CGAGATGGAAGACGTTGATGCTGATGCTGATGCTGATGCTGATTCCGCGG CCCCAGAGGAGAGCGGAGGCGGGGACACCGGCGCGCCTGGCGATACCGAC CCAGACGCCGCCGATCGCACGACGGACACGCAATTAGTGCAGGAGGGCAC GGACGCCAAGGGAGAGGAGGAGAATGAAATCAATCATGGGCCAGAGCAAG AGCAGGAGGAAGAAGAGGACGACGATCAAGAGCAGCCAGAGGAGGAAGAG GAGGAGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGCGCAGGAGGGTGTGGGGGAAGAGGGGA TCGAGGCATCGCCAGCACATCGGGAGAAGCCCGAAGGGAGCAAGATAGCC AGGGCACGGTCGGCGTGGATGCTCTTCCTTGCTGATAACCGAGATAAGGT TCGCGCGGAACACCCAGGGCTTGCTGTCGGCCCAATGCAGAAAATTCTTA GCGAGATGTGGAAAATTCTTGGGGAGGAGGAGGTCGCACGATACGCCAAG GTTCGCGCGGAACACCCAGGGCTTGCTGTCGGCCCAATGCAGAAAATTCT TAGCGAGATGTGGAAAATTCTTGGGGAGGAGGAGGTCGCACGATACGCCA AGCTGGCGGCGGAAGACAAGGAACGGATGAAGAGCGAGCTCGCAGCGGCG GGGCTGACCAAGCTGCCCGCTAGGAAGAGCTGGCGGCGGAAGACAAGGAA CGGATGAAGAGCGAGCTCGCAGCGGCGGGGCTGACCAAGCTGCCCGCTAG GAAGAGCTCTTCCGAGGCCGTCGAGGGCGGTCCGACGAGCCTGGTGCTCC CTCTGGCAAGAGTTCGCAAGACCGTACGGCTCGACCCTTCCGTGGGGAAC ATCTCCAAGGAGGGTTTAATGTTATTGACGAAGGCGACCGAGGTTTTCAT GGCTAGCTTGGCGGACCACGCGTGGAAGATCGGGAGACAGCTCTTCCGAG GCCGTCGAGGGCGGTCCGACGAGCCTGGTGCTCCCTCTGGCAAGAGTTCG CAAGACCGTACGGCTCGACCCTTCCGTGGGGAACATCTCCAAGGAGGGTT TAATGTTATTGACGAAGGCGACCGAGGTTTTCATGGCTAGCTTGGCGGAC CACGCGTGGAAGATCGGGAGACAGACGGGGCGCAAGTCTGTGAGGCCTTG CGATGTTGCCGACTTCGTGTTCGCCGCCCCGGAGATGTACTGGCTGCGGG ACGAGTTTCGCGAAGAGCGCAGACGGGGCGCAAGTCTGTGAGGCCTTGCG ATGTTGCCGACTTCGTGTTCGCCGCCCCGGAGATGTACTGGCTGCGGGAC GAGTTTCGCGAAGAGCGCAGCTCCGTGAAGAAGAAGCAACACAAGCCCGA GGCGGGTGGCGCGAAGGCCGCGGGGGTGAAAAAGGCGGGCGTTGCCGCAC CCAAAAGGGGAAGGTCCATCACCTCGTTCTTCCAGAAAGCATAGCTCCGT GAAGAAGAAGCAACACAAGCCCGAGGCGGGTGGCGCGAAGGCCGCGGGGG TGAAAAAGGCGGGCGTTGCCGCACCCAAAAGGGGAAGGTCCATCACCTCG TTCTTCCAGAAAGCATAG back to top
|