mRNA_P-lacustris_contig1027.327.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1027.327.1
Unique NamemRNA_P-lacustris_contig1027.327.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1027.327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1027contigP-lacustris_contig1027:66840..67350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.8786955-UTR-P-lacustris_contig1027:66839..669421622815297.8786955-UTR-P-lacustris_contig1027:66839..66942Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1027 66840..66942 +
1693493459.1804104-UTR-P-lacustris_contig1027:66839..669421693493459.1804104-UTR-P-lacustris_contig1027:66839..66942Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1027 66840..66942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.8912218-CDS-P-lacustris_contig1027:66942..673501622815297.8912218-CDS-P-lacustris_contig1027:66942..67350Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1027 66943..67350 +
1693493459.1917272-CDS-P-lacustris_contig1027:66942..673501693493459.1917272-CDS-P-lacustris_contig1027:66942..67350Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1027 66943..67350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1027.327.1prot_P-lacustris_contig1027.327.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1027 66943..67350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1027.327.1

>prot_P-lacustris_contig1027.327.1 ID=prot_P-lacustris_contig1027.327.1|Name=mRNA_P-lacustris_contig1027.327.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=136bp
MSTVRVSCHGVTRGAYLDDTPQKSYALLCVMKTKKAGKNTRIHRVTTRSV
TSNAPFELHSSMHCRGRDRGRASAKSHFRVTKGSPFSASQKLSTPNTMIT
PRTSRPGDIYRLHPAGEGSPQNAQSQDQEGRNPVLH
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mRNA from alignment at P-lacustris_contig1027:66840..67350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1027.327.1 ID=mRNA_P-lacustris_contig1027.327.1|Name=mRNA_P-lacustris_contig1027.327.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=511bp|location=Sequence derived from alignment at P-lacustris_contig1027:66840..67350+ (Pleurocladia lacustris SAG_25_93)
GCCCAAAAGCACACACACACCAGCAAGCGAGGAACGGGGAAAAAAAGGAT
GAAAAGGAAAAGGGCGAGGATCGGCCCAAGGAACGGTGCAAGGAGCGGTG
CGGATGTCTACAGTGCGTGTGTCCTGCCATGGCGTCACGCGGGGCGCCTA
CTTGGACGACACGCCGCAAAAAAGCTACGCACTGCTGTGCGTGATGAAAA
CAAAAAAAGCAGGGAAAAACACGCGCATACATCGCGTGACGACGCGATCA
GTCACCTCTAACGCCCCTTTCGAACTTCACAGTTCCATGCACTGTAGAGG
GAGGGATAGAGGGAGAGCCAGCGCCAAATCACATTTTCGAGTGACAAAAG
GTTCACCCTTTTCCGCATCTCAGAAGCTCAGCACACCAAACACAATGATC
ACCCCTCGAACATCACGGCCAGGAGACATCTACCGCCTGCATCCCGCCGG
AGAAGGATCACCTCAAAACGCCCAAAGCCAGGACCAAGAAGGCCGTAATC
CCGTCCTCCAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1027:66840..67350+

>mRNA_P-lacustris_contig1027.327.1 ID=mRNA_P-lacustris_contig1027.327.1|Name=mRNA_P-lacustris_contig1027.327.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=816bp|location=Sequence derived from alignment at P-lacustris_contig1027:66840..67350+ (Pleurocladia lacustris SAG_25_93)
ATGTCTACAGTGCGTGTGTCCTGCCATGGCGTCACGCGGGGCGCCTACTT
GGACGACACGCCGCAAAAAAGCTACGCACTGCTGTGCGTGATGAAAACAA
AAAAAGCAGGGAAAAACACGCGCATACATCGCGTGACGACGCGATCAGTC
ACCTCTAACGCCCCTTTCGAACTTCACAGTTCCATGCACTGTAGAGGGAG
GGATAGAGGGAGAGCCAGCGCCAAATCACATTTTCGAGTGACAAAAGGTT
CACCCTTTTCCGCATCTCAGAAGCTCAGCACACCAAACACAATGATCACC
CCTCGAACATCACGGCCAGGAGACATCTACCGCCTGCATCCCGCCGGAGA
AGGATCACCTCAAAACGCCCAAAGCCAGGACCAAGAAGGCCGTAATCCCG
TCCTCCACATGTCTACAGTGCGTGTGTCCTGCCATGGCGTCACGCGGGGC
GCCTACTTGGACGACACGCCGCAAAAAAGCTACGCACTGCTGTGCGTGAT
GAAAACAAAAAAAGCAGGGAAAAACACGCGCATACATCGCGTGACGACGC
GATCAGTCACCTCTAACGCCCCTTTCGAACTTCACAGTTCCATGCACTGT
AGAGGGAGGGATAGAGGGAGAGCCAGCGCCAAATCACATTTTCGAGTGAC
AAAAGGTTCACCCTTTTCCGCATCTCAGAAGCTCAGCACACCAAACACAA
TGATCACCCCTCGAACATCACGGCCAGGAGACATCTACCGCCTGCATCCC
GCCGGAGAAGGATCACCTCAAAACGCCCAAAGCCAGGACCAAGAAGGCCG
TAATCCCGTCCTCCAC
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