Homology
BLAST of mRNA_P-lacustris_contig1025.317.1 vs. uniprot
Match: A0A6H5KJG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE) HSP 1 Score: 232 bits (592), Expect = 1.270e-67 Identity = 149/226 (65.93%), Postives = 166/226 (73.45%), Query Frame = 1 Query: 4 VLGAPVTSRSN----GSGSSSPYDAWFQELLRSGCVAGLALLDPVQGRPLYENRVDERLPHPXXXXXXXXXXXXXXG----------RSKYGEEAIG--GGGGRDYRRYGLVSPSEGRQLVAAVKCLADDGDDHGSLYCK--HEQPLTCMGTPFRVFGGTPLGIYAVGPRRRVGLIVRALPRVGVLVVVYRRPHLPQQVVGEVEKFVDNFWAGVQDFGLR--LPPP 621
+LGAP+TS GSGS+S YDA FQ L+ SGC+AGLALLD +GRPLYENR+D+RLP P XXXXXXXXXXXXX G+E +G GGG +R GLVS SEG++LVAAVK L DD D C+ EQPLTCMG PFRVFGGTPLGIYAVGP RRVGL+VRALPRVG LVVVYRRPHLPQQVVGEVEKFVD+FWAG Q +R LPPP
Sbjct: 65 MLGAPLTSGGXXXXAGSGSAS-YDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPPXXXXXXXXXXXXXXXXXXXXXXEDNKNDGKEVVGARGGGEGPGQRDGLVSSSEGQRLVAAVKSLTDDDD----AICRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLVVRALPRVGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQGRAVRSPLPPP 285
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-16_002620.1 |
| Exons | 3 |
| Model size | 2000 |
| Cds size | 231 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815297.124298-UTR-P-lacustris_contig1025:20453..21826 | 1622815297.124298-UTR-P-lacustris_contig1025:20453..21826 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1025 20454..21826 - |
| 1693493458.5888455-UTR-P-lacustris_contig1025:20453..21826 | 1693493458.5888455-UTR-P-lacustris_contig1025:20453..21826 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1025 20454..21826 - |
| 1622815297.1563878-UTR-P-lacustris_contig1025:22297..22378 | 1622815297.1563878-UTR-P-lacustris_contig1025:22297..22378 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1025 22298..22378 - |
| 1693493458.6183937-UTR-P-lacustris_contig1025:22297..22378 | 1693493458.6183937-UTR-P-lacustris_contig1025:22297..22378 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1025 22298..22378 - |
| 1622815297.164837-UTR-P-lacustris_contig1025:22799..23114 | 1622815297.164837-UTR-P-lacustris_contig1025:22799..23114 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1025 22800..23114 - |
| 1693493458.6318269-UTR-P-lacustris_contig1025:22799..23114 | 1693493458.6318269-UTR-P-lacustris_contig1025:22799..23114 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1025 22800..23114 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815297.1391168-CDS-P-lacustris_contig1025:21826..21932 | 1622815297.1391168-CDS-P-lacustris_contig1025:21826..21932 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1025 21827..21932 - |
| 1693493458.6020126-CDS-P-lacustris_contig1025:21826..21932 | 1693493458.6020126-CDS-P-lacustris_contig1025:21826..21932 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1025 21827..21932 - |
| 1622815297.148-CDS-P-lacustris_contig1025:22172..22297 | 1622815297.148-CDS-P-lacustris_contig1025:22172..22297 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1025 22173..22297 - |
| 1693493458.6102316-CDS-P-lacustris_contig1025:22172..22297 | 1693493458.6102316-CDS-P-lacustris_contig1025:22172..22297 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1025 22173..22297 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1025.317.1 >prot_P-lacustris_contig1025.317.1 ID=prot_P-lacustris_contig1025.317.1|Name=mRNA_P-lacustris_contig1025.317.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=77bp
MGTPFRVFGGTPLGIYAVGPRRRVGLIVRALPRVGVLVVVYRRPHLPQQV
VGEVEKFVDNFWAGVQDFGLRLPPPS* back to topmRNA from alignment at P-lacustris_contig1025:20454..23114- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1025.317.1 ID=mRNA_P-lacustris_contig1025.317.1|Name=mRNA_P-lacustris_contig1025.317.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2661bp|location=Sequence derived from alignment at P-lacustris_contig1025:20454..23114- (Pleurocladia lacustris SAG_25_93)
CAGGTACTCGGTGCTCCGGTAACCAGCAGAAGCAACGGCAGCGGCAGCAG
CAGCCCGTACGATGCGTGGTTTCAGGAGCTTCTCCGCAGCGGCTGCGTCG
CGGGGCTGGCCCTTCTGGATCCCGTGCAAGGGCGCCCACTGTACGAGAAT
CGCGTTGACGAGCGGTTGCCCCACCCTCCTCCTCCCCCCCCCCACCCCGC
CGCCGCAGCTGCCGCAACAGGAAGGAGCAAGTACGGCGAGGAAGCAATAG
GAGGGGGAGGAGGAAGAGACTATCGCCGCTACGGCTTAGTTTCTCCTTCT
GAAGGACGGCAGTTGGTGAGTGCGTCGATCACAGAGTCCGTCGTTCGTGG
GGTTGGTTTGGGCTGTGAGTACAACAGGCACTCTATTGCTGATGTTGCCT
TTTCTTGTTGACCCAACAGGCCAATCATGTTAGGCTATAAGCTGCCTTGG
GCTTGCCGCGGAGTGGATCGCGTGTCTTCTCGGGGAATGGTAGCACGAGG
AAGCGTTTTCTTCAGGGGGGAGAGAGAAAAGAAGGAGAGAGAGAGAAAAG
AAGGAGAGAGAAGAAGCTGACTTGAAACAAGTGAACTAGCTGTCTTTTTG
CCTTCAGGAGGTACTGGATGACAACTAACTACCTTGTTGGCTTCAGGAGT
ACTGGATGACAAGCAAAGGAAAGAACGAGTCACTGCGAAGACGACGACGT
AATTAACACACCACCACGACATCAACATAACGCAAGGTGGCCGCCGTGAA
ATGCTTGGCCGACGACGGTGACGACCACGGCAGCCTCTACTGCAAACACG
AACAACCCCTGACGTGCATGGGGACTCCGTTCCGAGTCTTCGGCGGGACG
CCGCTCGGAATCTACGCGGTGGGCCCCCGGAGACGGGTCGGCTTGATCGT
GCGAGCTCTCCCTCGCGTGGGCGTCCTGGTGGTGGTCTACAGGTACAACC
GAGCAGGGATTGCATTTACAAAGTAGATTGATCCAGACTGGTTTTACAGT
AGAGGAGCTCTGCGTGTACTCATGCAGGGCTGCGGGGTCTATATGGCATC
AGAAGTATTGCTCGTTGTGTTCGTCCATGCGTCGCAACGAGAAACCCTCG
CCTCTCCTAATTCTTGCACTCCATCTGGTCGTCTGGACGCGTGTGTACGT
GTTGTGTGCGTGTGTGCATGTGTTGGCGACAGACGGCCGCACCTTCCGCA
GCAGGTGGTGGGAGAGGTGGAGAAATTCGTGGATAACTTCTGGGCGGGCG
TCCAAGACTTTGGGCTTCGATTGCCGCCACCATCATGAATCATCATCATC
ATCATCATCATCAATGGCAGGAACGACTGCTGGCTCGTTCACGCCTACTG
CCATTTTCCACAGAAAGCAGCGGAAAGAAAACCGGAGGGGCGCGGCAGCG
GGCAGCGAGCAGCAGTTTTGATTCAAGTCATTTGCCCGTCACGAAGTGTT
GTTGTCAAGGAAATCGTGCCCACTCGTCGTCCTGAAGCTCGCGCAAGGAG
CTTGTTGTGGTCGTCGTTTTTTACAGGCGATCCTCATTCGAATGCGCGAG
CGAGCCGCGCGTCTCAAAATGAACGTTGATATCCGCTCCAGGCTTGTTGT
TGGTTGGGTTCCTGTGCAAGGTGACAAAGATGCATGCATGCATACATTCA
TTCATTCAAGACTCTGTTGCTGCTATTTTTTAGGGTGGTTTTGCTTTTTT
CGCAAACGGAGCCCCTCTGGCTCCGGGGCGGCGTTGTTTGTACATGTGCG
CGTCAAATATGGTGTCGGGTATCCACAAAACCACTAGACTCTCTGGCGGT
TCGAGGAAAAAACTTTAGCTGCTGCTACACTGCAAGGTGCTGGGACTCAG
AGAAAAAGTCTTTAGAGAGAGATAAAAACAGGAGGATAGCCTCATGTAGG
GAGCACGCCCGTATGTATGCCTACCGAATGACACACGCACGCTTGGCAGG
GCCCAAGGTACGAGGCACCGGTTTCCTTGTCGGCATGAATTCGTTGGTTG
GCTACAAATGGGAAGCGTAACGGTACACTGAGGGAGCTACATGCGGACAA
GAGACCATACATACCCATATGCATGTGCATGGAATAGCCCAAAGGGACCA
CCACGCACCTTGGGAAGTGGAAAAACAAGTGCAACAGTATATTGTATGGA
GGGCTACTGTATCGTCCCTTCCGGAAAACGAGGAGAGCTGCGGAGTCGGC
ATGATGGACGAATTTGACGAATAAGTTCGACTGCTGTCAGAGGGTTTCGA
GGGTACCAACCGCGGCGACCCGCTACTTGCGAGGGAGTTGAGTGTCGAGT
TCTGATAGAAAGCAAAAAAGAAGAGGTGTGTGTGCCTGGGTGCCCGAGAA
AATCGATGTGACACCGCATGGTGGCACGCCATGCATGTGCCACCATACGA
TGTCAAGGAAAGCAGCTAGATTGAAACAAAGGACACATATGTCCTAATAC
TTGGATAAGCCAAAACTTGGGGGGGGCTTATAGGTTTTAGTGTGGCCGCA
CTACATTTTTGTATTCAGACTTTGGGTCATCTATTATACAAGGAGTAGGT
TTTAGAAGGGACATGCCAAATCCGATACACTAAATATCATATAGGTTTTA
GAATAGCCATACTCAATCCTATACAAATGCCAAACCTGGGTAAGCCCAGC
GAAGGCAATGA back to topCoding sequence (CDS) from alignment at P-lacustris_contig1025:20454..23114- >mRNA_P-lacustris_contig1025.317.1 ID=mRNA_P-lacustris_contig1025.317.1|Name=mRNA_P-lacustris_contig1025.317.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=462bp|location=Sequence derived from alignment at P-lacustris_contig1025:20454..23114- (Pleurocladia lacustris SAG_25_93)
ATGGGGACTCCGTTCCGAGTCTTCGGCGGGACGCCGCTCGGAATCTACGC
GGTGGGCCCCCGGAGACGGGTCGGCTTGATCGTGCGAGCTCTCCCTCGCG
TGGGCGTCCTGGTGGTGGTCTACAGATGGGGACTCCGTTCCGAGTCTTCG
GCGGGACGCCGCTCGGAATCTACGCGGTGGGCCCCCGGAGACGGGTCGGC
TTGATCGTGCGAGCTCTCCCTCGCGTGGGCGTCCTGGTGGTGGTCTACAG
ACGGCCGCACCTTCCGCAGCAGGTGGTGGGAGAGGTGGAGAAATTCGTGG
ATAACTTCTGGGCGGGCGTCCAAGACTTTGGGCTTCGATTGCCGCCACCA
TCATGAACGGCCGCACCTTCCGCAGCAGGTGGTGGGAGAGGTGGAGAAAT
TCGTGGATAACTTCTGGGCGGGCGTCCAAGACTTTGGGCTTCGATTGCCG
CCACCATCATGA back to top
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