mRNA_P-lacustris_contig1025.317.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-lacustris_contig1025.317.1
Unique Name	mRNA_P-lacustris_contig1025.317.1
Type	mRNA
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig1025.317.1	prot_P-lacustris_contig1025.317.1	Pleurocladia lacustris SAG_25_93	polypeptide	P-lacustris_contig1025 21827..22297 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815297.124298-UTR-P-lacustris_contig1025:20453..21826	1622815297.124298-UTR-P-lacustris_contig1025:20453..21826	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 20454..21826 -
1693493458.5888455-UTR-P-lacustris_contig1025:20453..21826	1693493458.5888455-UTR-P-lacustris_contig1025:20453..21826	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 20454..21826 -
1622815297.1563878-UTR-P-lacustris_contig1025:22297..22378	1622815297.1563878-UTR-P-lacustris_contig1025:22297..22378	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 22298..22378 -
1693493458.6183937-UTR-P-lacustris_contig1025:22297..22378	1693493458.6183937-UTR-P-lacustris_contig1025:22297..22378	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 22298..22378 -
1622815297.164837-UTR-P-lacustris_contig1025:22799..23114	1622815297.164837-UTR-P-lacustris_contig1025:22799..23114	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 22800..23114 -
1693493458.6318269-UTR-P-lacustris_contig1025:22799..23114	1693493458.6318269-UTR-P-lacustris_contig1025:22799..23114	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1025 22800..23114 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815297.1391168-CDS-P-lacustris_contig1025:21826..21932	1622815297.1391168-CDS-P-lacustris_contig1025:21826..21932	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1025 21827..21932 -
1693493458.6020126-CDS-P-lacustris_contig1025:21826..21932	1693493458.6020126-CDS-P-lacustris_contig1025:21826..21932	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1025 21827..21932 -
1622815297.148-CDS-P-lacustris_contig1025:22172..22297	1622815297.148-CDS-P-lacustris_contig1025:22172..22297	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1025 22173..22297 -
1693493458.6102316-CDS-P-lacustris_contig1025:22172..22297	1693493458.6102316-CDS-P-lacustris_contig1025:22172..22297	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1025 22173..22297 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-lacustris_contig1025:20454..23114-
coding sequence from alignment at P-lacustris_contig1025:20454..23114-

protein sequence of mRNA_P-lacustris_contig1025.317.1

>prot_P-lacustris_contig1025.317.1 ID=prot_P-lacustris_contig1025.317.1|Name=mRNA_P-lacustris_contig1025.317.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=77bp
MGTPFRVFGGTPLGIYAVGPRRRVGLIVRALPRVGVLVVVYRRPHLPQQV
VGEVEKFVDNFWAGVQDFGLRLPPPS*

mRNA from alignment at P-lacustris_contig1025:20454..23114-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-lacustris_contig1025.317.1 ID=mRNA_P-lacustris_contig1025.317.1|Name=mRNA_P-lacustris_contig1025.317.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2661bp|location=Sequence derived from alignment at P-lacustris_contig1025:20454..23114- (Pleurocladia lacustris SAG_25_93)
CAGGTACTCGGTGCTCCGGTAACCAGCAGAAGCAACGGCAGCGGCAGCAG
CAGCCCGTACGATGCGTGGTTTCAGGAGCTTCTCCGCAGCGGCTGCGTCG
CGGGGCTGGCCCTTCTGGATCCCGTGCAAGGGCGCCCACTGTACGAGAAT
CGCGTTGACGAGCGGTTGCCCCACCCTCCTCCTCCCCCCCCCCACCCCGC
CGCCGCAGCTGCCGCAACAGGAAGGAGCAAGTACGGCGAGGAAGCAATAG
GAGGGGGAGGAGGAAGAGACTATCGCCGCTACGGCTTAGTTTCTCCTTCT
GAAGGACGGCAGTTGGTGAGTGCGTCGATCACAGAGTCCGTCGTTCGTGG
GGTTGGTTTGGGCTGTGAGTACAACAGGCACTCTATTGCTGATGTTGCCT
TTTCTTGTTGACCCAACAGGCCAATCATGTTAGGCTATAAGCTGCCTTGG
GCTTGCCGCGGAGTGGATCGCGTGTCTTCTCGGGGAATGGTAGCACGAGG
AAGCGTTTTCTTCAGGGGGGAGAGAGAAAAGAAGGAGAGAGAGAGAAAAG
AAGGAGAGAGAAGAAGCTGACTTGAAACAAGTGAACTAGCTGTCTTTTTG
CCTTCAGGAGGTACTGGATGACAACTAACTACCTTGTTGGCTTCAGGAGT
ACTGGATGACAAGCAAAGGAAAGAACGAGTCACTGCGAAGACGACGACGT
AATTAACACACCACCACGACATCAACATAACGCAAGGTGGCCGCCGTGAA
ATGCTTGGCCGACGACGGTGACGACCACGGCAGCCTCTACTGCAAACACG
AACAACCCCTGACGTGCATGGGGACTCCGTTCCGAGTCTTCGGCGGGACG
CCGCTCGGAATCTACGCGGTGGGCCCCCGGAGACGGGTCGGCTTGATCGT
GCGAGCTCTCCCTCGCGTGGGCGTCCTGGTGGTGGTCTACAGGTACAACC
GAGCAGGGATTGCATTTACAAAGTAGATTGATCCAGACTGGTTTTACAGT
AGAGGAGCTCTGCGTGTACTCATGCAGGGCTGCGGGGTCTATATGGCATC
AGAAGTATTGCTCGTTGTGTTCGTCCATGCGTCGCAACGAGAAACCCTCG
CCTCTCCTAATTCTTGCACTCCATCTGGTCGTCTGGACGCGTGTGTACGT
GTTGTGTGCGTGTGTGCATGTGTTGGCGACAGACGGCCGCACCTTCCGCA
GCAGGTGGTGGGAGAGGTGGAGAAATTCGTGGATAACTTCTGGGCGGGCG
TCCAAGACTTTGGGCTTCGATTGCCGCCACCATCATGAATCATCATCATC
ATCATCATCATCAATGGCAGGAACGACTGCTGGCTCGTTCACGCCTACTG
CCATTTTCCACAGAAAGCAGCGGAAAGAAAACCGGAGGGGCGCGGCAGCG
GGCAGCGAGCAGCAGTTTTGATTCAAGTCATTTGCCCGTCACGAAGTGTT
GTTGTCAAGGAAATCGTGCCCACTCGTCGTCCTGAAGCTCGCGCAAGGAG
CTTGTTGTGGTCGTCGTTTTTTACAGGCGATCCTCATTCGAATGCGCGAG
CGAGCCGCGCGTCTCAAAATGAACGTTGATATCCGCTCCAGGCTTGTTGT
TGGTTGGGTTCCTGTGCAAGGTGACAAAGATGCATGCATGCATACATTCA
TTCATTCAAGACTCTGTTGCTGCTATTTTTTAGGGTGGTTTTGCTTTTTT
CGCAAACGGAGCCCCTCTGGCTCCGGGGCGGCGTTGTTTGTACATGTGCG
CGTCAAATATGGTGTCGGGTATCCACAAAACCACTAGACTCTCTGGCGGT
TCGAGGAAAAAACTTTAGCTGCTGCTACACTGCAAGGTGCTGGGACTCAG
AGAAAAAGTCTTTAGAGAGAGATAAAAACAGGAGGATAGCCTCATGTAGG
GAGCACGCCCGTATGTATGCCTACCGAATGACACACGCACGCTTGGCAGG
GCCCAAGGTACGAGGCACCGGTTTCCTTGTCGGCATGAATTCGTTGGTTG
GCTACAAATGGGAAGCGTAACGGTACACTGAGGGAGCTACATGCGGACAA
GAGACCATACATACCCATATGCATGTGCATGGAATAGCCCAAAGGGACCA
CCACGCACCTTGGGAAGTGGAAAAACAAGTGCAACAGTATATTGTATGGA
GGGCTACTGTATCGTCCCTTCCGGAAAACGAGGAGAGCTGCGGAGTCGGC
ATGATGGACGAATTTGACGAATAAGTTCGACTGCTGTCAGAGGGTTTCGA
GGGTACCAACCGCGGCGACCCGCTACTTGCGAGGGAGTTGAGTGTCGAGT
TCTGATAGAAAGCAAAAAAGAAGAGGTGTGTGTGCCTGGGTGCCCGAGAA
AATCGATGTGACACCGCATGGTGGCACGCCATGCATGTGCCACCATACGA
TGTCAAGGAAAGCAGCTAGATTGAAACAAAGGACACATATGTCCTAATAC
TTGGATAAGCCAAAACTTGGGGGGGGCTTATAGGTTTTAGTGTGGCCGCA
CTACATTTTTGTATTCAGACTTTGGGTCATCTATTATACAAGGAGTAGGT
TTTAGAAGGGACATGCCAAATCCGATACACTAAATATCATATAGGTTTTA
GAATAGCCATACTCAATCCTATACAAATGCCAAACCTGGGTAAGCCCAGC
GAAGGCAATGA

Coding sequence (CDS) from alignment at P-lacustris_contig1025:20454..23114-

>mRNA_P-lacustris_contig1025.317.1 ID=mRNA_P-lacustris_contig1025.317.1|Name=mRNA_P-lacustris_contig1025.317.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=462bp|location=Sequence derived from alignment at P-lacustris_contig1025:20454..23114- (Pleurocladia lacustris SAG_25_93)
ATGGGGACTCCGTTCCGAGTCTTCGGCGGGACGCCGCTCGGAATCTACGC
GGTGGGCCCCCGGAGACGGGTCGGCTTGATCGTGCGAGCTCTCCCTCGCG
TGGGCGTCCTGGTGGTGGTCTACAGATGGGGACTCCGTTCCGAGTCTTCG
GCGGGACGCCGCTCGGAATCTACGCGGTGGGCCCCCGGAGACGGGTCGGC
TTGATCGTGCGAGCTCTCCCTCGCGTGGGCGTCCTGGTGGTGGTCTACAG
ACGGCCGCACCTTCCGCAGCAGGTGGTGGGAGAGGTGGAGAAATTCGTGG
ATAACTTCTGGGCGGGCGTCCAAGACTTTGGGCTTCGATTGCCGCCACCA
TCATGAACGGCCGCACCTTCCGCAGCAGGTGGTGGGAGAGGTGGAGAAAT
TCGTGGATAACTTCTGGGCGGGCGTCCAAGACTTTGGGCTTCGATTGCCG
CCACCATCATGA

mRNA_P-lacustris_contig1025.317.1 (mRNA) Pleurocladia lacustris SAG_25_93

ZOOM

x 1

POSITION

0