mRNA_P-lacustris_contig1024.311.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1024.311.1
Unique NamemRNA_P-lacustris_contig1024.311.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1024.311.1 vs. uniprot
Match: D7FKT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT1_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 5.960e-48
Identity = 113/184 (61.41%), Postives = 124/184 (67.39%), Query Frame = 3 
Query:   51 RGLIAGSSQTRLPASPQCERCLASAYFAPREGQHDERHDAWVNLRSDLDKVQMGVATPDQLRGTYAAANAPTGPXXXXXXXRGLADALPRPDSPRGDHSARPGRDGRAHKEVAMTDREENKVEGSVGRRSHSKTIRESRRGHGRDAATPSPPREGLHVSVHLPLKPDP-AEYDALPGGKIGRGG 599
            +GL+   S+ RL A       LAS YFAPR GQHDER DAWV LR DLDKVQMGVATPDQLRGT+AAANAPTGPXXXXXXXRGLADA     SPRG  S  P + GR  ++         K E   GRRSH+   RESRR  GR  ATPSPPREGLH+SV LPLKPDP   Y A+   + GR G
Sbjct:   31 QGLLKLDSRHRLSA----RDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRD--------RKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAG 202
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BLAST of mRNA_P-lacustris_contig1024.311.1 vs. uniprot
Match: D8LK48_ECTSI (Possible Cdc2-related protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK48_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.440e-43
Identity = 113/184 (61.41%), Postives = 124/184 (67.39%), Query Frame = 3 
Query:   51 RGLIAGSSQTRLPASPQCERCLASAYFAPREGQHDERHDAWVNLRSDLDKVQMGVATPDQLRGTYAAANAPTGPXXXXXXXRGLADALPRPDSPRGDHSARPGRDGRAHKEVAMTDREENKVEGSVGRRSHSKTIRESRRGHGRDAATPSPPREGLHVSVHLPLKPDP-AEYDALPGGKIGRGG 599
            +GL+   S+ RL A       LAS YFAPR GQHDER DAWV LR DLDKVQMGVATPDQLRGT+AAANAPTGPXXXXXXXRGLADA     SPRG  S  P + GR  ++         K E   GRRSH+   RESRR  GR  ATPSPPREGLH+SV LPLKPDP   Y A+   + GR G
Sbjct: 1644 QGLLKLDSRHRLSA----RDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRD--------RKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAG 1815
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1024.311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKT1_ECTSI5.960e-4861.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LK48_ECTSI1.440e-4361.41Possible Cdc2-related protein kinase n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1024contigP-lacustris_contig1024:8137..10334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog2880.D8LK48
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K00924,ko:K06101,ko:K11423,ko:K16675
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04391,map00310,map04391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.uterine gland development
EggNOG OGsCOG2940@1,KOG0594@1,KOG0594@2759,KOG1083@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_002420.1
EC2.1.1.43,2.3.1.225
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons2
Model size1909
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1024.311.1prot_P-lacustris_contig1024.311.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1024 9273..9839 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.4238284-UTR-P-lacustris_contig1024:8136..92721622815296.4238284-UTR-P-lacustris_contig1024:8136..9272Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 8137..9272 -
1693493458.0208354-UTR-P-lacustris_contig1024:8136..92721693493458.0208354-UTR-P-lacustris_contig1024:8136..9272Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 8137..9272 -
1622815296.443183-UTR-P-lacustris_contig1024:9839..98841622815296.443183-UTR-P-lacustris_contig1024:9839..9884Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 9840..9884 -
1693493458.0562668-UTR-P-lacustris_contig1024:9839..98841693493458.0562668-UTR-P-lacustris_contig1024:9839..9884Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 9840..9884 -
1622815296.4825127-UTR-P-lacustris_contig1024:10173..103341622815296.4825127-UTR-P-lacustris_contig1024:10173..10334Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 10174..10334 -
1693493458.065346-UTR-P-lacustris_contig1024:10173..103341693493458.065346-UTR-P-lacustris_contig1024:10173..10334Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 10174..10334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.433773-CDS-P-lacustris_contig1024:9272..98391622815296.433773-CDS-P-lacustris_contig1024:9272..9839Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1024 9273..9839 -
1693493458.044034-CDS-P-lacustris_contig1024:9272..98391693493458.044034-CDS-P-lacustris_contig1024:9272..9839Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1024 9273..9839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1024.311.1

>prot_P-lacustris_contig1024.311.1 ID=prot_P-lacustris_contig1024.311.1|Name=mRNA_P-lacustris_contig1024.311.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=189bp
MGVATPDQLRGTYAAANAPTGPPPPPPPPRGLADALPRPDSPRGDHSARP
GRDGRAHKEVAMTDREENKVEGSVGRRSHSKTIRESRRGHGRDAATPSPP
REGLHVSVHLPLKPDPAEYDALPGGKIGRGGGQTGHATGIASIAAAQPPG
AAEGEAQRTVGGRGRGKGTGTETGRGNENGGGGKGTGG*
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mRNA from alignment at P-lacustris_contig1024:8137..10334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1024.311.1 ID=mRNA_P-lacustris_contig1024.311.1|Name=mRNA_P-lacustris_contig1024.311.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2198bp|location=Sequence derived from alignment at P-lacustris_contig1024:8137..10334- (Pleurocladia lacustris SAG_25_93)
AAGGTTCTTGCGGCTGAGGGACACAAGGGCGTCCCCCTCGACCCCGCTCT
AGAGGACTTATTGCAGGGTCTTCTCAAACTCGACTCCCGGCATCGCCTCA
GTGCGAGAGATGCCTAGCCAGCGCGTACTTTGCACCCCGCGAGGGGCAGC
ATGATGAAAGGGTGAGCATATCAGCCATAGCCACTCACTGCCTTAGAATG
CGGTTATTTGGGTGTCATGCGGCATACCCCATGGGTGAGTTCTGCGAACC
ATGCATGCGTCGGGGGTTTCGTGTGACTGGCGGTATTGTTCGATTGTCTG
CCCTGTATCAGCACGCGTCTTGAGCGGAACGTCAAAACCTCGAAACACCA
TCGGCCTTGGAAATACCTTCTATCCCCACGGCCGCGGTCTCACGTCATGT
CTCGTGTCTATCCTTCCTACCTTCACTCTACATTTGGCATGGATATGCAG
CATGATGCATGGGTGAACCTGCGAAGTGATCTTGACAAGGTCCAGATGGG
AGTGGCTACACCGGATCAACTCCGCGGCACATATGCCGCCGCAAACGCGC
CGACGGGGCCTCCACCTCCGCCACCTCCACCTCGAGGTCTTGCTGATGCT
CTTCCCCGGCCGGATTCACCCAGAGGCGATCATTCAGCACGCCCAGGTCG
CGATGGCCGAGCACATAAAGAGGTCGCGATGACCGACCGCGAGGAAAACA
AGGTGGAGGGGAGCGTGGGCCGCCGTTCGCATAGCAAGACCATACGCGAA
AGCAGGCGCGGGCACGGGCGAGACGCCGCGACGCCTTCCCCGCCACGTGA
GGGCCTCCACGTTTCGGTACATCTACCCCTGAAGCCTGATCCAGCAGAAT
ATGACGCCTTGCCCGGAGGGAAGATCGGCCGGGGGGGGGGGCAAACCGGG
CACGCCACGGGGATCGCGTCAATAGCCGCAGCCCAACCGCCAGGGGCGGC
AGAAGGCGAAGCCCAGCGAACGGTAGGAGGGAGAGGGAGAGGGAAAGGGA
CAGGGACGGAGACAGGACGCGGGAACGAGAACGGAGGGGGAGGAAAAGGG
ACAGGGGGGTAACAAGGTCTCGCGAGCGCGAGTGGCACGGAAGTGAACGG
CTGGGCAAGGACCCGCGACGGGGAGATCGTTGACATTGTTGATGGTAACG
AGAGGTGTTAAAAAACACTCCAAGACGAAAGTGAGGGCAGGGCGTCTGGT
TCAGGCCCCGATTGTAAAATCGAAAACATAACCATGACGTGACGGGTGGG
GAGGTGTCTGAAGTGTATGATAAGGAATTCGGTCCGAGTCCAGGGAAGGA
AGGTGTAAGAAAAAACTTGGATTTCGAGGCGCCGAAAAAACAAAATTACG
TGGACAGAAGAAATTTTGTCCCGGTATATTATCTAGCACTACCGTAAACC
GCGAAAGTCTCGCGGCACTAAATGTCATAGTAAAATGGCCCCGTCCGAAG
CCCGGTCTCATACTCGCGATGCCCCCCCCGCCGCCAGTGAGTCGCGACAA
AGACGGTCTTATCCTGGAGCAGTAGCAACGTGGCGCACCTCACGACTACT
ACTACGAGACGGTAGCAGCACGATGGATGATAAATGGAGGACAAGACCGA
AGTATGCATTTGGTGTTTATTTTTTCCATACCGCTTCCTCGAAGGCGGCA
TAAGAAGTGACATACGACGAGCACAGCATAATTCAGCAGGTCCAACCTTT
TTCAGCGTTGAGTCGTGCTCGTGCTACTTGCGCCGCACCAAGCATATACC
CGCCACTATCTCACGTCGAGCGGTATTATTCTGGGCATCAGGGTCTAAGT
TAGACCCTGTGAACGGTTCCGTGAGGTACAAGTTCTACTCGTCTGGGCTT
TGGATTGGTGTTGGACTGAAGTAGGCGTCGGCGACGGAAAAAGAAGTTTC
TTGGCCTTTTTCCCATCCTTACGGGGTGTGCTAGCTATATCTTTCTCATA
TTTTTGCAGCCAACCGATGACAGAAGCCATGAGGAACGTGAAAGCAGCAG
CTCGGACGTCCTCCGAAGAAGCGCGCGTGCGTGCGAGGGGTTCAATGCTG
ATAGCAATTAGGGAAGATGACCCAGCCGTGAGGCGGGACTACTGTTCAAC
TGGCGTGTCTTGGGGTTTATCAACAGGGACTAAGAACTGGATCCAATGTT
GGGGGTCAGGATTCTGATGGTGGGATTTGCTGGCCCTGAAACCGTTAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1024:8137..10334-

>mRNA_P-lacustris_contig1024.311.1 ID=mRNA_P-lacustris_contig1024.311.1|Name=mRNA_P-lacustris_contig1024.311.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1134bp|location=Sequence derived from alignment at P-lacustris_contig1024:8137..10334- (Pleurocladia lacustris SAG_25_93)
ATGGGAGTGGCTACACCGGATCAACTCCGCGGCACATATGCCGCCGCAAA
CGCGCCGACGGGGCCTCCACCTCCGCCACCTCCACCTCGAGGTCTTGCTG
ATGCTCTTCCCCGGCCGGATTCACCCAGAGGCGATCATTCAGCACGCCCA
GGTCGCGATGGCCGAGCACATAAAGAGGTCGCGATGACCGACCGCGAGGA
AAACAAGGTGGAGGGGAGCGTGGGCCGCCGTTCGCATAGCAAGACCATAC
GCGAAAGCAGGCGCGGGCACGGGCGAGACGCCGCGACGCCTTCCCCGCCA
CGTGAGGGCCTCCACGTTTCGGTACATCTACCCCTGAAGCCTGATCCAGC
AGAATATGACGCCTTGCCCGGAGGGAAGATCGGCCGGGGGGGGGGGCAAA
CCGGGCACGCCACGGGGATCGCGTCAATAGCCGCAGCCCAACCGCCAGGG
GCGGCAGAAGGCGAAGCCCAGCGAACGGTAGGAGGGAGAGGGAGAGGGAA
AGGGACAGGGACGGAGACAGGACGCGGGAACGAGAACGGAGGGGGAGGAA
AAGGGACAGGGGGGTAAATGGGAGTGGCTACACCGGATCAACTCCGCGGC
ACATATGCCGCCGCAAACGCGCCGACGGGGCCTCCACCTCCGCCACCTCC
ACCTCGAGGTCTTGCTGATGCTCTTCCCCGGCCGGATTCACCCAGAGGCG
ATCATTCAGCACGCCCAGGTCGCGATGGCCGAGCACATAAAGAGGTCGCG
ATGACCGACCGCGAGGAAAACAAGGTGGAGGGGAGCGTGGGCCGCCGTTC
GCATAGCAAGACCATACGCGAAAGCAGGCGCGGGCACGGGCGAGACGCCG
CGACGCCTTCCCCGCCACGTGAGGGCCTCCACGTTTCGGTACATCTACCC
CTGAAGCCTGATCCAGCAGAATATGACGCCTTGCCCGGAGGGAAGATCGG
CCGGGGGGGGGGGCAAACCGGGCACGCCACGGGGATCGCGTCAATAGCCG
CAGCCCAACCGCCAGGGGCGGCAGAAGGCGAAGCCCAGCGAACGGTAGGA
GGGAGAGGGAGAGGGAAAGGGACAGGGACGGAGACAGGACGCGGGAACGA
GAACGGAGGGGGAGGAAAAGGGACAGGGGGGTAA
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