Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 389 |
| Cds size | 387 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815294.464762-CDS-P-lacustris_contig1023:53968..54355 | 1622815294.464762-CDS-P-lacustris_contig1023:53968..54355 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1023 53969..54355 + |
| 1693493457.3273563-CDS-P-lacustris_contig1023:53968..54355 | 1693493457.3273563-CDS-P-lacustris_contig1023:53968..54355 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1023 53969..54355 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1023.307.1 >prot_P-lacustris_contig1023.307.1 ID=prot_P-lacustris_contig1023.307.1|Name=mRNA_P-lacustris_contig1023.307.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=129bp
TAVVGGNGCPPKNYRQKLPSYGIPPKNTVIWHTAEKLPIYCYTAEKIPSY
GIPPKNYRHIAIPPKKYREKKQDRSLWEQNVVNKSSRFGRFVRQDFVSLF
MGTNVPNIWHPRFADDQKVAFSTNLGPRF back to topmRNA from alignment at P-lacustris_contig1023:53969..54357+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1023.307.1 ID=mRNA_P-lacustris_contig1023.307.1|Name=mRNA_P-lacustris_contig1023.307.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=389bp|location=Sequence derived from alignment at P-lacustris_contig1023:53969..54357+ (Pleurocladia lacustris SAG_25_93)
ACCGCCGTGGTGGGCGGTAACGGTTGTCCGCCGAAAAACTACCGTCAAAA
ACTACCGTCATATGGCATACCGCCTAAAAATACCGTCATATGGCATACCG
CCGAAAAATTACCGATATATTGCTATACCGCCGAAAAAATACCGTCCTAT
GGCATACCGCCGAAAAATTACCGTCATATTGCTATACCGCCGAAAAAATA
CCGTGAAAAAAAACAAGACCGGTCTTTATGGGAACAAAATGTTGTCAACA
AATCTTCAAGATTTGGAAGATTTGTCCGCCAAGATTTTGTTTCACTTTTT
ATGGGCACAAATGTTCCAAATATTTGGCACCCAAGATTTGCAGATGACCA
GAAAGTTGCCTTTTCTACAAATCTTGGGCCAAGATTTGT back to topCoding sequence (CDS) from alignment at P-lacustris_contig1023:53969..54357+ >mRNA_P-lacustris_contig1023.307.1 ID=mRNA_P-lacustris_contig1023.307.1|Name=mRNA_P-lacustris_contig1023.307.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=774bp|location=Sequence derived from alignment at P-lacustris_contig1023:53969..54357+ (Pleurocladia lacustris SAG_25_93)
ACCGCCGTGGTGGGCGGTAACGGTTGTCCGCCGAAAAACTACCGTCAAAA
ACTACCGTCATATGGCATACCGCCTAAAAATACCGTCATATGGCATACCG
CCGAAAAATTACCGATATATTGCTATACCGCCGAAAAAATACCGTCCTAT
GGCATACCGCCGAAAAATTACCGTCATATTGCTATACCGCCGAAAAAATA
CCGTGAAAAAAAACAAGACCGGTCTTTATGGGAACAAAATGTTGTCAACA
AATCTTCAAGATTTGGAAGATTTGTCCGCCAAGATTTTGTTTCACTTTTT
ATGGGCACAAATGTTCCAAATATTTGGCACCCAAGATTTGCAGATGACCA
GAAAGTTGCCTTTTCTACAAATCTTGGGCCAAGATTTACCGCCGTGGTGG
GCGGTAACGGTTGTCCGCCGAAAAACTACCGTCAAAAACTACCGTCATAT
GGCATACCGCCTAAAAATACCGTCATATGGCATACCGCCGAAAAATTACC
GATATATTGCTATACCGCCGAAAAAATACCGTCCTATGGCATACCGCCGA
AAAATTACCGTCATATTGCTATACCGCCGAAAAAATACCGTGAAAAAAAA
CAAGACCGGTCTTTATGGGAACAAAATGTTGTCAACAAATCTTCAAGATT
TGGAAGATTTGTCCGCCAAGATTTTGTTTCACTTTTTATGGGCACAAATG
TTCCAAATATTTGGCACCCAAGATTTGCAGATGACCAGAAAGTTGCCTTT
TCTACAAATCTTGGGCCAAGATTT back to top
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