Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 536 |
| Cds size | 384 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815294.4208746-UTR-P-lacustris_contig1023:46735..46887 | 1622815294.4208746-UTR-P-lacustris_contig1023:46735..46887 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1023 46736..46887 + |
| 1693493457.308737-UTR-P-lacustris_contig1023:46735..46887 | 1693493457.308737-UTR-P-lacustris_contig1023:46735..46887 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1023 46736..46887 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815294.4328358-CDS-P-lacustris_contig1023:46887..47271 | 1622815294.4328358-CDS-P-lacustris_contig1023:46887..47271 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1023 46888..47271 + |
| 1693493457.3178897-CDS-P-lacustris_contig1023:46887..47271 | 1693493457.3178897-CDS-P-lacustris_contig1023:46887..47271 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1023 46888..47271 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1023.306.1 >prot_P-lacustris_contig1023.306.1 ID=prot_P-lacustris_contig1023.306.1|Name=mRNA_P-lacustris_contig1023.306.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=128bp
MFCTSIHGHEECTAISLPCVCRRYDSRCCYQTGTAIGSRSLHGNVLHTFS
PQRMLRFRLPSVGTSIHFTSQIGSRCHFNVHFEVFNINHLQGTSQMAVFL
RCFDETPDGRKKKTCVMLCLIKFSLWQ* back to topmRNA from alignment at P-lacustris_contig1023:46736..47271+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1023.306.1 ID=mRNA_P-lacustris_contig1023.306.1|Name=mRNA_P-lacustris_contig1023.306.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=536bp|location=Sequence derived from alignment at P-lacustris_contig1023:46736..47271+ (Pleurocladia lacustris SAG_25_93)
GTCCTGAAGCACGCGGCCAGTGTCGGCGCTGAAGAACGCAACCAAAAGCC
AGAGTAAAACAAAAAAAAATGAGGGACGGGGGGGACGCGTGAAGTTAAGG
CACAGAGTCAAAACCAGTATTCAACAGAAAAGGAAAGCGTGTTGGCACGG
ACATGTTTTGTACTTCCATTCACGGACATGAAGAATGCACGGCCATAAGT
CTTCCTTGTGTTTGTCGCCGGTATGATTCTCGCTGTTGTTACCAAACAGG
CACTGCAATCGGTAGCAGATCTCTGCATGGAAATGTTTTACACACTTTTT
CACCTCAACGGATGTTGAGGTTCCGGCTGCCCAGCGTAGGGACTTCTATA
CATTTCACAAGTCAAATAGGGAGCAGGTGTCATTTTAACGTTCACTTTGA
AGTCTTCAACATAAACCACCTGCAGGGGACGTCTCAGATGGCAGTCTTCC
TTCGATGTTTTGACGAAACTCCTGACGGGCGGAAAAAAAAAACTTGCGTG
ATGCTGTGTCTTATTAAGTTTTCGTTGTGGCAATGA back to topCoding sequence (CDS) from alignment at P-lacustris_contig1023:46736..47271+ >mRNA_P-lacustris_contig1023.306.1 ID=mRNA_P-lacustris_contig1023.306.1|Name=mRNA_P-lacustris_contig1023.306.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=768bp|location=Sequence derived from alignment at P-lacustris_contig1023:46736..47271+ (Pleurocladia lacustris SAG_25_93)
ATGTTTTGTACTTCCATTCACGGACATGAAGAATGCACGGCCATAAGTCT
TCCTTGTGTTTGTCGCCGGTATGATTCTCGCTGTTGTTACCAAACAGGCA
CTGCAATCGGTAGCAGATCTCTGCATGGAAATGTTTTACACACTTTTTCA
CCTCAACGGATGTTGAGGTTCCGGCTGCCCAGCGTAGGGACTTCTATACA
TTTCACAAGTCAAATAGGGAGCAGGTGTCATTTTAACGTTCACTTTGAAG
TCTTCAACATAAACCACCTGCAGGGGACGTCTCAGATGGCAGTCTTCCTT
CGATGTTTTGACGAAACTCCTGACGGGCGGAAAAAAAAAACTTGCGTGAT
GCTGTGTCTTATTAAGTTTTCGTTGTGGCAATGAATGTTTTGTACTTCCA
TTCACGGACATGAAGAATGCACGGCCATAAGTCTTCCTTGTGTTTGTCGC
CGGTATGATTCTCGCTGTTGTTACCAAACAGGCACTGCAATCGGTAGCAG
ATCTCTGCATGGAAATGTTTTACACACTTTTTCACCTCAACGGATGTTGA
GGTTCCGGCTGCCCAGCGTAGGGACTTCTATACATTTCACAAGTCAAATA
GGGAGCAGGTGTCATTTTAACGTTCACTTTGAAGTCTTCAACATAAACCA
CCTGCAGGGGACGTCTCAGATGGCAGTCTTCCTTCGATGTTTTGACGAAA
CTCCTGACGGGCGGAAAAAAAAAACTTGCGTGATGCTGTGTCTTATTAAG
TTTTCGTTGTGGCAATGA back to top
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