mRNA_P-lacustris_contig1020.289.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1020.289.1
Unique NamemRNA_P-lacustris_contig1020.289.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1020.289.1 vs. uniprot
Match: D8LS79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS79_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.850e-43
Identity = 88/137 (64.23%), Postives = 105/137 (76.64%), Query Frame = 3 
Query:  714 KRARSSPLRITVLLLSHTAVTLRPRLASASTSLPSSSTSELCPDETAACYDSIFCWECVAQFEGSSDFCEERYPILTLDYGASAATADDDSCEAASALFCCSFDASGQDCLGDAVTLDYFQCGLLAGSGCALSILSC 1124
            K+AR++PLR  + LL   A  LRP LASAST+LPSSS  ELCPDETAACY+S  CW+CVAQFE SS++CE+R+P+L  +        DDD CEAASAL+CCSFDASGQDCL D VT+DYF+CG+L GSGC LS   C
Sbjct:   15 KKARATPLRFALPLLLLVADALRPHLASASTTLPSSS--ELCPDETAACYESTLCWDCVAQFEDSSEYCEDRFPVLAAE--------DDDGCEAASALYCCSFDASGQDCLDDTVTVDYFRCGVLEGSGCDLSDSPC 141
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BLAST of mRNA_P-lacustris_contig1020.289.1 vs. uniprot
Match: A0A6H5L2W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W4_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 7.260e-41
Identity = 92/166 (55.42%), Postives = 109/166 (65.66%), Query Frame = 3 
Query:  627 VAETRNKNPTMDTTTTGRAAAGASFFVGTKRARSSPLRITVLLLSHTAVTLRPRLASASTSLPSSSTSELCPDETAACYDSIFCWECVAQFEGSSDFCEERYPILTLDYGASAATADDDSCEAASALFCCSFDASGQDCLGDAVTLDYFQCGLLAGSGCALSILSC 1124
            V  TRNK             A A      K  R++PLR  + LL   A TLRP LASASTSLPSSS  ELCPDETAACY+S  CW+CVAQFE SS++CE+RYP+L  +        DDD CEAA+AL+CCSFDASG+DCL D VT+DYF+C ++  SGC LS   C
Sbjct:   16 VLVTRNKXXXXXXXXXXXXVAAAPTCPEIKNTRATPLRFALPLLLLVADTLRPHLASASTSLPSSS--ELCPDETAACYESTLCWDCVAQFEDSSEYCEDRYPVLAAE--------DDDGCEAATALYCCSFDASGEDCLDDTVTVDYFRCSVVEVSGCDLSDSPC 171
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BLAST of mRNA_P-lacustris_contig1020.289.1 vs. uniprot
Match: A0A6H5JEP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.610e-22
Identity = 68/127 (53.54%), Postives = 83/127 (65.35%), Query Frame = 3 
Query:  714 KRARSSPL--RITVLLLSHTAVTLRPRLASASTSLPSSSTSELCPDETAACYDSIFCWECVAQF-EGSSDFCEERYPILTLDYGASAATADDDSCEAASALFCCSFDASGQDCLGDAVTLDYFQCGL 1085
            KR  ++PL  R+  + L   A T+   +   STSLPSSS SE C +E AACYDS  CW+CVAQF E   D C ERYP ++ + GAS        C+ ASALFCCSF  SGQDCL DAVT+++FQCGL
Sbjct:    6 KRRAAAPLKARVASIFLVINASTILLHVGHGSTSLPSSS-SEACVEEAAACYDSALCWDCVAQFAEDGVDSCGERYPAMS-NSGAS-------DCDVASALFCCSFYVSGQDCLDDAVTMEFFQCGL 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1020.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS79_ECTSI1.850e-4364.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2W4_9PHAE7.260e-4155.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEP0_9PHAE1.610e-2253.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1020contigP-lacustris_contig1020:37647..39948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004510.2
Exons1
Model size2302
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1020.289.1prot_P-lacustris_contig1020.289.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1020 38303..39133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.372083-UTR-P-lacustris_contig1020:37646..383021622815292.372083-UTR-P-lacustris_contig1020:37646..38302Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1020 37647..38302 +
1693493455.529381-UTR-P-lacustris_contig1020:37646..383021693493455.529381-UTR-P-lacustris_contig1020:37646..38302Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1020 37647..38302 +
1622815292.3942347-UTR-P-lacustris_contig1020:39133..399481622815292.3942347-UTR-P-lacustris_contig1020:39133..39948Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1020 39134..39948 +
1693493455.5652974-UTR-P-lacustris_contig1020:39133..399481693493455.5652974-UTR-P-lacustris_contig1020:39133..39948Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1020 39134..39948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.3838024-CDS-P-lacustris_contig1020:38302..391331622815292.3838024-CDS-P-lacustris_contig1020:38302..39133Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 38303..39133 +
1693493455.5424566-CDS-P-lacustris_contig1020:38302..391331693493455.5424566-CDS-P-lacustris_contig1020:38302..39133Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 38303..39133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1020.289.1

>prot_P-lacustris_contig1020.289.1 ID=prot_P-lacustris_contig1020.289.1|Name=mRNA_P-lacustris_contig1020.289.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=277bp
MDTTTTGRAAAGASFFVGTKRARSSPLRITVLLLSHTAVTLRPRLASAST
SLPSSSTSELCPDETAACYDSIFCWECVAQFEGSSDFCEERYPILTLDYG
ASAATADDDSCEAASALFCCSFDASGQDCLGDAVTLDYFQCGLLAGSGCA
LSILSCSPTYSPDAGQATSAPGAAAVTGSPVTPSPTPPTLIDAAPTASPA
DEMAATTPSPDSIDDSSSGSDDDPRMSTPSPSGSDLDAGTGATSGTAGIF
AALPSYSSALFLWGAAFVVFMGRAGV*
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mRNA from alignment at P-lacustris_contig1020:37647..39948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1020.289.1 ID=mRNA_P-lacustris_contig1020.289.1|Name=mRNA_P-lacustris_contig1020.289.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2302bp|location=Sequence derived from alignment at P-lacustris_contig1020:37647..39948+ (Pleurocladia lacustris SAG_25_93)
TGCTGACATACTTTGTTTTTTCGGCTGAAAAAGCTTGCACGCATGCCGGC
ACCCACAGGACGCCAAAGCAATCAATTAAAAGCACAGGTGCTGCGAGCCC
TATTCAATAACGAATGGCAATAGCGAGTCCAACTGCCAGAGGGTGTCGAG
GCTATATACCAGCCGAACCTCTCGCTACGTGTGAGGGATTCAAATAGCAA
ATGAATTTTCTGACAGAAAAGGAAAGAAAAGTGTCAGCCTCGCGCGCGGC
AGGACTCTGTTCAGTTAGAGAGCGTCCTTGTCTATGTTTGACGCACCTTG
TTATATGCATGAGCACCACAAAACGCACCCGACGTCCATAGGGTGTAGTG
TTAAATGCTGGCGTTAACACCAGTGGCTGCGAAGGTAGGCCGTGCACTCC
TTAGGAAGCCTCCTCTCCAGCGGAAGCACATGAAGCGTTTCACGTACGTT
GATACTGTAGCAAGCCTCCTTGCTAAGCTCCCTGCATCCGCCGGCATATT
TCGTGCTTCTCCTTTACCTGTCCAAACCAAACCGACGCCCCCGAGTCCCG
GAGGGAAAAACTTTTCTTACCCCTTCATCCGGGCATTTTGCTCCCTCTTT
CTTCCCCTCCCTCTTAACACGTGTAGGTCGCTGAGACTAGGAACAAGAAC
CCCACCATGGATACCACCACCACAGGCAGGGCCGCCGCTGGCGCCTCATT
TTTCGTGGGGACCAAGAGAGCAAGATCATCCCCTCTCCGTATCACCGTCC
TCCTCCTTTCTCACACCGCTGTTACCTTGCGACCGCGCCTCGCGAGTGCG
TCGACCAGTCTCCCGTCTTCCTCAACCAGTGAGCTGTGCCCAGACGAGAC
TGCGGCGTGCTACGACTCGATCTTCTGCTGGGAGTGCGTGGCGCAGTTCG
AGGGCAGCTCTGACTTCTGCGAGGAGCGCTACCCGATCTTGACTTTGGAC
TACGGGGCTTCGGCGGCGACCGCTGACGACGACAGCTGCGAAGCCGCGTC
CGCCCTGTTTTGCTGCAGCTTTGACGCGAGCGGCCAAGACTGCCTTGGTG
ACGCAGTCACATTGGACTACTTTCAGTGCGGTCTTCTCGCGGGCAGCGGC
TGCGCTTTGTCCATCCTGTCTTGCTCACCCACCTACAGCCCCGACGCCGG
TCAAGCGACATCGGCGCCTGGTGCGGCTGCTGTGACGGGGTCTCCTGTGA
CCCCTTCGCCGACGCCCCCAACCCTAATCGACGCTGCACCGACGGCCTCT
CCCGCAGACGAGATGGCGGCAACAACACCGTCGCCTGATAGCATTGATGA
TTCATCGTCTGGTAGCGATGATGATCCACGGATGTCAACCCCATCTCCCA
GTGGTTCAGACCTTGACGCAGGGACAGGTGCTACCAGCGGGACTGCGGGG
ATTTTTGCGGCACTTCCTAGCTATTCGAGTGCGTTATTTCTGTGGGGTGC
GGCCTTCGTTGTATTCATGGGAAGAGCAGGCGTGTGACCAGTCAAGCGAT
GCAGACACGACCTTTCCCTGCTTTGTGCTTTTTGTTGCCCGGAGCTGGGC
AGCGTCTACAAATTAGAACGTCTTGGCAGGTGTACGATAGTTGTACAGTT
TATTTGGCGAAAAGGTATGGACTGATGTTGGGCAACGCATCCCGTTGACC
ATGCGGTGTCGGACACATCGCACTGTGTGGAAAATATTCCACGTGCTGGA
CTGAATTGGCTTGACACCACCCAAGGGTGGGCCGTGGTTTGCCCACTTGC
GGGGGATACAAGCCGGACATCGTGGACGCGAGGTTAGGGCGCGCGCAGCG
GGGAGGGGCGCGAAGGAGGAAGCGCCTGTGTCGATGTCGGCTTATGGTGC
CGGTGTGCAGCATTGATGGGAGCGTTTTATGTCGTCTTCTTATGCTGCTG
GTCGTCCCTTCTCGTCTGAAGAGATGGCATGCATCAGGGCTCGATATGGG
TTGCGGACGGAGCAACCGGGCTATCCCTTGCACTCTTGGGAGTTTTTGGA
AGCGAATTTCACAGAGTTCAACCATTGCCAAGCATAAGGTTTGCGATGTG
CAGATACCCACAGCAGACACCCAAGGCAGGAGGTCCAGCGGGTACGTTTA
ATTTATTCGGGTGTAGATTAAAGAATGCACAGAATGTTTCACATTTGCGT
GAGGGGGGCGTGTGTCCAGAGGATAGTGATGGTTCGGCGTTGAGAGGGCC
GCGCATCGGATAGCTACATATCGGTGCGGGGAAGCAGTCTTTAAGGCGTC
TGGCACACTACAGCGTGTATGTGCCGAATTGGGCGGAATTGATTTTATTT
CA
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Coding sequence (CDS) from alignment at P-lacustris_contig1020:37647..39948+

>mRNA_P-lacustris_contig1020.289.1 ID=mRNA_P-lacustris_contig1020.289.1|Name=mRNA_P-lacustris_contig1020.289.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1662bp|location=Sequence derived from alignment at P-lacustris_contig1020:37647..39948+ (Pleurocladia lacustris SAG_25_93)
ATGGATACCACCACCACAGGCAGGGCCGCCGCTGGCGCCTCATTTTTCGT
GGGGACCAAGAGAGCAAGATCATCCCCTCTCCGTATCACCGTCCTCCTCC
TTTCTCACACCGCTGTTACCTTGCGACCGCGCCTCGCGAGTGCGTCGACC
AGTCTCCCGTCTTCCTCAACCAGTGAGCTGTGCCCAGACGAGACTGCGGC
GTGCTACGACTCGATCTTCTGCTGGGAGTGCGTGGCGCAGTTCGAGGGCA
GCTCTGACTTCTGCGAGGAGCGCTACCCGATCTTGACTTTGGACTACGGG
GCTTCGGCGGCGACCGCTGACGACGACAGCTGCGAAGCCGCGTCCGCCCT
GTTTTGCTGCAGCTTTGACGCGAGCGGCCAAGACTGCCTTGGTGACGCAG
TCACATTGGACTACTTTCAGTGCGGTCTTCTCGCGGGCAGCGGCTGCGCT
TTGTCCATCCTGTCTTGCTCACCCACCTACAGCCCCGACGCCGGTCAAGC
GACATCGGCGCCTGGTGCGGCTGCTGTGACGGGGTCTCCTGTGACCCCTT
CGCCGACGCCCCCAACCCTAATCGACGCTGCACCGACGGCCTCTCCCGCA
GACGAGATGGCGGCAACAACACCGTCGCCTGATAGCATTGATGATTCATC
GTCTGGTAGCGATGATGATCCACGGATGTCAACCCCATCTCCCAGTGGTT
CAGACCTTGACGCAGGGACAGGTGCTACCAGCGGGACTGCGGGGATTTTT
GCGGCACTTCCTAGCTATTCGAGTGCGTTATTTCTGTGGGGTGCGGCCTT
CGTTGTATTCATGGGAAGAGCAGGCGTGTGAATGGATACCACCACCACAG
GCAGGGCCGCCGCTGGCGCCTCATTTTTCGTGGGGACCAAGAGAGCAAGA
TCATCCCCTCTCCGTATCACCGTCCTCCTCCTTTCTCACACCGCTGTTAC
CTTGCGACCGCGCCTCGCGAGTGCGTCGACCAGTCTCCCGTCTTCCTCAA
CCAGTGAGCTGTGCCCAGACGAGACTGCGGCGTGCTACGACTCGATCTTC
TGCTGGGAGTGCGTGGCGCAGTTCGAGGGCAGCTCTGACTTCTGCGAGGA
GCGCTACCCGATCTTGACTTTGGACTACGGGGCTTCGGCGGCGACCGCTG
ACGACGACAGCTGCGAAGCCGCGTCCGCCCTGTTTTGCTGCAGCTTTGAC
GCGAGCGGCCAAGACTGCCTTGGTGACGCAGTCACATTGGACTACTTTCA
GTGCGGTCTTCTCGCGGGCAGCGGCTGCGCTTTGTCCATCCTGTCTTGCT
CACCCACCTACAGCCCCGACGCCGGTCAAGCGACATCGGCGCCTGGTGCG
GCTGCTGTGACGGGGTCTCCTGTGACCCCTTCGCCGACGCCCCCAACCCT
AATCGACGCTGCACCGACGGCCTCTCCCGCAGACGAGATGGCGGCAACAA
CACCGTCGCCTGATAGCATTGATGATTCATCGTCTGGTAGCGATGATGAT
CCACGGATGTCAACCCCATCTCCCAGTGGTTCAGACCTTGACGCAGGGAC
AGGTGCTACCAGCGGGACTGCGGGGATTTTTGCGGCACTTCCTAGCTATT
CGAGTGCGTTATTTCTGTGGGGTGCGGCCTTCGTTGTATTCATGGGAAGA
GCAGGCGTGTGA
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