mRNA_P-lacustris_contig102.280.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: D7FY72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY72_ECTSI) HSP 1 Score: 432 bits (1111), Expect = 1.690e-131 Identity = 238/331 (71.90%), Postives = 257/331 (77.64%), Query Frame = 2 Query: 1817 GRQFSNVLMRCAGCVDRVRYDPCLPAGERVIRDTRKGSKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDSREFHAPVVTPLELEVALGKRDWDGFYSTDFDDLLGLRAQSSPKPSPPGGDHKEAATLQPTTAAGLASDAIDSLSLAESATTDGGXXXXXXXXXXXXXXXXQPFFSLVTGTYQNRPGVSRKRPEINHIGDDGGSGDGTEVGAAGGALVGVGDRSLVEWSSPAADYLGKRAFQGLEALVGQTEAKAAIEGQSGIASDYGGVTSAVLSDFPH 2809
GRQ SNVLMRCAGCVDR+RYDPCLP GERVI DTRKG+KDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRS+R MIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDSREFHAPVVTPLELEVAL KR+WDGFYSTDFDDLL L PP + AA+L PT +ASD I+SL++ +S+ T +PFFSLVTGTYQN+PGVSRK+ E +H G G + GALVGVGDRSLVEWSSPAAD+LGKR F+GLEALVGQTEAKAA GQSGIASDYGG L D P
Sbjct: 488 GRQLSNVLMRCAGCVDRMRYDPCLPPGERVIGDTRKGNKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSVRKMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDSREFHAPVVTPLELEVALRKREWDGFYSTDFDDLLELE--------PPASERSGAASLNPT----VASDGIESLAIGDSSPT-------RAAQSADDDEGDEPFFSLVTGTYQNKPGVSRKKAEGHHTG----------TGGSAGALVGVGDRSLVEWSSPAADFLGKREFKGLEALVGQTEAKAATPGQSGIASDYGGA----LGDRPQ 785
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: A0A7S3XP23_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP23_HETAK) HSP 1 Score: 221 bits (562), Expect = 6.200e-58 Identity = 145/326 (44.48%), Postives = 178/326 (54.60%), Query Frame = 2 Query: 1817 GRQFSNVLMRCAG--CVDRVRYDPCLPAGERVIRDTRKGSKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLL---DSREFHAPVVTPLELEVALGKRDWDGFYSTDFDDLLGLRAQSSPKPSPPGGDHKEAATLQPTTAAGLASDAIDSLSLAESATTDGGXXXXXXXXXXXXXXXXQPFFSLVTGTYQNRPGVSRKRPEINHIGDDGGSGDGTEVGAAGGALVGVGDRSLVEWSSPAADYLGKRAFQGLEALVGQTEAKAAIEGQSGIASDYGGV 2779
G Q S +LMRC+ C YDP + +T K ++ LMRR+YLVQRAREA ++G+VVGTLGV Y S VR LR+++E AGRKAYT AVGK+NVAKLANFAEV+VF LVAC SLL D+RE+ APVVTPLELEVALG R+W GFYS DF DL G R + GG +E P P FSLV+G+Y+ RPG + N D + + L+E+ SPA D+L R FQGLE +G+TE + A+ GQ GIASDYGGV
Sbjct: 317 GPQLSTLLMRCSKSKCFS---YDPQRDPNQEFREETGKSNRALMRRFYLVQRAREASIVGLVVGTLGVAGYLSQVRRLRALVEAAGRKAYTFAVGKLNVAKLANFAEVEVFVLVACPNASLLAEADAREYPAPVVTPLELEVALGVREW-GFYSADFHDLGGEREEQVENE---GGGERETEEKDPDA----------------------------------------PIFSLVSGSYRARPGFASVADRDNENVDS------------------IKGKELMEYRSPAGDFLQARQFQGLEQALGETEVRPAVPGQVGIASDYGGV 577
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: A0A836CDL8_9STRA (Putative diphthamide biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDL8_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.640e-47 Identity = 94/163 (57.67%), Postives = 116/163 (71.17%), Query Frame = 2 Query: 1817 GRQFSNVLMRCAGCVDRVRYDPCLPAGE--------RVIRDTRKGSKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDSREFHAPVVTPLELEVALGKRDWDGFYSTDFDDL 2281
GR+ SNVLMRCAG + R YDP P G R+ + ++DLMRRY+ +QRA+EA VIGIV +GV ++ SLR+ +EDAGRKAY AVG+VN AKL NFA V+ FCLVACAE+SLLD+ EF P+VTPLEL++ALG R+WDGFYSTD DL
Sbjct: 178 GRRLSNVLMRCAGYIGRWSYDPRQPGGSLDGKQRTGRLREEVAGANRDLMRRYHQIQRAKEASVIGIVGAGMGVAGSSDIMCSLRAAVEDAGRKAYAFAVGRVNAAKLGNFAGVEAFCLVACAESSLLDTHEFPVPIVTPLELQIALGLREWDGFYSTDISDL 340
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: A0A7S0KAS9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAS9_9STRA) HSP 1 Score: 187 bits (476), Expect = 5.370e-47 Identity = 126/331 (38.07%), Postives = 174/331 (52.57%), Query Frame = 2 Query: 1817 GRQFSNVLMRCAG---CVDRVRYDP-CLPAGERVIRDT----RKGSKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDSREFHAPVVTPLELEVALGKRDWDGFYSTDFDDLLGLRAQSSPKPSPPGGDHKEAATLQPTTAAGLASDAIDSLSLAESATTDGGXXXXXXXXXXXXXXXXQPFFSLVTGTYQNRPGVSRKRPE----INHIGDDGGSGDGTEVGAAGGALVGVGDRSLVEWSSPAADYLGKRAFQGLEALVGQTEAKAAIEGQSGIASDYG 2773
G+Q N+LMRC+G C Y+P C + D R+G L RRY+L Q+AR A VIGI+VG+L Y VV +R I+++GR +YT A+GK+NV KLANF E+D F LVACAENSLLDSR++H P++TP ELE+AL R+WDG+YS + D LGL + + GD K S +D +PFFS+VTG +++ SRK E I++ D G E + ++ ++S A+YL R +QGL+A +G+ A A++GQ GIASDYG
Sbjct: 267 GKQLENILMRCSGTYGCASCWAYEPRCDGQIGSLSNDAASLCRRG---LNRRYFLTQKARMASVIGIIVGSLANAHYTHVVSKIRRRIQESGRTSYTFAIGKINVHKLANFGEIDCFVLVACAENSLLDSRDYHVPIITPFELEIALETREWDGYYSLELSDYLGLEKGTDEE-----GDDKS----------------------CNSDDSD------------------KPFFSVVTGKFES----SRKNDEHFLSIDNKNDTEHESTGNE------------ENRIIAYNSKGAEYLKGREYQGLQAKIGEDVATPAVKGQMGIASDYG 533
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: A0A6G0XLT2_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLT2_9STRA) HSP 1 Score: 181 bits (458), Expect = 6.360e-45 Identity = 124/317 (39.12%), Postives = 166/317 (52.37%), Query Frame = 2 Query: 1826 FSNVLMRCAGCVDRVRYDPCLPAGERVIRDTRKGSKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDSREFHAPVVTPLELEVAL-GKRDWDGFYSTDFDDLLGLRAQSSPKPSPPGGDHKEAATLQPTTAAGLASDAIDSLSLAESATTDGGXXXXXXXXXXXXXXXXQPFFSLVTGTYQNRPGVSRKRPEINHIGDDGGSGDGTEVGAAGGALVG-VGDRSLVEWSSPAADYLGKRAFQGLEALVGQTEAKAAIEGQSGIASDY 2770
+NVL+R AG V ++P V ++ ++ L RRY+LVQ+A+EA +IGI++GTLGV Y VV++L+ +I +GRKAYT VGK+NV KL+NFAE+D FCLVACAEN+LLDS EF P+VTP EL +AL W Y DF ++L Q A+D + E +PFFSLVTG Y H+ DD DG E+ A+ ALV G+R L + S AAD+L +R +QGL+ VG+T AA++G SGIA Y
Sbjct: 249 LTNVLLR-AGETPCVSFNP---HSNTVREESSSVNRTLKRRYFLVQKAKEAQIIGILMGTLGVASYLDVVKTLQELIAKSGRKAYTFVVGKINVPKLSNFAEIDAFCLVACAENTLLDSSEFFKPIVTPFELMLALTDDSSWTSQYKADFREVLPSMHQ-----------------------------AVDEMEHDE-------------------YKRDEPFFSLVTGKYHQM-----------HVQDDS---DGDEIDASSSALVSREGNRQLATYKSEAADFLAQREYQGLDPRVGETAPHAAVQGSSGIARGY 499
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: K8YSW8_NANGC (Diphthamide biosynthesis (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSW8_NANGC) HSP 1 Score: 172 bits (435), Expect = 6.520e-45 Identity = 94/162 (58.02%), Postives = 117/162 (72.22%), Query Frame = 2 Query: 1820 RQFSNVLMRCAGCVDRVRYDPC---LPAGERVIRDTRKGSKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDS--REFHAPVVTPLELEVALGKRDWDGFYSTDFDDLLGL 2290
+Q N+++R C D + YDP LPA R+ + K S+ L RRYYLVQRAR+A V G+VVGTLGV RY SVV ++R +I AG+KAYTL +GK+N AKLANFAE++ F LVAC E SLL+ R FHAPVVTPLE+E+ALG + WDG YSTDF +L L
Sbjct: 14 KQLVNIMLRFNAC-DCLVYDPASPPLPAPPRLREVSVKTSQALKRRYYLVQRARDASVFGVVVGTLGVGRYMSVVAAVRRLIARAGKKAYTLLIGKLNAAKLANFAEIETFVLVACPEASLLEDGGRAFHAPVVTPLEMEMALGGKSWDGSYSTDFRELESL 174
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: W7TR02_9STRA (Diphthamide biosynthesis n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR02_9STRA) HSP 1 Score: 181 bits (459), Expect = 1.030e-44 Identity = 140/344 (40.70%), Postives = 182/344 (52.91%), Query Frame = 2 Query: 1820 RQFSNVLMRCAGCVDRVRYDPC---LPAGERVIRDTRKGSKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDS--REFHAPVVTPLELEVALGKRDWDGFYSTDFDDLLGLRAQSSPKPSPPGGDHKEAATLQPTTAAGLASDAIDSLSLAESATTDGGXXXXXXXXXXXXXXXXQPFFSLVTGTYQNRPGVSRKRPEINHIGDDGGSGDGTEVGAAGGALVGVGDRSLVEWSSPAADYLGKRAFQGL-----EALVGQTEA--------------KAAIEGQSGIASDYGGV 2779
+Q N+++R C D + YDP LPA R+ + K S+ L RRYYLVQRAR+A V G+VVGTLGV RY SVV ++R +I AG+KAYTL +GK+N AKLANFAE++ F LVAC E SLL+ R FHAPVVTPLE+E+ALG + WDG YSTDF +L L QS G KE GL +D + + A + +DG +P+FSLV+G Y+ G G A G L G +L ++SSPA D+L R ++GL + V +TE +EG+ GIASDY V
Sbjct: 259 KQLVNIMLRFNAC-DCLVYDPASPPLPAPPRLREVSVKTSQALKRRYYLVQRARDASVFGVVVGTLGVGRYMSVVAAVRRLIARAGKKAYTLLIGKLNAAKLANFAEIETFVLVACPEASLLEDGGRAFHAPVVTPLEMEMALGGKSWDGSYSTDFRELESL-CQS--------GAQKER---------GLDTDLRKNGNCA-NCESDG---------------EDEPYFSLVSGGYKGGVG-----------------------GKAKGTLPLEGSTALTKFSSPAGDFLQLREYRGLGHDKHKNAVCETETGDRAEDREGGAKPPAGIVEGRRGIASDYDNV 544
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: W4GZY1_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZY1_9STRA) HSP 1 Score: 170 bits (430), Expect = 4.710e-41 Identity = 121/318 (38.05%), Postives = 161/318 (50.63%), Query Frame = 2 Query: 1826 FSNVLMRCAGCVDRVRYDPCLPAGERVIRDTRKGSKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDSREFHAPVVTPLELEVAL--GKRDWDGFYSTDFDDLLGLRAQSSPKPSPPGGDHKEAATLQPTTAAGLASDAIDSLSLAESATTDGGXXXXXXXXXXXXXXXXQPFFSLVTGTYQNRPGVSRKRPEINHIGDDGGSGDGTEVGAAGGALVG-VGDRSLVEWSSPAADYLGKRAFQGLEALVGQTEAKAAIEGQSGIASDY 2770
+N+L+R AG + YDP R + ++ L RRY+LVQ+A+EA +IGI++GTLGV VV+SL+++I +GRK+YT VGK+NV KL+NFAE+D FCLVACAENSLLDS EF P+VTP EL +AL G +W G Y DF ++L SL A + D G +P+FSLVTG Y G GGS D G ALV G + L + S A ++L R ++GL+ VG+T AA++G SGIA Y
Sbjct: 272 LTNILLR-AGDTPCLSYDPQTDVARR---EGTSINRTLNRRYFLVQKAKEAQIIGILMGTLGVANCLDVVQSLQALIAKSGRKSYTFVVGKINVPKLSNFAEIDAFCLVACAENSLLDSTEFFKPIVTPYELHLALTHGDSEWTGQYKADFQEVL------------------------------------PSLVTAVNEMDDEGEAPD------------EPYFSLVTGKYHQAKGQRD---------GGGGSDDSDHDGDNCTALVSKAGTQQLTTFRSEAGEFLATRDYRGLDPRVGETAPHAAVQGSSGIARGY 528
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: H3GMD4_PHYRM (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMD4_PHYRM) HSP 1 Score: 169 bits (428), Expect = 6.600e-41 Identity = 116/322 (36.02%), Postives = 169/322 (52.48%), Query Frame = 2 Query: 1826 FSNVLMRCAGCVDRVRYDPCLPAGERVIRDTRKG----SKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDSREFHAPVVTPLELEVALGK-RDWDGFYSTDFDDLLGLRAQSSPKPSPPGGDHKEAATLQPTTAAGLASDAIDSLSLAESATTDGGXXXXXXXXXXXXXXXXQPFFSLVTGTYQ--NRPGVSRKRPEINHIGDDGGSGDGTEVGAAGGALVGVGDRSLVEWSSPAADYLGKRAFQGLEALVGQTEAKAAIEGQSGIASDY 2770
+++LMR + VD Y+P + + TRK ++ LMRR+YLVQ+A+EA + GI++GTLGV RY VV L+ +I+ +GRK+Y VGKVNV KLAN+AE+D F LVAC +N+L+DS+EF+ P+VTP EL++AL +WDG Y TDF +++ Q++ GD ++A +PFFSLV+GTY+ +R S + + E+ A+ V L + S AADYL R +QGL+ +G+T A A+EG +GIA Y
Sbjct: 249 LTSILMRYS-TVDCFSYNPEMMS-------TRKEGATVNRALMRRFYLVQQAKEAQIFGILMGTLGVNRYLDVVHGLQKLIKKSGRKSYLFVVGKVNVPKLANYAEIDAFVLVACQQNTLMDSKEFYKPIVTPYELQLALSPTEEWDGQYKTDFREVIPALEQTAQIVEQADGDDEDA---------------------------------------------DKPFFSLVSGTYKTSSRTTASDREATTYALAAS------EEIDASTALQVKNERTELTAYHSEAADYLAAREYQGLDPRIGKTPAHPAVEGSTGIARGY 511
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Match: A0A8K1C3Y9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3Y9_PYTOL) HSP 1 Score: 169 bits (427), Expect = 8.890e-41 Identity = 117/317 (36.91%), Postives = 177/317 (55.84%), Query Frame = 2 Query: 1826 FSNVLMRCAGCVDRVRYDPCLPAGERVIRDTRKGSKDLMRRYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSLRSMIEDAGRKAYTLAVGKVNVAKLANFAEVDVFCLVACAENSLLDSREFHAPVVTPLELEVALGKRD-WDGFYSTDFDDLLGLRAQSSPKPSPPGGDHKEAATLQPTTAAGLASDAIDSLSLAESATTDGGXXXXXXXXXXXXXXXXQPFFSLVTGTYQNRPGVSRKRPEINHIGDDGGSGDGTEVGAAGGALVGVGDRS-LVEWSSPAADYLGKRAFQGLEALVGQTEAKAAIEGQSGIASDY 2770
+++LMR + V+ V Y+P + + + ++ LMRR++LVQ+A+EA +IGI++GTLGV +Y VV L+ MI+ +GRK+Y VGKVNV KLAN+AE+D F LVAC +NSL+DS+E+ P++TP EL++AL + D W G + TDF ++L L +++ KE Q E D +PFFSLVTGTY++ G S R + D+ E G + AL +R+ L+++ S AA++L R ++GLE +G+T A AA++G +GIA Y
Sbjct: 251 LTSILMRYS-TVECVSYNPQMMEARK---EGATVNRALMRRFFLVQKAKEAQIIGILMGTLGVSKYMDVVHGLQRMIKQSGRKSYLFVVGKVNVPKLANYAEIDAFVLVACQQNSLMDSKEYFKPIITPFELQLALSESDEWTGQFKTDFGEVLPLLDETT----------KELERKQDG---------------EEDEDAD------------------KPFFSLVTGTYKSA-GHSVSRATDSTPADE-------EDGESTTALQVKNERTDLIQYRSEAAEFLAGREYRGLEPRLGETPAHAAVKGSTGIARGY 512 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig102.280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig102.280.1 >prot_P-lacustris_contig102.280.1 ID=prot_P-lacustris_contig102.280.1|Name=mRNA_P-lacustris_contig102.280.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=534bp MAASVKIEFDDGSRVISQTLEDTAGIVDSRIGRGGVLSGGKRSASCSIYEback to top mRNA from alignment at P-lacustris_contig102:207513..213234- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig102.280.1 ID=mRNA_P-lacustris_contig102.280.1|Name=mRNA_P-lacustris_contig102.280.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5722bp|location=Sequence derived from alignment at P-lacustris_contig102:207513..213234- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig102:207513..213234- >mRNA_P-lacustris_contig102.280.1 ID=mRNA_P-lacustris_contig102.280.1|Name=mRNA_P-lacustris_contig102.280.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3204bp|location=Sequence derived from alignment at P-lacustris_contig102:207513..213234- (Pleurocladia lacustris SAG_25_93)back to top |