mRNA_P-lacustris_contig102.273.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig102.273.1
Unique NamemRNA_P-lacustris_contig102.273.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: D7FY69_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY69_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 1.560e-136
Identity = 206/260 (79.23%), Postives = 224/260 (86.15%), Query Frame = 2
Query:  317 ELALFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPP-LFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            EL LFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLG   G        + SF+VSP ASL DLCTTH++GYVERY EGRFT+RENR VGFPWSEASVKRSLSSVGGTV   HA     GELRDR  GA + PP LFSGHIAGGTHHAF DRGEGFCVFSDIAVAANVALRDYPET+RQ+LIVDCDVHQGNGNAVLF+SKP V +FS+H +ANYFSEKE+SD+DIEVEEG+GD+EYL+LLSER P+LVD VRPDLIFYQ
Sbjct:    8 ELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRVNGIP------AVSFAVSPTASLDDLCTTHDKGYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCA-DGELRDRRPGARRTPPSLFSGHIAGGTHHAFSDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQGNGNAVLFKSKPEVSTFSIHCKANYFSEKEDSDVDIEVEEGAGDEEYLSLLSERLPSLVDHVRPDLIFYQ 260          
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A7S1IVC4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IVC4_9EUGL)

HSP 1 Score: 278 bits (711), Expect = 6.580e-87
Identity = 147/255 (57.65%), Postives = 177/255 (69.41%), Query Frame = 2
Query:  329 FYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            +YNDVY+V LP GHRFPMEKYR+VRE LQ  LL +G           A F VSP+A+  DLC  H+  YV RY  G FTD ENR VGFPWS  SV RSLSSVGGTV   H                GKA   F+ H+AGGTHHAF D GEGFC+FSDIAVAA VALRDYP+ ++++LIVD DVHQGNGNAVLF+++  VF+FS+H + NYFS+K+ SDLDIE+ +G  D EYLA+L      L D+V+PDL+F+Q
Sbjct:   25 YYNDVYKVPLPQGHRFPMEKYRMVRERLQC-LLPQG----------EALFEVSPLATTRDLCLVHDHTYVNRYRTGAFTDAENRKVGFPWSINSVNRSLSSVGGTVAATHMVCT------------GKA--FFAAHLAGGTHHAFRDHGEGFCIFSDIAVAATVALRDYPKIIKKILIVDLDVHQGNGNAVLFKNEDRVFTFSMHCKQNYFSQKQTSDLDIELPKGCTDQEYLAVLQMHLARLFDRVQPDLVFFQ 254          
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A7S4B912_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B912_CHRCT)

HSP 1 Score: 278 bits (710), Expect = 1.630e-86
Identity = 149/256 (58.20%), Postives = 178/256 (69.53%), Query Frame = 2
Query:  326 LFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            LFYND+Y V LP GHRFPM KYRLVR GLQ EL            S  A+F  SP+A+++DL T H+  YVERY+ G FT +ENR VGFPWS  SVKRSLSS GGTV   HA       + +R  GA    P F+GH+AGGTHHAF DRGEGFCVF+DIAVAA VALRDY E+V++VLIVD DVHQGNG A +F   P VF+FS+H   NYFS+K+ SD+D+EV+ G+ D EYL +L      L +QVRP L F+Q
Sbjct:   38 LFYNDLYEVPLPPGHRFPMAKYRLVRLGLQRELE----------PSNLATFLPSPLAAVSDLTTCHDATYVERYVTGTFTPQENRRVGFPWSIESVKRSLSSTGGTVAATHA-------VCNRTPGA----PRFAGHLAGGTHHAFADRGEGFCVFNDIAVAACVALRDYKESVQRVLIVDLDVHQGNGCAAIFADNPNVFTFSMHCAGNYFSKKQNSDIDVEVQPGATDAEYLEILHSHLGNLFEQVRPQLTFFQ 272          
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A7S4B9B1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B9B1_CHRCT)

HSP 1 Score: 278 bits (710), Expect = 1.970e-86
Identity = 149/256 (58.20%), Postives = 178/256 (69.53%), Query Frame = 2
Query:  326 LFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            LFYND+Y V LP GHRFPM KYRLVR GLQ EL            S  A+F  SP+A+++DL T H+  YVERY+ G FT +ENR VGFPWS  SVKRSLSS GGTV   HA       + +R  GA    P F+GH+AGGTHHAF DRGEGFCVF+DIAVAA VALRDY E+V++VLIVD DVHQGNG A +F   P VF+FS+H   NYFS+K+ SD+D+EV+ G+ D EYL +L      L +QVRP L F+Q
Sbjct:   38 LFYNDLYEVPLPPGHRFPMAKYRLVRLGLQRELE----------PSNLATFLPSPLAAVSDLTTCHDATYVERYVTGTFTPQENRRVGFPWSIESVKRSLSSTGGTVAATHA-------VCNRTPGA----PRFAGHLAGGTHHAFADRGEGFCVFNDIAVAACVALRDYKESVQRVLIVDLDVHQGNGCAAIFADNPNVFTFSMHCAGNYFSKKQNSDIDVEVQPGATDAEYLEILHSHLGNLFEQVRPQLTFFQ 272          
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A835Z933_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z933_9STRA)

HSP 1 Score: 275 bits (704), Expect = 9.190e-86
Identity = 147/265 (55.47%), Postives = 178/265 (67.17%), Query Frame = 2
Query:  338 DVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANA-------------GESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            DVY V LP  HRFPM KYR+VRE +Q EL G                          A+FSVSP+AS  DL TTH   YV R + G  T +E+R VGFPWSE  V R+LSS+GGTV   HA        RD    AG    LF+GH+AGGTHHAF+DRGEGFCVFSDIAVAANVALRD+ E VR++LI+D DVHQGNGNA LF    AV++FS+H +ANYFS ++ SD+D+EV+  +GDD YL+L+ +  P L+DQVRPDL+FYQ
Sbjct:    1 DVYEVPLPTTHRFPMPKYRMVREMIQAELAGSSXXXXXXXXXXXXXXXXXXXSAPMLATFSVSPLASYDDLITTHCPDYVTRVLTGNLTPKESRNVGFPWSEGHVNRTLSSIGGTVAAAHAVCT-SPAARD----AGAPFCLFAGHVAGGTHHAFYDRGEGFCVFSDIAVAANVALRDHAELVRKILIIDLDVHQGNGNAALFAGNDAVYTFSMHCKANYFSARQYSDMDVEVDASAGDDAYLSLVEQWVPKLLDQVRPDLVFYQ 260          
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A7S1U809_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U809_9STRA)

HSP 1 Score: 267 bits (682), Expect = 5.950e-82
Identity = 145/272 (53.31%), Postives = 177/272 (65.07%), Query Frame = 2
Query:  284 GPEAGQPS-TKLELAL-FYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            GPE   P+      AL FYNDVY   LP+GHRFPMEKYRLVR  LQ  L+  G           A+F VSP+AS  DL TTH   YV+R++ G  T  ENR +GFPWSEA V R++SS GGTV    A    GG             P F+G +AGGTHHAF+D GEGFCVFSDIAVAAN ALR++   +R+VL+VD DVHQGNGNAVLF   PAVF++S     N FS++E SD+D+ V  G+GDD YL +L E  PA+ ++VRP L+F+Q
Sbjct:   43 GPEPSGPAWDPAHPALYFYNDVYEFPLPEGHRFPMEKYRLVRRKLQHTLVPGG----------LAAFDVSPLASREDLVTTHCPAYVDRFLTGELTPGENRCIGFPWSEAGVDRAVSSTGGTVAAARAVLEDGG-------------PRFAGQVAGGTHHAFYDYGEGFCVFSDIAVAANCALREHAAWLRRVLVVDLDVHQGNGNAVLFADDPAVFTYSAQCEQNLFSKREASDVDVWVPSGAGDDAYLGMLRETLPAVFERVRPQLVFFQ 291          
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A0G4EU19_VITBC (Hist_deacetyl domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EU19_VITBC)

HSP 1 Score: 264 bits (675), Expect = 1.060e-80
Identity = 153/288 (53.12%), Postives = 184/288 (63.89%), Query Frame = 2
Query:  242 SLPWNSSSIDVFRRGPEAGQPSTKLELALFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGT----ANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            S  W+S  +   RR            L+L+YND++ V LP  H+FPM KYR VR  LQ  LLG    T     + G +  ASF+ SP+AS+ DL TTH   YV  + EG     + R +GFP    SV R+LSSVGGTV    A R     LR +  G     PLF+GHIAGGTHHAF DRGEGFC FSDIAVAANVALRDY + + ++LIVD DVHQGNGNAVLFQ +  VF+ SVH  ANYFS KE S +DIEV EG+GD  YL+LL++  P +V + RPDLIFYQ
Sbjct:   29 SARWSSREV---RRAAATRPGFYPAYLSLYYNDLFEVTLPPDHKFPMAKYREVRLRLQ-RLLGRTTNTNTDSRDQGNAVWASFAPSPLASIEDLHTTHCPSYVRAFCEGSLDPMQYRRIGFPRGHESVNRALSSVGGTVA---ATRDVCLALRRQRKGQEPTRPLFAGHIAGGTHHAFRDRGEGFCAFSDIAVAANVALRDYADVIERILIVDLDVHQGNGNAVLFQDQSNVFTLSVHCTANYFSPKEASHVDIEVPEGTGDGAYLSLLAKTLPDIVREFRPDLIFYQ 309          
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: L1JLJ8_GUITC (Histone deacetylase HstD n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JLJ8_GUITC)

HSP 1 Score: 262 bits (669), Expect = 6.030e-80
Identity = 141/266 (53.01%), Postives = 175/266 (65.79%), Query Frame = 2
Query:  296 GQPSTKLELALFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            G  + + +L LFYND+Y V+LP GHRFPM KYR VRE +           AN           SP+A   D+ TTH   Y+ R++    TD+ENR +GFPWS   VKR+LSSVGGTV   H+    G +L              +GHIAGGTHHAF DRGEGFCVFSDIAVAANVALRDY E ++++LIVDCDVHQGNGNAVLFQ  P VF+FS+H   N+FSE+++SDLD+E+     DD+Y++LL    P  VD+ +PDLIFYQ
Sbjct:   94 GGKNAEKQLRLFYNDIYHVELPQGHRFPMHKYRAVRERIH---------HANKPNIV---LQPSPIARTDDIRTTHCHEYLRRFLCNMLTDKENRNIGFPWSPQGVKRTLSSVGGTVAAMHSST--GHKL--------------AGHIAGGTHHAFRDRGEGFCVFSDIAVAANVALRDY-EHIKKILIVDCDVHQGNGNAVLFQDNPFVFTFSMHCAGNFFSERQKSDLDVEIPVHCKDDDYMSLLHYWLPLAVDRSQPDLIFYQ 330          
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: F0YDD4_AURAN (Uncharacterized protein HDA n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDD4_AURAN)

HSP 1 Score: 257 bits (657), Expect = 7.820e-79
Identity = 140/258 (54.26%), Postives = 167/258 (64.73%), Query Frame = 2
Query:  329 FYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHA---RRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            +YNDV+   LP+ HRFPM KYRLVRE LQ E +             +A+F  SP+ASL DL TTH RGY ER++ G+ T  ENR +GFPWS A V R+LSS GGTV    A    R  GG LR             +GH+AGGTHHAF+DRGEGFCVFSDIAVAANV LRDY + V ++L+VD DVHQGNGNA LF+  PAV +FS+H   NYFSEK  SD+D+EV  G+GD EYL LL      L      D++F Q
Sbjct:   24 YYNDVWEFPLPENHRFPMAKYRLVREALQAEGV-------------AAAFEPSPLASLTDLTTTHCRGYCERFVGGKLTAAENRNIGFPWSPAGVNRALSSTGGTVAAARAVADARRAGGGLR------------VAGHVAGGTHHAFFDRGEGFCVFSDIAVAANVLLRDYGDVVEKILVVDVDVHQGNGNAKLFEGAPAVTTFSMHCDGNYFSEKRASDVDVEVPAGAGDGEYLRLLKSYVQMLAGG-GADVVFLQ 255          
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: W7TGL1_9STRA (Histone deacetylase superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGL1_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.510e-76
Identity = 140/279 (50.18%), Postives = 175/279 (62.72%), Query Frame = 2
Query:  260 SSIDVFRRGPEAG-QPSTKLELALFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
            SS+ V     + G Q   K  L  FYND++ V +P+GHRFPMEKY   R   Q  L    G            F  SP++++ DL TTH+R Y++RY+ G  T +E R  GF W+E  V R+LSSVGGTV   HA  V   +L           P+   H+AGGTHHAF  R EGFC+FSDIAVAANVALRDYP+ VR++LIVD D HQGNGNAVLFQ    VF+FS+H  ANYFSEK+ SDLD+EV+ G+GD  YL+LL    P + +   PDL+F+Q
Sbjct:  108 SSVVVTSNTAQGGDQRGVKDPLYFFYNDIFHVKMPEGHRFPMEKYAAFRRQAQQRLFSLPG----------VGFHPSPLSTVRDLETTHDRSYIQRYLVGNVTAQEKRESGFDWNEQHVNRTLSSVGGTVAATHA--VLQSDL-----------PV-GAHLAGGTHHAFQARMEGFCIFSDIAVAANVALRDYPDKVRKILIVDLDTHQGNGNAVLFQDDSRVFTFSMHCDANYFSEKQASDLDVEVKPGTGDAGYLSLLERYLPLVFEAQAPDLVFFQ 362          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY69_ECTSI1.560e-13679.23Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A7S1IVC4_9EUGL6.580e-8757.65Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4B912_CHRCT1.630e-8658.20Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4B9B1_CHRCT1.970e-8658.20Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A835Z933_9STRA9.190e-8655.47Hist_deacetyl domain-containing protein n=1 Tax=Tr... [more]
A0A7S1U809_9STRA5.950e-8253.31Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0G4EU19_VITBC1.060e-8053.13Hist_deacetyl domain-containing protein n=2 Tax=Vi... [more]
L1JLJ8_GUITC6.030e-8053.01Histone deacetylase HstD n=1 Tax=Guillardia theta ... [more]
F0YDD4_AURAN7.820e-7954.26Uncharacterized protein HDA n=1 Tax=Aureococcus an... [more]
W7TGL1_9STRA1.510e-7650.18Histone deacetylase superfamily n=1 Tax=Nannochlor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig102contigP-lacustris_contig102:105802..111972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.1
Seed ortholog evalue2.5e-97
Seed eggNOG ortholog2880.D7FY69
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein deacetylase activity
EggNOG OGsCOG0123@1,KOG1344@2759
Ec32 ortholog descriptionHistone deacetylase
Ec32 orthologEc-24_003590.1
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size1369
Cds size879
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.3097186-UTR-P-lacustris_contig102:105801..1059121622815290.3097186-UTR-P-lacustris_contig102:105801..105912Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig102 105802..105912 -
1693493454.278911-UTR-P-lacustris_contig102:105801..1059121693493454.278911-UTR-P-lacustris_contig102:105801..105912Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig102 105802..105912 -
1622815290.4108193-UTR-P-lacustris_contig102:110028..1103271622815290.4108193-UTR-P-lacustris_contig102:110028..110327Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig102 110029..110327 -
1693493454.3628142-UTR-P-lacustris_contig102:110028..1103271693493454.3628142-UTR-P-lacustris_contig102:110028..110327Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig102 110029..110327 -
1622815290.4215364-UTR-P-lacustris_contig102:111892..1119721622815290.4215364-UTR-P-lacustris_contig102:111892..111972Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig102 111893..111972 -
1693493454.3719049-UTR-P-lacustris_contig102:111892..1119721693493454.3719049-UTR-P-lacustris_contig102:111892..111972Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig102 111893..111972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.3219082-CDS-P-lacustris_contig102:105912..1060771622815290.3219082-CDS-P-lacustris_contig102:105912..106077Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 105913..106077 -
1693493454.2892592-CDS-P-lacustris_contig102:105912..1060771693493454.2892592-CDS-P-lacustris_contig102:105912..106077Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 105913..106077 -
1622815290.3335316-CDS-P-lacustris_contig102:106472..1065921622815290.3335316-CDS-P-lacustris_contig102:106472..106592Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 106473..106592 -
1693493454.2974102-CDS-P-lacustris_contig102:106472..1065921693493454.2974102-CDS-P-lacustris_contig102:106472..106592Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 106473..106592 -
1622815290.346516-CDS-P-lacustris_contig102:107102..1071921622815290.346516-CDS-P-lacustris_contig102:107102..107192Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 107103..107192 -
1693493454.3058112-CDS-P-lacustris_contig102:107102..1071921693493454.3058112-CDS-P-lacustris_contig102:107102..107192Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 107103..107192 -
1622815290.3557866-CDS-P-lacustris_contig102:107734..1078121622815290.3557866-CDS-P-lacustris_contig102:107734..107812Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 107735..107812 -
1693493454.3148324-CDS-P-lacustris_contig102:107734..1078121693493454.3148324-CDS-P-lacustris_contig102:107734..107812Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 107735..107812 -
1622815290.366304-CDS-P-lacustris_contig102:108291..1084451622815290.366304-CDS-P-lacustris_contig102:108291..108445Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 108292..108445 -
1693493454.324359-CDS-P-lacustris_contig102:108291..1084451693493454.324359-CDS-P-lacustris_contig102:108291..108445Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 108292..108445 -
1622815290.379545-CDS-P-lacustris_contig102:109082..1091651622815290.379545-CDS-P-lacustris_contig102:109082..109165Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 109083..109165 -
1693493454.3341174-CDS-P-lacustris_contig102:109082..1091651693493454.3341174-CDS-P-lacustris_contig102:109082..109165Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 109083..109165 -
1622815290.3877907-CDS-P-lacustris_contig102:109670..1098321622815290.3877907-CDS-P-lacustris_contig102:109670..109832Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 109671..109832 -
1693493454.3444467-CDS-P-lacustris_contig102:109670..1098321693493454.3444467-CDS-P-lacustris_contig102:109670..109832Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 109671..109832 -
1622815290.396504-CDS-P-lacustris_contig102:110001..1100281622815290.396504-CDS-P-lacustris_contig102:110001..110028Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 110002..110028 -
1693493454.353214-CDS-P-lacustris_contig102:110001..1100281693493454.353214-CDS-P-lacustris_contig102:110001..110028Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 110002..110028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig102.273.1prot_P-lacustris_contig102.273.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig102 105913..110028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig102.273.1

>prot_P-lacustris_contig102.273.1 ID=prot_P-lacustris_contig102.273.1|Name=mRNA_P-lacustris_contig102.273.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=293bp
MEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHER
GYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGG
ELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALR
DYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEES
DLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQLSHPFRGTHNKA
AGLQLRPGNFARTVVSPYWVGILLSSTNSRERCQARLLFPTA*
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mRNA from alignment at P-lacustris_contig102:105802..111972-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig102.273.1 ID=mRNA_P-lacustris_contig102.273.1|Name=mRNA_P-lacustris_contig102.273.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6171bp|location=Sequence derived from alignment at P-lacustris_contig102:105802..111972- (Pleurocladia lacustris SAG_25_93)
CGAACAACGCACACGCCCAGCTGCCAAGGCATCAACCAAGCTGCAAGAAG TCCCCAGACCTTCTACACGTCTACTAACAGGTAGGTATGTATGCATTTGC TGTATCTTCAAAATACGATCGAGGCCCGAGTCTTGGTCCTCTATGTCTGA TTATACAGCATTCGTAGATTCTGTGCTGCGTGCTGTGTATCGTTCGTGTG GTGTAATGCCGATTGCCCCATGGTTACGGCTGCCACTTACGTGTATTCAC CGGCTGAGACTAAGGTAGTACCATCCAGGGAAGTCAAACAGAAAGCAGCT TCTTGCATCAACTGTTAACGCACAGCACCATAAGTGGTGTACATAACTTC ATAATTACTGCTCCTGTAGTCTACAAAATACAAATTCAGCTAGCGGCAAT TGGGTGCTACGACAGCAAACCTACACGAACTTTCAACGTTGCAGTAAGAG CAGCCGGCTCGGCCTGAGGTTTGTATTGTGCTGTAGTAATGAACCAATTT TCTCACACGCATCTTACTCTTTTAAACCAATGGTGTGTTCTGACTGCTGC ATCGACCGCTAACCAACCGGCTGACCAATGAAAAAACGCAATTCGTGGCG GAACAACAAGCGAAAACGCTATGCCAGACTATACTCGAGTATGTAAAACG CATATTAAACCCGCGTGTGTGGTGCGTCCCAGCTTTTTGTTCTGGGCACT AGGTAGCCTCGACACATTTCGGTGATTCGTGCATGTGTAGGCGGGCGCAT CAGCCGGGGTCGCACAGGAGGAAAGGCGCACAGGAGTTGCTTTCTGTTTT CACTTTCCTTCAGGCGTGCTTGCCTCATGTAGTCGTCATCGCGAAAATGT AGGCACGTTGTTAGAAAATATCCCCAGATCGCGTGACTTCACCGCGGATC GAAACCACGACCAAGCTGTGGATTGGATGAGTCCTCCCGCTCCCGCGTGC GGTCCCACCCATACTTTGTGATATTGTATCATGAAGGCCGGTCTGGAGCT TAGTTGACTCACCCATGCTTTCATGCCATCAGTAGCGATATCAGTCAGTA TTTCCTCGACCGCCTGTGATAAGGGCGTGTCATTGGTGTAGCTGTGACAA GGTCGGGCCATTGCTGGCTGCATTGGTGGCTGCCCTGTTTGCTAAGCTAT CGACTCTGTACACACACTGCCCATCTTTCGCATTACGAATTCGTCTATGG GGCAAGCCCCGTCCATCGATCGGCTCAGGAAACCCCCGACTCGAAACCAC GGTGCCTCGAGAAGTGGGTCGGCAACGTCGGCCGCCCGAAGGTGTACTTG CAGAGCAGCTGTCATGCGAGCTACCGAGACCTTGTGAGTCCCGGGACGTC CATCGCCTTGTTCCGACAGCCGAGATCTGTCTCTTCCTGCGGACAACATG AACTCCCTTCTGAGGGGCAGGGCTCCCAAGATTATGCTGTGGGTGCTGCG GGAGCACACCGGGAGACTCCCCCATCACTGCAAAGACATCCCACCCCCCC CGAGGACTTCGATGTTTTTTTGTGCGTTCGAAAAGTCTGTACCGTCCGCG TATGCCTTCTATGCCACTTGCTTCGCGTCCCGCTTTGTTCAGCGGATTTA TGGTGCCCAATTCCTTCTTGTCATCGCCAACGTTGGGCGCAGCAGGGCGT ACGGACGACTGGCTGCATGAGGCCTGCCCCGCCGGCGCTCCTGAAGACGA TCTCCATGCTCCTTCCGTGCGCTACCTCTGCTTCACCCATAAGACGAGCG ACCGCGAGAGGCATGGTCATGCCCCACGGCAAATTTGTCTCCCAGAAGGC TGCGGCAGCTTACCCTGGAACAGCAGCAGTATCGATGTATTCAGGAGGGG GCCAGAAGCGGGGCAGCCGAGCACGAAGCTCGAGCTCGCGCTGTTCTACA ACGACGTCTATCGGGTTGATCTGCCAGACGGGCACCGTTTTCCCATGGAG AAGTACCGCTTAGTTCGCGAGGTGAGAAAACACGAATACGACGAAAGCGA CCGGGCACGCTCGGGAACCACCCGTGTGTTGGAGTACAACACAGTGTGAT ACCTGGAGCGCCACCGCAACGCCCGACCATAAAACTACATCAGCGAATAA ATGCCCATCGAGACTCACCCTCGCCTCCCGTGTTTGGCAGGGGTTGCAAG GCGAGCTGCTGGGCGAAGGTGGCGGCACCGCTAATGCCGGAGAATCTTTC TCGGCGTCGTTCTCAGTATCCCCGGTGGCTAGTCTGGCCGACCTGTGCAC GACGCACGAGAGGGGGTATGTGGAGCGATATATCGAGGGCCGTTTCACAG ATGTGAGAGCTAGTACCTCAGGAGGCAAAGGAAACTTTTTGGTAGATCCG AGCATCACCCACGCCTTGGTTCTCGCCTTGGTGGGACTATTAGCTTGCAC AGTCCTGGCTCTCTCACAAGGGGGTGCCTGAAAAGAGCCTGGGCCCGAGG TTTGCCTACGAGTACGCCAACCTTGTCAACGGCTTGCAGGAGAGTGCTGC ACCTCACGTACCTTTTCTCGCACGTGCCCGAGAGTGTTCGTTTTCAATCC CAAGGGCCCCGATGCTGTGGACTAGCTGCGCATGTCACACTTAGTTCTGG TTTCCTCTGCGGAACTCGGGCGAGCCTTAGCTAGACCTGAGCGTTGCGGT AGCAGGTGACCAATCAAGGCGGTTTTCCAGGGCCGCGTCCATGGTCGTGA GTGCTGACGAGCCTAAGCATTTCCTCTATTGATACTTTCCGCCCCCTCGT CACACCGTCGTCCGCTCGCTCTCCGGATTCGATTGATGGCTCGGCTCCGG AAGCCAGAGAGAGAACAGAGCAGTGGGGTTTCCCTGGAGCGAGGCATCGG TGAAGCGCAGTCTAAGCTCCGTCGGAGGCACAGTAGGCGGGTGCTTCGAG TGTTGAAAGTGGTTGTTTGGTTGGTTAGTTTTGGGATTCGAAGCGTCGGT GGTCTACTACCTTCTAGCCGGGACACCGTCCAGGAGAAGTGTTGCCGCTG TGTCTAGGCACATCGAGGGGGGAACGTCACGTGCGTCGGTGATGGTTTGT GGCATACCGCCGCTATTTATCAATGGGTGACTCATCTGCGGGCGGCCCGA GTCTATCTTGTCTGATTCCAGAGGTCTTCGTTCGCAGCGAATTCCACAAT GCCGGTCCGATCAATCGATTGATCTATCAGTCTAGGGCAGTCCTCGAAGA ACGTAGTAGTTGACATGATAGACGTAGTACTATGCCCAAGGCCGGCCCGC GACCGCAGCATGTCACGTTAAATGTTGGTGGTTGTAACGATTACGATACC GGAACCCTTTCGTTAGGATCCAGGTCACCCTCCGTGCAACTCGCCAAACC CATAACGACCCTGGGCGCTCGGTCTATACCACCGAAGCCTGTTCCGTCCG AAATCCGACGCGTGAAAACCGGGCGTGCTCCGTCCCGGCCTTGGAGTGGA TGCGACATCCATGGCATTGGGGAGACAGCATGTATCGTCGTGAGTACCTC CCCCTGTCCGTGCCGCTTCCCCGACAGCTGCCATGCACGCCGTGTGTGGG GTGGCGAGCTGCGGGATCGCGTCGGTGGGGCTGGGAAGGCACCGCCGCTG TTCTCGGGTCACATCGCCGGCGGGACGCACCACGCCTTTTGGGACCGAGG AGAAGGGTTTTGCGTCTTCAGTGACATCGCCGTGAGTTGTTGTCGCCGCT AACTGCTGCTGCTGCTGCTGCTGTCGTTGTCGTCTCTTGTCGTCGTTGGC GGTGGTGGTGCTGCGTCCTTTCCCTGTGAAATCCTTTGCGGTAGTTTCAA CCAAAGAAGAAGTAACATCCCTCGAGTGTCTACGTGCGAGGACAATCGTG ATGGTGCTTGTGTTATTTCCGGCGGTGTTGGAACCGCCTCGTTTTACCGC ATGCCATTTTTTCAAGGAGCGAAAGGGCGTGGCTGACGGGAACTATGATT CATGGCTGCCCTTCATGTAACATACGAAAGTCCACCGCAACAGAAGGGCT TAACATGAATGGTTTGCTCTTATTCTTTGATTTAGGGGGAGGGTAGAGCG CGAGAGTGTCTCCTGAAATACCAAGCACACTTCCTTGCCCTGTTGCTGTT GTCGCCTCTTTTATGCTGCTGCTGTCTTCGTTGTGGTTCGCATCACTGGT GAATTGATAGGTGGCGGCTAACGTGGCCCTTCGAGACTACCCTGAAACAG TAAGGCAGGTCTTGATCGTCGACTGCGACGTGCACCAGGTAACGCAAGCG ACCGCAATTCCAATTTGCCCCGGCTTCTACCGCGACTGATTTACATCTAA CGTCATCCTACCATATCCATCCAGCGTAATCGCCACATGATCGAGTGTGG GCATCATTTTTTTAGCACGACCTGAGTGACGCGTTGCTGTGTACATCGAC GGGCACCTTGGTTCCACAATGTCCGGTTTTCAATGATCCCGTACCGCATA TAATTATGCTGTGGTTGGTCACCGACTGCAACCTGGCCCGCATCAAATCC CGCCGAACCGGTAATACCACTACTTTCGTACCCCGAAGGCCGTTTTTGTC ATTCAATCGCGGAAATAGGTCGAGCGCGAGCTGCTCAAGCAGCGCTTAGT GCTATGTTCACTTCTTTGTACCGATGAAATTTTCGTGTTCACTATGCAAC AGCCGTCATTGTGTCTCTTGCCCAAATGCATCGATTTTCGCCACTGGAAA GAAAGACACGCAAGACGGGGGTAAAAAAGGGGTATACCGGCAAGCGCGAT TTTTGAGCCTGAATGTAAATAAAATGTCAGGGAAATGGAAATGCCGTGCT GTTCCAGTCGAAACCCGCCGTGTTTTCGTTCAGCGTCCACTACAGGGCCA ACTATTTCTCGGAGAAAGAGGTGAGCACGTCATGACGTTTTCGTCTTTCG TTCCTTCTACCCGCCGCAGGACACGATGAAATACATGACGATGGAACTTC CCAACACCCCGTTCGTTCGATCAATCTTGTGAGCACGGAGTGCCCACGGT ACGAGCATGTTGCCGAATGTCGTTCAGTTGAAAAGCGTTCGCCCGTGGAG ATTTCAGAGCATTCTCTTATGAACCAATTTGTCGAGTTCGGGTCGCCGGG CGGCCAAGAGGTTCTCGAAGGTTCTCGGCTACGACCGCACTTGTATTCCC CCTTGGTCCGTAGGTTGATGGTCTGGAGTGTTGGCTACGACGATCCCAAA TGATGGGTTGACACCCGTCCCATGTGTGGTTGGCGTATTTTTGTCCATCC GGCTTTGTGGGGATGCGAGGTTTATGGTCAAAAGTTCGCGACATGCGTGA TAGAGAGTGCCCCCACAACCCCCTGTGAGATCTGTGGACCCCTCCCTTTG CTACGCATACAACCGTCGTGGTATATACAGGAGTCTGACTTGGACATCGA GGTGGAAGAAGGCTCCGGAGACGACGAATATCTAGCCCTTCTTTCCGAAC GATTTCCAGCTCTAGTGGATCAGGTCCGACCGGACCTCATATTTTACCAG GTACGGACGTAAATATTTTCAACTATTCGGCCGGTTTGCCCACTCCCAAG CACACAGACAAAGGCTAAGGTTTCCTGCGAAGGTCCGCAGTATTTGTTGT TTTTTGTGTCTTGTCTGGGTATATTGCACGCGTTTCGGTACATGTCGCAG CAAGGGTTGCTCCAGGGCTGTTTACCACCACAACTACCACAACGCAACAA TGGGTTTCAGACATAACTTTGTCGTCGTTTGGAGGTGCAAAATGGGACAG TTCCTTTAATCTCGGAGCATGTGGACATAATTTCATAATTTCATAATTTC AAACCGGAACGTAGTGAGTGAGTGAGCTGCGGCAATCCTTTTGCTGCTGC TGCTCATCTGTGCCTTTTTTTTTTTTTTTTTCTTCTCTCAACCAGCTCTC TCACCCTTTTCGAGGCACACACAACAAAGCGGCCGGGCTTCAGCTGAGGC CGGGCAATTTCGCTAGGACCGTTGTCAGTCCTTATTGGGTGGGTATCTTG TTGAGCAGTACCAACAGTCGAGAACGCTGTCAAGCGCGTTTGTTGTTTCC CACCGCGTAAACGCTCTCCGTTCTCCATGGGGGTCAGGGAGGTGTCGATC CCCTGAAACACGACCGCTTGGGAGGTTAAACCTCACGAGAGAAGGACTGC GGGTTCGAAATCGCCTCGTGT
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Coding sequence (CDS) from alignment at P-lacustris_contig102:105802..111972-

>mRNA_P-lacustris_contig102.273.1 ID=mRNA_P-lacustris_contig102.273.1|Name=mRNA_P-lacustris_contig102.273.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1758bp|location=Sequence derived from alignment at P-lacustris_contig102:105802..111972- (Pleurocladia lacustris SAG_25_93)
ATGGAGAAGTACCGCTTAGTTCGCGAGATGGAGAAGTACCGCTTAGTTCG
CGAGGGGTTGCAAGGCGAGCTGCTGGGCGAAGGTGGCGGCACCGCTAATG
CCGGAGAATCTTTCTCGGCGTCGTTCTCAGTATCCCCGGTGGCTAGTCTG
GCCGACCTGTGCACGACGCACGAGAGGGGGTATGTGGAGCGATATATCGA
GGGCCGTTTCACAGATGGGTTGCAAGGCGAGCTGCTGGGCGAAGGTGGCG
GCACCGCTAATGCCGGAGAATCTTTCTCGGCGTCGTTCTCAGTATCCCCG
GTGGCTAGTCTGGCCGACCTGTGCACGACGCACGAGAGGGGGTATGTGGA
GCGATATATCGAGGGCCGTTTCACAGATAGAGAGAACAGAGCAGTGGGGT
TTCCCTGGAGCGAGGCATCGGTGAAGCGCAGTCTAAGCTCCGTCGGAGGC
ACAGTAGGCGGAGAGAGAACAGAGCAGTGGGGTTTCCCTGGAGCGAGGCA
TCGGTGAAGCGCAGTCTAAGCTCCGTCGGAGGCACAGTAGGCGGCTGCCA
TGCACGCCGTGTGTGGGGTGGCGAGCTGCGGGATCGCGTCGGTGGGGCTG
GGAAGGCACCGCCGCTGTTCTCGGGTCACATCGCCGGCGGGACGCACCAC
GCCTTTTGGGACCGAGGAGAAGGGTTTTGCGTCTTCAGTGACATCGCCCT
GCCATGCACGCCGTGTGTGGGGTGGCGAGCTGCGGGATCGCGTCGGTGGG
GCTGGGAAGGCACCGCCGCTGTTCTCGGGTCACATCGCCGGCGGGACGCA
CCACGCCTTTTGGGACCGAGGAGAAGGGTTTTGCGTCTTCAGTGACATCG
CCGTGGCGGCTAACGTGGCCCTTCGAGACTACCCTGAAACAGTAAGGCAG
GTCTTGATCGTCGACTGCGACGTGCACCAGGTGGCGGCTAACGTGGCCCT
TCGAGACTACCCTGAAACAGTAAGGCAGGTCTTGATCGTCGACTGCGACG
TGCACCAGGGAAATGGAAATGCCGTGCTGTTCCAGTCGAAACCCGCCGTG
TTTTCGTTCAGCGTCCACTACAGGGCCAACTATTTCTCGGAGAAAGAGGG
AAATGGAAATGCCGTGCTGTTCCAGTCGAAACCCGCCGTGTTTTCGTTCA
GCGTCCACTACAGGGCCAACTATTTCTCGGAGAAAGAGGAGTCTGACTTG
GACATCGAGGTGGAAGAAGGCTCCGGAGACGACGAATATCTAGCCCTTCT
TTCCGAACGATTTCCAGCTCTAGTGGATCAGGTCCGACCGGACCTCATAT
TTTACCAGGAGTCTGACTTGGACATCGAGGTGGAAGAAGGCTCCGGAGAC
GACGAATATCTAGCCCTTCTTTCCGAACGATTTCCAGCTCTAGTGGATCA
GGTCCGACCGGACCTCATATTTTACCAGCTCTCTCACCCTTTTCGAGGCA
CACACAACAAAGCGGCCGGGCTTCAGCTGAGGCCGGGCAATTTCGCTAGG
ACCGTTGTCAGTCCTTATTGGGTGGGTATCTTGTTGAGCAGTACCAACAG
TCGAGAACGCTGTCAAGCGCGTTTGTTGTTTCCCACCGCGTAACTCTCTC
ACCCTTTTCGAGGCACACACAACAAAGCGGCCGGGCTTCAGCTGAGGCCG
GGCAATTTCGCTAGGACCGTTGTCAGTCCTTATTGGGTGGGTATCTTGTT
GAGCAGTACCAACAGTCGAGAACGCTGTCAAGCGCGTTTGTTGTTTCCCA
CCGCGTAA
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