mRNA_P-lacustris_contig102.273.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: D7FY69_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY69_ECTSI) HSP 1 Score: 405 bits (1040), Expect = 1.560e-136 Identity = 206/260 (79.23%), Postives = 224/260 (86.15%), Query Frame = 2 Query: 317 ELALFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPP-LFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
EL LFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLG G + SF+VSP ASL DLCTTH++GYVERY EGRFT+RENR VGFPWSEASVKRSLSSVGGTV HA GELRDR GA + PP LFSGHIAGGTHHAF DRGEGFCVFSDIAVAANVALRDYPET+RQ+LIVDCDVHQGNGNAVLF+SKP V +FS+H +ANYFSEKE+SD+DIEVEEG+GD+EYL+LLSER P+LVD VRPDLIFYQ
Sbjct: 8 ELPLFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGRVNGIP------AVSFAVSPTASLDDLCTTHDKGYVERYFEGRFTNRENRTVGFPWSEASVKRSLSSVGGTVAAMHAVCA-DGELRDRRPGARRTPPSLFSGHIAGGTHHAFSDRGEGFCVFSDIAVAANVALRDYPETIRQILIVDCDVHQGNGNAVLFKSKPEVSTFSIHCKANYFSEKEDSDVDIEVEEGAGDEEYLSLLSERLPSLVDHVRPDLIFYQ 260
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A7S1IVC4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IVC4_9EUGL) HSP 1 Score: 278 bits (711), Expect = 6.580e-87 Identity = 147/255 (57.65%), Postives = 177/255 (69.41%), Query Frame = 2 Query: 329 FYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
+YNDVY+V LP GHRFPMEKYR+VRE LQ LL +G A F VSP+A+ DLC H+ YV RY G FTD ENR VGFPWS SV RSLSSVGGTV H GKA F+ H+AGGTHHAF D GEGFC+FSDIAVAA VALRDYP+ ++++LIVD DVHQGNGNAVLF+++ VF+FS+H + NYFS+K+ SDLDIE+ +G D EYLA+L L D+V+PDL+F+Q
Sbjct: 25 YYNDVYKVPLPQGHRFPMEKYRMVRERLQC-LLPQG----------EALFEVSPLATTRDLCLVHDHTYVNRYRTGAFTDAENRKVGFPWSINSVNRSLSSVGGTVAATHMVCT------------GKA--FFAAHLAGGTHHAFRDHGEGFCIFSDIAVAATVALRDYPKIIKKILIVDLDVHQGNGNAVLFKNEDRVFTFSMHCKQNYFSQKQTSDLDIELPKGCTDQEYLAVLQMHLARLFDRVQPDLVFFQ 254
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A7S4B912_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B912_CHRCT) HSP 1 Score: 278 bits (710), Expect = 1.630e-86 Identity = 149/256 (58.20%), Postives = 178/256 (69.53%), Query Frame = 2 Query: 326 LFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
LFYND+Y V LP GHRFPM KYRLVR GLQ EL S A+F SP+A+++DL T H+ YVERY+ G FT +ENR VGFPWS SVKRSLSS GGTV HA + +R GA P F+GH+AGGTHHAF DRGEGFCVF+DIAVAA VALRDY E+V++VLIVD DVHQGNG A +F P VF+FS+H NYFS+K+ SD+D+EV+ G+ D EYL +L L +QVRP L F+Q
Sbjct: 38 LFYNDLYEVPLPPGHRFPMAKYRLVRLGLQRELE----------PSNLATFLPSPLAAVSDLTTCHDATYVERYVTGTFTPQENRRVGFPWSIESVKRSLSSTGGTVAATHA-------VCNRTPGA----PRFAGHLAGGTHHAFADRGEGFCVFNDIAVAACVALRDYKESVQRVLIVDLDVHQGNGCAAIFADNPNVFTFSMHCAGNYFSKKQNSDIDVEVQPGATDAEYLEILHSHLGNLFEQVRPQLTFFQ 272
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A7S4B9B1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B9B1_CHRCT) HSP 1 Score: 278 bits (710), Expect = 1.970e-86 Identity = 149/256 (58.20%), Postives = 178/256 (69.53%), Query Frame = 2 Query: 326 LFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
LFYND+Y V LP GHRFPM KYRLVR GLQ EL S A+F SP+A+++DL T H+ YVERY+ G FT +ENR VGFPWS SVKRSLSS GGTV HA + +R GA P F+GH+AGGTHHAF DRGEGFCVF+DIAVAA VALRDY E+V++VLIVD DVHQGNG A +F P VF+FS+H NYFS+K+ SD+D+EV+ G+ D EYL +L L +QVRP L F+Q
Sbjct: 38 LFYNDLYEVPLPPGHRFPMAKYRLVRLGLQRELE----------PSNLATFLPSPLAAVSDLTTCHDATYVERYVTGTFTPQENRRVGFPWSIESVKRSLSSTGGTVAATHA-------VCNRTPGA----PRFAGHLAGGTHHAFADRGEGFCVFNDIAVAACVALRDYKESVQRVLIVDLDVHQGNGCAAIFADNPNVFTFSMHCAGNYFSKKQNSDIDVEVQPGATDAEYLEILHSHLGNLFEQVRPQLTFFQ 272
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A835Z933_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z933_9STRA) HSP 1 Score: 275 bits (704), Expect = 9.190e-86 Identity = 147/265 (55.47%), Postives = 178/265 (67.17%), Query Frame = 2 Query: 338 DVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANA-------------GESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
DVY V LP HRFPM KYR+VRE +Q EL G A+FSVSP+AS DL TTH YV R + G T +E+R VGFPWSE V R+LSS+GGTV HA RD AG LF+GH+AGGTHHAF+DRGEGFCVFSDIAVAANVALRD+ E VR++LI+D DVHQGNGNA LF AV++FS+H +ANYFS ++ SD+D+EV+ +GDD YL+L+ + P L+DQVRPDL+FYQ
Sbjct: 1 DVYEVPLPTTHRFPMPKYRMVREMIQAELAGSSXXXXXXXXXXXXXXXXXXXSAPMLATFSVSPLASYDDLITTHCPDYVTRVLTGNLTPKESRNVGFPWSEGHVNRTLSSIGGTVAAAHAVCT-SPAARD----AGAPFCLFAGHVAGGTHHAFYDRGEGFCVFSDIAVAANVALRDHAELVRKILIIDLDVHQGNGNAALFAGNDAVYTFSMHCKANYFSARQYSDMDVEVDASAGDDAYLSLVEQWVPKLLDQVRPDLVFYQ 260
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A7S1U809_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U809_9STRA) HSP 1 Score: 267 bits (682), Expect = 5.950e-82 Identity = 145/272 (53.31%), Postives = 177/272 (65.07%), Query Frame = 2 Query: 284 GPEAGQPS-TKLELAL-FYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
GPE P+ AL FYNDVY LP+GHRFPMEKYRLVR LQ L+ G A+F VSP+AS DL TTH YV+R++ G T ENR +GFPWSEA V R++SS GGTV A GG P F+G +AGGTHHAF+D GEGFCVFSDIAVAAN ALR++ +R+VL+VD DVHQGNGNAVLF PAVF++S N FS++E SD+D+ V G+GDD YL +L E PA+ ++VRP L+F+Q
Sbjct: 43 GPEPSGPAWDPAHPALYFYNDVYEFPLPEGHRFPMEKYRLVRRKLQHTLVPGG----------LAAFDVSPLASREDLVTTHCPAYVDRFLTGELTPGENRCIGFPWSEAGVDRAVSSTGGTVAAARAVLEDGG-------------PRFAGQVAGGTHHAFYDYGEGFCVFSDIAVAANCALREHAAWLRRVLVVDLDVHQGNGNAVLFADDPAVFTYSAQCEQNLFSKREASDVDVWVPSGAGDDAYLGMLRETLPAVFERVRPQLVFFQ 291
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: A0A0G4EU19_VITBC (Hist_deacetyl domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EU19_VITBC) HSP 1 Score: 264 bits (675), Expect = 1.060e-80 Identity = 153/288 (53.12%), Postives = 184/288 (63.89%), Query Frame = 2 Query: 242 SLPWNSSSIDVFRRGPEAGQPSTKLELALFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGT----ANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
S W+S + RR L+L+YND++ V LP H+FPM KYR VR LQ LLG T + G + ASF+ SP+AS+ DL TTH YV + EG + R +GFP SV R+LSSVGGTV A R LR + G PLF+GHIAGGTHHAF DRGEGFC FSDIAVAANVALRDY + + ++LIVD DVHQGNGNAVLFQ + VF+ SVH ANYFS KE S +DIEV EG+GD YL+LL++ P +V + RPDLIFYQ
Sbjct: 29 SARWSSREV---RRAAATRPGFYPAYLSLYYNDLFEVTLPPDHKFPMAKYREVRLRLQ-RLLGRTTNTNTDSRDQGNAVWASFAPSPLASIEDLHTTHCPSYVRAFCEGSLDPMQYRRIGFPRGHESVNRALSSVGGTVA---ATRDVCLALRRQRKGQEPTRPLFAGHIAGGTHHAFRDRGEGFCAFSDIAVAANVALRDYADVIERILIVDLDVHQGNGNAVLFQDQSNVFTLSVHCTANYFSPKEASHVDIEVPEGTGDGAYLSLLAKTLPDIVREFRPDLIFYQ 309
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: L1JLJ8_GUITC (Histone deacetylase HstD n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JLJ8_GUITC) HSP 1 Score: 262 bits (669), Expect = 6.030e-80 Identity = 141/266 (53.01%), Postives = 175/266 (65.79%), Query Frame = 2 Query: 296 GQPSTKLELALFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
G + + +L LFYND+Y V+LP GHRFPM KYR VRE + AN SP+A D+ TTH Y+ R++ TD+ENR +GFPWS VKR+LSSVGGTV H+ G +L +GHIAGGTHHAF DRGEGFCVFSDIAVAANVALRDY E ++++LIVDCDVHQGNGNAVLFQ P VF+FS+H N+FSE+++SDLD+E+ DD+Y++LL P VD+ +PDLIFYQ
Sbjct: 94 GGKNAEKQLRLFYNDIYHVELPQGHRFPMHKYRAVRERIH---------HANKPNIV---LQPSPIARTDDIRTTHCHEYLRRFLCNMLTDKENRNIGFPWSPQGVKRTLSSVGGTVAAMHSST--GHKL--------------AGHIAGGTHHAFRDRGEGFCVFSDIAVAANVALRDY-EHIKKILIVDCDVHQGNGNAVLFQDNPFVFTFSMHCAGNFFSERQKSDLDVEIPVHCKDDDYMSLLHYWLPLAVDRSQPDLIFYQ 330
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: F0YDD4_AURAN (Uncharacterized protein HDA n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDD4_AURAN) HSP 1 Score: 257 bits (657), Expect = 7.820e-79 Identity = 140/258 (54.26%), Postives = 167/258 (64.73%), Query Frame = 2 Query: 329 FYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHA---RRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
+YNDV+ LP+ HRFPM KYRLVRE LQ E + +A+F SP+ASL DL TTH RGY ER++ G+ T ENR +GFPWS A V R+LSS GGTV A R GG LR +GH+AGGTHHAF+DRGEGFCVFSDIAVAANV LRDY + V ++L+VD DVHQGNGNA LF+ PAV +FS+H NYFSEK SD+D+EV G+GD EYL LL L D++F Q
Sbjct: 24 YYNDVWEFPLPENHRFPMAKYRLVREALQAEGV-------------AAAFEPSPLASLTDLTTTHCRGYCERFVGGKLTAAENRNIGFPWSPAGVNRALSSTGGTVAAARAVADARRAGGGLR------------VAGHVAGGTHHAFFDRGEGFCVFSDIAVAANVLLRDYGDVVEKILVVDVDVHQGNGNAKLFEGAPAVTTFSMHCDGNYFSEKRASDVDVEVPAGAGDGEYLRLLKSYVQMLAGG-GADVVFLQ 255
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Match: W7TGL1_9STRA (Histone deacetylase superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGL1_9STRA) HSP 1 Score: 255 bits (651), Expect = 1.510e-76 Identity = 140/279 (50.18%), Postives = 175/279 (62.72%), Query Frame = 2 Query: 260 SSIDVFRRGPEAG-QPSTKLELALFYNDVYRVDLPDGHRFPMEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERGYVERYIEGRFTDRENRAVGFPWSEASVKRSLSSVGGTVGGCHARRVWGGELRDRVGGAGKAPPLFSGHIAGGTHHAFWDRGEGFCVFSDIAVAANVALRDYPETVRQVLIVDCDVHQGNGNAVLFQSKPAVFSFSVHYRANYFSEKEESDLDIEVEEGSGDDEYLALLSERFPALVDQVRPDLIFYQ 1093
SS+ V + G Q K L FYND++ V +P+GHRFPMEKY R Q L G F SP++++ DL TTH+R Y++RY+ G T +E R GF W+E V R+LSSVGGTV HA V +L P+ H+AGGTHHAF R EGFC+FSDIAVAANVALRDYP+ VR++LIVD D HQGNGNAVLFQ VF+FS+H ANYFSEK+ SDLD+EV+ G+GD YL+LL P + + PDL+F+Q
Sbjct: 108 SSVVVTSNTAQGGDQRGVKDPLYFFYNDIFHVKMPEGHRFPMEKYAAFRRQAQQRLFSLPG----------VGFHPSPLSTVRDLETTHDRSYIQRYLVGNVTAQEKRESGFDWNEQHVNRTLSSVGGTVAATHA--VLQSDL-----------PV-GAHLAGGTHHAFQARMEGFCIFSDIAVAANVALRDYPDKVRKILIVDLDTHQGNGNAVLFQDDSRVFTFSMHCDANYFSEKQASDLDVEVKPGTGDAGYLSLLERYLPLVFEAQAPDLVFFQ 362 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig102.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig102.273.1 >prot_P-lacustris_contig102.273.1 ID=prot_P-lacustris_contig102.273.1|Name=mRNA_P-lacustris_contig102.273.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=293bp MEKYRLVREGLQGELLGEGGGTANAGESFSASFSVSPVASLADLCTTHERback to top mRNA from alignment at P-lacustris_contig102:105802..111972- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig102.273.1 ID=mRNA_P-lacustris_contig102.273.1|Name=mRNA_P-lacustris_contig102.273.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6171bp|location=Sequence derived from alignment at P-lacustris_contig102:105802..111972- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig102:105802..111972- >mRNA_P-lacustris_contig102.273.1 ID=mRNA_P-lacustris_contig102.273.1|Name=mRNA_P-lacustris_contig102.273.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1758bp|location=Sequence derived from alignment at P-lacustris_contig102:105802..111972- (Pleurocladia lacustris SAG_25_93)back to top |