Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 424 |
| Cds size | 396 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815286.390613-UTR-P-lacustris_contig1016:67899..67926 | 1622815286.390613-UTR-P-lacustris_contig1016:67899..67926 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1016 67900..67926 + |
| 1693493451.6150868-UTR-P-lacustris_contig1016:67899..67926 | 1693493451.6150868-UTR-P-lacustris_contig1016:67899..67926 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1016 67900..67926 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815286.4023657-CDS-P-lacustris_contig1016:67926..68322 | 1622815286.4023657-CDS-P-lacustris_contig1016:67926..68322 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1016 67927..68322 + |
| 1693493451.6233802-CDS-P-lacustris_contig1016:67926..68322 | 1693493451.6233802-CDS-P-lacustris_contig1016:67926..68322 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1016 67927..68322 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1016.245.1 >prot_P-lacustris_contig1016.245.1 ID=prot_P-lacustris_contig1016.245.1|Name=mRNA_P-lacustris_contig1016.245.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=132bp
MGPPPLPLPLPPLSPASPLPPPPMTQLPVPRSTEKGPDSPYQRRRACNSR
KESLSPAEPVRARAGAKTLLLEAIWGSGSPTRCSPPYPSRRFRTRICWSF
HKSAAETSGGSPAVCPPGQLRSPRRQYLLRNT back to topmRNA from alignment at P-lacustris_contig1016:67900..68322+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1016.245.1 ID=mRNA_P-lacustris_contig1016.245.1|Name=mRNA_P-lacustris_contig1016.245.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=423bp|location=Sequence derived from alignment at P-lacustris_contig1016:67900..68322+ (Pleurocladia lacustris SAG_25_93)
CTACACCGTGGTCTCCTCCGCCGCTACATGGGTCCGCCGCCGCTACCGCT
GCCCTTGCCGCCGCTGTCACCGGCGTCACCGCTGCCGCCTCCACCTATGA
CACAGCTGCCCGTCCCGCGGTCTACGGAAAAGGGGCCGGATTCACCATAC
CAAAGACGACGCGCCTGCAACTCGCGGAAGGAATCTCTTTCGCCCGCGGA
GCCGGTGCGCGCGCGAGCAGGAGCGAAGACGCTCCTTCTAGAAGCGATCT
GGGGATCCGGTTCACCGACCAGGTGTTCGCCGCCGTACCCCTCAAGACGA
TTTCGGACGCGAATTTGTTGGAGTTTCCACAAGAGTGCCGCGGAGACATC
TGGAGGTTCGCCAGCCGTTTGTCCGCCAGGGCAGCTCCGGAGTCCCAGGC
GTCAGTATCTCTTGAGGAATACG back to topCoding sequence (CDS) from alignment at P-lacustris_contig1016:67900..68322+ >mRNA_P-lacustris_contig1016.245.1 ID=mRNA_P-lacustris_contig1016.245.1|Name=mRNA_P-lacustris_contig1016.245.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=792bp|location=Sequence derived from alignment at P-lacustris_contig1016:67900..68322+ (Pleurocladia lacustris SAG_25_93)
ATGGGTCCGCCGCCGCTACCGCTGCCCTTGCCGCCGCTGTCACCGGCGTC
ACCGCTGCCGCCTCCACCTATGACACAGCTGCCCGTCCCGCGGTCTACGG
AAAAGGGGCCGGATTCACCATACCAAAGACGACGCGCCTGCAACTCGCGG
AAGGAATCTCTTTCGCCCGCGGAGCCGGTGCGCGCGCGAGCAGGAGCGAA
GACGCTCCTTCTAGAAGCGATCTGGGGATCCGGTTCACCGACCAGGTGTT
CGCCGCCGTACCCCTCAAGACGATTTCGGACGCGAATTTGTTGGAGTTTC
CACAAGAGTGCCGCGGAGACATCTGGAGGTTCGCCAGCCGTTTGTCCGCC
AGGGCAGCTCCGGAGTCCCAGGCGTCAGTATCTCTTGAGGAATACGATGG
GTCCGCCGCCGCTACCGCTGCCCTTGCCGCCGCTGTCACCGGCGTCACCG
CTGCCGCCTCCACCTATGACACAGCTGCCCGTCCCGCGGTCTACGGAAAA
GGGGCCGGATTCACCATACCAAAGACGACGCGCCTGCAACTCGCGGAAGG
AATCTCTTTCGCCCGCGGAGCCGGTGCGCGCGCGAGCAGGAGCGAAGACG
CTCCTTCTAGAAGCGATCTGGGGATCCGGTTCACCGACCAGGTGTTCGCC
GCCGTACCCCTCAAGACGATTTCGGACGCGAATTTGTTGGAGTTTCCACA
AGAGTGCCGCGGAGACATCTGGAGGTTCGCCAGCCGTTTGTCCGCCAGGG
CAGCTCCGGAGTCCCAGGCGTCAGTATCTCTTGAGGAATACG back to top
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