mRNA_P-lacustris_contig1015.234.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1015.234.1
Unique NamemRNA_P-lacustris_contig1015.234.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1015.234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1015contigP-lacustris_contig1015:16347..17107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.38246-CDS-P-lacustris_contig1015:16346..165411622815285.38246-CDS-P-lacustris_contig1015:16346..16541Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1015 16347..16541 -
1693493451.096806-CDS-P-lacustris_contig1015:16346..165411693493451.096806-CDS-P-lacustris_contig1015:16346..16541Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1015 16347..16541 -
1622815285.391421-CDS-P-lacustris_contig1015:17050..171071622815285.391421-CDS-P-lacustris_contig1015:17050..17107Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1015 17051..17107 -
1693493451.10621-CDS-P-lacustris_contig1015:17050..171071693493451.10621-CDS-P-lacustris_contig1015:17050..17107Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1015 17051..17107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1015.234.1prot_P-lacustris_contig1015.234.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1015 16347..17107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1015.234.1

>prot_P-lacustris_contig1015.234.1 ID=prot_P-lacustris_contig1015.234.1|Name=mRNA_P-lacustris_contig1015.234.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=84bp
MARVHPRLEKERLLQHQNMVKQRLDEGLSGGEAFKFLLRLVATHFDYEDR
GDALTKLNGFFVPTGTQFGEFLRQFRTAVTNITH
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mRNA from alignment at P-lacustris_contig1015:16347..17107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1015.234.1 ID=mRNA_P-lacustris_contig1015.234.1|Name=mRNA_P-lacustris_contig1015.234.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=761bp|location=Sequence derived from alignment at P-lacustris_contig1015:16347..17107- (Pleurocladia lacustris SAG_25_93)
ATGGCGAGAGTGCATCCGCGTCTGGAGAAGGAGAGGCTTCTCCAACATCA
GAACATGGTGAGACCATGTCCAGATTGATGAGCTCTCTTTGTTCCCCCCG
TCCCAAGCCTCGTAGGGTTCCCCTTTTGTCTTCCGTGGCAGACTCCAACC
GTGGTTGGATGTCGCGCAACAGTGTGTCGGTAGTACACAATGGTCTCCCC
TTTCGTCCCAGTTGGCTCGCACGCGTCAAGCAGAGTTGGAAGAGGCAGCG
AAGTTGGTCGAGATAGCTCGCGTTCGAGATATCGCCACCAACTACACGAA
AACCAAGTTGCGTGAGATTAAAATCCACCCCCGCATGCCATGGCAGCCAA
GCCTTAAGAACGCGGTGCCACAGCTCCTGAGACTCCATCTCTGCCGCGGT
CCTCGACATTTTGCAGCAAGCAGATCCGTTTATCGTGTTCGAGGACTCGG
ATAGTTGGTGTCGAGGATGGGAAAATCCTTTAAGGAAGGCGATGATTTCA
GCGGTTGTCACAGAGAAAGACACGACCGGAGAACTGATTTCCTCAATTAA
CGACATGTTCACGCAGGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTG
GCGAAGCCTTCAAGTTCCTCCTGCGGCTGGTGGCGACACATTTCGACTAC
GAGGATCGAGGCGATGCCTTGACAAAGTTGAATGGTTTTTTTGTGCCCAC
GGGAACGCAATTCGGAGAATTTTTGCGGCAGTTCAGAACGGCGGTGACAA
ACATCACCCAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1015:16347..17107-

>mRNA_P-lacustris_contig1015.234.1 ID=mRNA_P-lacustris_contig1015.234.1|Name=mRNA_P-lacustris_contig1015.234.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=504bp|location=Sequence derived from alignment at P-lacustris_contig1015:16347..17107- (Pleurocladia lacustris SAG_25_93)
ATGGCGAGAGTGCATCCGCGTCTGGAGAAGGAGAGGCTTCTCCAACATCA
GAACATGATGGCGAGAGTGCATCCGCGTCTGGAGAAGGAGAGGCTTCTCC
AACATCAGAACATGGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTGGC
GAAGCCTTCAAGTTCCTCCTGCGGCTGGTGGCGACACATTTCGACTACGA
GGATCGAGGCGATGCCTTGACAAAGTTGAATGGTTTTTTTGTGCCCACGG
GAACGCAATTCGGAGAATTTTTGCGGCAGTTCAGAACGGCGGTGACAAAC
ATCACCCACGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTGGCGAAGC
CTTCAAGTTCCTCCTGCGGCTGGTGGCGACACATTTCGACTACGAGGATC
GAGGCGATGCCTTGACAAAGTTGAATGGTTTTTTTGTGCCCACGGGAACG
CAATTCGGAGAATTTTTGCGGCAGTTCAGAACGGCGGTGACAAACATCAC
CCAC
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