mRNA_P-lacustris_contig1012.216.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1012.216.1
Unique NamemRNA_P-lacustris_contig1012.216.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1012.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1012contigP-lacustris_contig1012:19658..20158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1012.216.1prot_P-lacustris_contig1012.216.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1012 19729..20133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815282.4219532-UTR-P-lacustris_contig1012:19657..197281622815282.4219532-UTR-P-lacustris_contig1012:19657..19728Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1012 19658..19728 +
1693493449.1546159-UTR-P-lacustris_contig1012:19657..197281693493449.1546159-UTR-P-lacustris_contig1012:19657..19728Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1012 19658..19728 +
1622815282.4742408-UTR-P-lacustris_contig1012:20133..201581622815282.4742408-UTR-P-lacustris_contig1012:20133..20158Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1012 20134..20158 +
1693493449.1772387-UTR-P-lacustris_contig1012:20133..201581693493449.1772387-UTR-P-lacustris_contig1012:20133..20158Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1012 20134..20158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815282.4640627-CDS-P-lacustris_contig1012:19728..201331622815282.4640627-CDS-P-lacustris_contig1012:19728..20133Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1012 19729..20133 +
1693493449.16545-CDS-P-lacustris_contig1012:19728..201331693493449.16545-CDS-P-lacustris_contig1012:19728..20133Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1012 19729..20133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1012.216.1

>prot_P-lacustris_contig1012.216.1 ID=prot_P-lacustris_contig1012.216.1|Name=mRNA_P-lacustris_contig1012.216.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=135bp
MKINRTSHDVRQHTYSFCPPLKQKNIQHKHNISHHDPTEPEKRRSSPNRL
SEAKDPPARQNVKRQKSNSRIKTTRIAPRHHHNLKFPHSPKYEQTAGLPR
PQSKPPRQPLARCCPPPFARPRRQACVLPLVTFF*
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mRNA from alignment at P-lacustris_contig1012:19658..20158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1012.216.1 ID=mRNA_P-lacustris_contig1012.216.1|Name=mRNA_P-lacustris_contig1012.216.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=501bp|location=Sequence derived from alignment at P-lacustris_contig1012:19658..20158+ (Pleurocladia lacustris SAG_25_93)
CGCAAAACGTCGGGCTATTGGTTGTGTACCCTGAAACAATTCGTGGCCGC
ATTCTCACTTCAAGCACAAAAATGAAAATAAACCGCACATCACATGACGT
TCGACAACACACTTACAGCTTTTGCCCACCTCTGAAGCAGAAAAACATCC
AACACAAACATAACATTTCACATCACGACCCCACCGAGCCGGAAAAGCGC
CGATCAAGCCCGAACCGCCTGTCTGAGGCTAAAGATCCACCGGCACGGCA
GAATGTAAAGCGTCAAAAATCAAACTCCCGAATAAAAACTACGCGCATAG
CGCCGAGGCACCATCATAATCTAAAATTCCCACACTCTCCTAAGTATGAA
CAAACTGCCGGGTTGCCGCGACCCCAATCAAAACCTCCGCGCCAGCCACT
GGCGCGATGCTGCCCCCCTCCCTTCGCCCGCCCTCGCCGCCAAGCATGCG
TTCTGCCGTTGGTCACGTTCTTCTAGGGACCGCtCCCCCTGCCCTTTCCC
C
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Coding sequence (CDS) from alignment at P-lacustris_contig1012:19658..20158+

>mRNA_P-lacustris_contig1012.216.1 ID=mRNA_P-lacustris_contig1012.216.1|Name=mRNA_P-lacustris_contig1012.216.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=810bp|location=Sequence derived from alignment at P-lacustris_contig1012:19658..20158+ (Pleurocladia lacustris SAG_25_93)
ATGAAAATAAACCGCACATCACATGACGTTCGACAACACACTTACAGCTT
TTGCCCACCTCTGAAGCAGAAAAACATCCAACACAAACATAACATTTCAC
ATCACGACCCCACCGAGCCGGAAAAGCGCCGATCAAGCCCGAACCGCCTG
TCTGAGGCTAAAGATCCACCGGCACGGCAGAATGTAAAGCGTCAAAAATC
AAACTCCCGAATAAAAACTACGCGCATAGCGCCGAGGCACCATCATAATC
TAAAATTCCCACACTCTCCTAAGTATGAACAAACTGCCGGGTTGCCGCGA
CCCCAATCAAAACCTCCGCGCCAGCCACTGGCGCGATGCTGCCCCCCTCC
CTTCGCCCGCCCTCGCCGCCAAGCATGCGTTCTGCCGTTGGTCACGTTCT
TCTAGATGAAAATAAACCGCACATCACATGACGTTCGACAACACACTTAC
AGCTTTTGCCCACCTCTGAAGCAGAAAAACATCCAACACAAACATAACAT
TTCACATCACGACCCCACCGAGCCGGAAAAGCGCCGATCAAGCCCGAACC
GCCTGTCTGAGGCTAAAGATCCACCGGCACGGCAGAATGTAAAGCGTCAA
AAATCAAACTCCCGAATAAAAACTACGCGCATAGCGCCGAGGCACCATCA
TAATCTAAAATTCCCACACTCTCCTAAGTATGAACAAACTGCCGGGTTGC
CGCGACCCCAATCAAAACCTCCGCGCCAGCCACTGGCGCGATGCTGCCCC
CCTCCCTTCGCCCGCCCTCGCCGCCAAGCATGCGTTCTGCCGTTGGTCAC
GTTCTTCTAG
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