mRNA_P-lacustris_contig1010.205.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1010.205.1
Unique NamemRNA_P-lacustris_contig1010.205.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1010.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1010contigP-lacustris_contig1010:23047..23437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size391
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815280.5168366-UTR-P-lacustris_contig1010:23046..230741622815280.5168366-UTR-P-lacustris_contig1010:23046..23074Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1010 23047..23074 +
1693493447.6545498-UTR-P-lacustris_contig1010:23046..230741693493447.6545498-UTR-P-lacustris_contig1010:23046..23074Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1010 23047..23074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815280.5323212-CDS-P-lacustris_contig1010:23074..234371622815280.5323212-CDS-P-lacustris_contig1010:23074..23437Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1010 23075..23437 +
1693493447.6641037-CDS-P-lacustris_contig1010:23074..234371693493447.6641037-CDS-P-lacustris_contig1010:23074..23437Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1010 23075..23437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1010.205.1prot_P-lacustris_contig1010.205.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1010 23075..23437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1010.205.1

>prot_P-lacustris_contig1010.205.1 ID=prot_P-lacustris_contig1010.205.1|Name=mRNA_P-lacustris_contig1010.205.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=121bp
MINFGTVAVPDMSETLCDAFTSWCCVTATPMAFSHKCMKGTSNRVVRVVN
AIPSIRYWTFCTHPTWNCKTVHWIEASDTGVMINAMVADMGVRMAFVPTE
KVAAQKDGALAAANRVRDIAD
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mRNA from alignment at P-lacustris_contig1010:23047..23437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1010.205.1 ID=mRNA_P-lacustris_contig1010.205.1|Name=mRNA_P-lacustris_contig1010.205.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=391bp|location=Sequence derived from alignment at P-lacustris_contig1010:23047..23437+ (Pleurocladia lacustris SAG_25_93)
CTGAAAATTGGAGAAGAGTCTGTGTACCATGATCAACTTCGGCACTGTGG
CAGTGCCTGATATGTCTGAGACGCTCTGCGATGCATTCACTTCCTGGTGT
TGCGTGACGGCGACTCCTATGGCATTCTCCCACAAGTGTATGAAAGGAAC
TTCGAACAGGGTGGTCCGTGTAGTCAACGCCATCCCTTCGATTAGGTACT
GGACATTCTGCACGCACCCGACATGGAACTGCAAGACGGTGCACTGGATA
GAAGCTTCTGACACTGGCGTCATGATCAACGCCATGGTAGCGGATATGGG
TGTTCGCATGGCGTTTGTTCCTACGGAGAAAGTCGCCGCCCAGAAGGATG
GGGCACTCGCCGCCGCCAACAGGGTGCGCGACATTGCGGAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1010:23047..23437+

>mRNA_P-lacustris_contig1010.205.1 ID=mRNA_P-lacustris_contig1010.205.1|Name=mRNA_P-lacustris_contig1010.205.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=726bp|location=Sequence derived from alignment at P-lacustris_contig1010:23047..23437+ (Pleurocladia lacustris SAG_25_93)
ATGATCAACTTCGGCACTGTGGCAGTGCCTGATATGTCTGAGACGCTCTG
CGATGCATTCACTTCCTGGTGTTGCGTGACGGCGACTCCTATGGCATTCT
CCCACAAGTGTATGAAAGGAACTTCGAACAGGGTGGTCCGTGTAGTCAAC
GCCATCCCTTCGATTAGGTACTGGACATTCTGCACGCACCCGACATGGAA
CTGCAAGACGGTGCACTGGATAGAAGCTTCTGACACTGGCGTCATGATCA
ACGCCATGGTAGCGGATATGGGTGTTCGCATGGCGTTTGTTCCTACGGAG
AAAGTCGCCGCCCAGAAGGATGGGGCACTCGCCGCCGCCAACAGGGTGCG
CGACATTGCGGACATGATCAACTTCGGCACTGTGGCAGTGCCTGATATGT
CTGAGACGCTCTGCGATGCATTCACTTCCTGGTGTTGCGTGACGGCGACT
CCTATGGCATTCTCCCACAAGTGTATGAAAGGAACTTCGAACAGGGTGGT
CCGTGTAGTCAACGCCATCCCTTCGATTAGGTACTGGACATTCTGCACGC
ACCCGACATGGAACTGCAAGACGGTGCACTGGATAGAAGCTTCTGACACT
GGCGTCATGATCAACGCCATGGTAGCGGATATGGGTGTTCGCATGGCGTT
TGTTCCTACGGAGAAAGTCGCCGCCCAGAAGGATGGGGCACTCGCCGCCG
CCAACAGGGTGCGCGACATTGCGGAC
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