Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 391 |
| Cds size | 363 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815280.5168366-UTR-P-lacustris_contig1010:23046..23074 | 1622815280.5168366-UTR-P-lacustris_contig1010:23046..23074 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1010 23047..23074 + |
| 1693493447.6545498-UTR-P-lacustris_contig1010:23046..23074 | 1693493447.6545498-UTR-P-lacustris_contig1010:23046..23074 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1010 23047..23074 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815280.5323212-CDS-P-lacustris_contig1010:23074..23437 | 1622815280.5323212-CDS-P-lacustris_contig1010:23074..23437 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1010 23075..23437 + |
| 1693493447.6641037-CDS-P-lacustris_contig1010:23074..23437 | 1693493447.6641037-CDS-P-lacustris_contig1010:23074..23437 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1010 23075..23437 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1010.205.1 >prot_P-lacustris_contig1010.205.1 ID=prot_P-lacustris_contig1010.205.1|Name=mRNA_P-lacustris_contig1010.205.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=121bp
MINFGTVAVPDMSETLCDAFTSWCCVTATPMAFSHKCMKGTSNRVVRVVN
AIPSIRYWTFCTHPTWNCKTVHWIEASDTGVMINAMVADMGVRMAFVPTE
KVAAQKDGALAAANRVRDIAD back to topmRNA from alignment at P-lacustris_contig1010:23047..23437+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1010.205.1 ID=mRNA_P-lacustris_contig1010.205.1|Name=mRNA_P-lacustris_contig1010.205.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=391bp|location=Sequence derived from alignment at P-lacustris_contig1010:23047..23437+ (Pleurocladia lacustris SAG_25_93)
CTGAAAATTGGAGAAGAGTCTGTGTACCATGATCAACTTCGGCACTGTGG
CAGTGCCTGATATGTCTGAGACGCTCTGCGATGCATTCACTTCCTGGTGT
TGCGTGACGGCGACTCCTATGGCATTCTCCCACAAGTGTATGAAAGGAAC
TTCGAACAGGGTGGTCCGTGTAGTCAACGCCATCCCTTCGATTAGGTACT
GGACATTCTGCACGCACCCGACATGGAACTGCAAGACGGTGCACTGGATA
GAAGCTTCTGACACTGGCGTCATGATCAACGCCATGGTAGCGGATATGGG
TGTTCGCATGGCGTTTGTTCCTACGGAGAAAGTCGCCGCCCAGAAGGATG
GGGCACTCGCCGCCGCCAACAGGGTGCGCGACATTGCGGAC back to topCoding sequence (CDS) from alignment at P-lacustris_contig1010:23047..23437+ >mRNA_P-lacustris_contig1010.205.1 ID=mRNA_P-lacustris_contig1010.205.1|Name=mRNA_P-lacustris_contig1010.205.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=726bp|location=Sequence derived from alignment at P-lacustris_contig1010:23047..23437+ (Pleurocladia lacustris SAG_25_93)
ATGATCAACTTCGGCACTGTGGCAGTGCCTGATATGTCTGAGACGCTCTG
CGATGCATTCACTTCCTGGTGTTGCGTGACGGCGACTCCTATGGCATTCT
CCCACAAGTGTATGAAAGGAACTTCGAACAGGGTGGTCCGTGTAGTCAAC
GCCATCCCTTCGATTAGGTACTGGACATTCTGCACGCACCCGACATGGAA
CTGCAAGACGGTGCACTGGATAGAAGCTTCTGACACTGGCGTCATGATCA
ACGCCATGGTAGCGGATATGGGTGTTCGCATGGCGTTTGTTCCTACGGAG
AAAGTCGCCGCCCAGAAGGATGGGGCACTCGCCGCCGCCAACAGGGTGCG
CGACATTGCGGACATGATCAACTTCGGCACTGTGGCAGTGCCTGATATGT
CTGAGACGCTCTGCGATGCATTCACTTCCTGGTGTTGCGTGACGGCGACT
CCTATGGCATTCTCCCACAAGTGTATGAAAGGAACTTCGAACAGGGTGGT
CCGTGTAGTCAACGCCATCCCTTCGATTAGGTACTGGACATTCTGCACGC
ACCCGACATGGAACTGCAAGACGGTGCACTGGATAGAAGCTTCTGACACT
GGCGTCATGATCAACGCCATGGTAGCGGATATGGGTGTTCGCATGGCGTT
TGTTCCTACGGAGAAAGTCGCCGCCCAGAAGGATGGGGCACTCGCCGCCG
CCAACAGGGTGCGCGACATTGCGGAC back to top
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