mRNA_P-lacustris_contig101.202.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig101.202.1
Unique NamemRNA_P-lacustris_contig101.202.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig101.202.1 vs. uniprot
Match: D7G1S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S5_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.050e-70
Identity = 100/112 (89.29%), Postives = 105/112 (93.75%), Query Frame = 1 
Query:    1 GRFQPTPVREKPRPEVSFDKGGSDFRCPRTFSCFGKQALSRDIYHSAGRPVFTRQDRWYVPGDKFKAHGGTPISSLGNQPTSKRTSAGRTHFGTSTRSSAMKMYAIWSVGQQ 336
            GR QPT VR+KPRPEVSFDKGGSDFRCPRTFSC G+QALSRD+Y SAGRPVFTRQDRWYVPGDKF+ HGGTPISSLGNQPTS RTSAGR HFGTSTRSSAMKMYA+WSVGQQ
Sbjct:    2 GRLQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWYVPGDKFRVHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAMKMYALWSVGQQ 113
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BLAST of mRNA_P-lacustris_contig101.202.1 vs. uniprot
Match: A0A6H5K9L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L3_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 3.850e-70
Identity = 100/112 (89.29%), Postives = 106/112 (94.64%), Query Frame = 1 
Query:    1 GRFQPTPVREKPRPEVSFDKGGSDFRCPRTFSCFGKQALSRDIYHSAGRPVFTRQDRWYVPGDKFKAHGGTPISSLGNQPTSKRTSAGRTHFGTSTRSSAMKMYAIWSVGQQ 336
            GRFQPT VR+KPRPEVSFDKGGSDFRCPRTFSC G+QALSRD+Y SAGRPVFTRQDRW+VPGDKF+AHGGTPISSLGNQPTS RTSAGR HFGTSTRSSA KMYA+WSVGQQ
Sbjct:   31 GRFQPTVVRQKPRPEVSFDKGGSDFRCPRTFSCLGQQALSRDVYRSAGRPVFTRQDRWHVPGDKFRAHGGTPISSLGNQPTSTRTSAGRAHFGTSTRSSAKKMYALWSVGQQ 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1S5_ECTSI1.050e-7089.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9L3_9PHAE3.850e-7089.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig101contigP-lacustris_contig101:230940..232003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004330.1
Exons2
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815280.160831-CDS-P-lacustris_contig101:230939..2311381622815280.160831-CDS-P-lacustris_contig101:230939..231138Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 230940..231138 +
1693493447.3529768-CDS-P-lacustris_contig101:230939..2311381693493447.3529768-CDS-P-lacustris_contig101:230939..231138Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 230940..231138 +
1622815280.2187622-CDS-P-lacustris_contig101:231860..2320031622815280.2187622-CDS-P-lacustris_contig101:231860..232003Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 231861..232003 +
1693493447.3650775-CDS-P-lacustris_contig101:231860..2320031693493447.3650775-CDS-P-lacustris_contig101:231860..232003Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 231861..232003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig101.202.1prot_P-lacustris_contig101.202.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig101 230940..232003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig101.202.1

>prot_P-lacustris_contig101.202.1 ID=prot_P-lacustris_contig101.202.1|Name=mRNA_P-lacustris_contig101.202.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=114bp
GRFQPTPVREKPRPEVSFDKGGSDFRCPRTFSCFGKQALSRDIYHSAGRP
VFTRQDRWYVPGDKFKAHGGTPISSLGNQPTSKRTSAGRTHFGTSTRSSA
MKMYAIWSVGQQG*
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mRNA from alignment at P-lacustris_contig101:230940..232003+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig101.202.1 ID=mRNA_P-lacustris_contig101.202.1|Name=mRNA_P-lacustris_contig101.202.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1064bp|location=Sequence derived from alignment at P-lacustris_contig101:230940..232003+ (Pleurocladia lacustris SAG_25_93)
GGTCGGTTTCAACCTACGCCCGTACGTGAGAAGCCTCGCCCCGAGGTATC
CTTCGACAAGGGTGGCAGCGATTTTCGCTGCCCAAGGACGTTCAGCTGCT
TTGGCAAGCAAGCTTTGTCTAGAGATATCTATCACTCTGCCGGAAGACCG
GTATTCACGCGGCAGGACAGATGGTACGTCCCTGGGGACAAATTCAAAGG
TGATATATTGAGCCGAATCTGCTCAAGTTCAACGACGTTTCATCTACAAC
AAGACAAACATTTCTTAGTTTAATGTCGTGGCACTCCAGATCCTGTGGCA
TTTTCGCGTCCTCTCAATCGGAACGGCTAGGTACAGGGTTCTGTGTTGGA
AATATAGGCTGATGTGGCCACTATCCGTCGATATTGTGCAGGGGTAAGGT
GCTCAGAGTGACTGTAAAGTACGCATGTGGAGACCAGGAAAAATAACGGT
TTGAAGTGGCGCTTATGTGGCCAAGATAGGAAGTGAAGGGACTAGAGACT
TTCTCTACAAAAGGCCGAGGGTCTGCAAGAACCTGTCCCAGGAAAGGGAG
CGGTGAAAGACAGAGAGAGTGAGAAAGTGGGGGCGATCTTCACGGGGGCG
AGCCGATCATCCTCATCTCGGGGAGAAACACACACGGGCTATCGTACTTT
CTTTACCGATCACGGTAGAAGGCGGATATATATTATATCCCGACCTTTAT
CAACGGTACTAGAATCTCCAAAAGGATCCTTGAATTTTCAATCGGTGATA
GACCGATGTCGTGCTTGCTTCGGTCGTAAACCGAGAATATTTAGATGGCC
AAAGAAAGCCCAGATGATGACAATATCTTCTCTTCGTTTCCGCCTCCCGA
TCTCCGCCCCCGTTACAAACGATCCTTCCTTGCCTTTTGTGCGACAAAAA
CAATGGGTTATCGTCACACAGCGCACGGGGGCACGCCGATCTCGTCACTA
GGCAACCAGCCGACCTCCAAGAGGACCTCGGCCGGCCGAACACATTTCGG
TACTTCTACGAGGAGCAGTGCCATGAAGATGTACGCGATATGGTCGGTTG
GCCAGCAGGGATGA
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Coding sequence (CDS) from alignment at P-lacustris_contig101:230940..232003+

>mRNA_P-lacustris_contig101.202.1 ID=mRNA_P-lacustris_contig101.202.1|Name=mRNA_P-lacustris_contig101.202.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=684bp|location=Sequence derived from alignment at P-lacustris_contig101:230940..232003+ (Pleurocladia lacustris SAG_25_93)
GGTCGGTTTCAACCTACGCCCGTACGTGAGAAGCCTCGCCCCGAGGTATC
CTTCGACAAGGGTGGCAGCGATTTTCGCTGCCCAAGGACGTTCAGCTGCT
TTGGCAAGCAAGCTTTGTCTAGAGATATCTATCACTCTGCCGGAAGACCG
GTATTCACGCGGCAGGACAGATGGTACGTCCCTGGGGACAAATTCAAAGG
GTCGGTTTCAACCTACGCCCGTACGTGAGAAGCCTCGCCCCGAGGTATCC
TTCGACAAGGGTGGCAGCGATTTTCGCTGCCCAAGGACGTTCAGCTGCTT
TGGCAAGCAAGCTTTGTCTAGAGATATCTATCACTCTGCCGGAAGACCGG
TATTCACGCGGCAGGACAGATGGTACGTCCCTGGGGACAAATTCAAAGCG
CACGGGGGCACGCCGATCTCGTCACTAGGCAACCAGCCGACCTCCAAGAG
GACCTCGGCCGGCCGAACACATTTCGGTACTTCTACGAGGAGCAGTGCCA
TGAAGATGTACGCGATATGGTCGGTTGGCCAGCAGGGATGACGCACGGGG
GCACGCCGATCTCGTCACTAGGCAACCAGCCGACCTCCAAGAGGACCTCG
GCCGGCCGAACACATTTCGGTACTTCTACGAGGAGCAGTGCCATGAAGAT
GTACGCGATATGGTCGGTTGGCCAGCAGGGATGA
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