mRNA_P-lacustris_contig101.200.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig101.200.1
Unique NamemRNA_P-lacustris_contig101.200.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig101.200.1 vs. uniprot
Match: D7G1S7_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S7_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 5.310e-43
Identity = 144/319 (45.14%), Postives = 173/319 (54.23%), Query Frame = 1 
Query:    1 MLERRLDGGYQVFAPEIAQD-PRREPTRVVARTHERPRGPSLPKWDRRGNAAARRPLXXXXXXXXXXXA-WDSVDSGSTPQPWNCQACTYLNEDPAYRSACEMCSTLREWD--NSTGSGNSAKGGRVAPATAAPTSMPSFSPTASAGGAPXXXXXXXXXXX----------------------------------------IEACIPGEIAARGDGDVAGFSG----LDDTNNMAGGILGGVSPGGGAFPVASAAGRAASANGNGATAQNGHT-GIDWEAGEGWQGYGSASFGDDSPRRCSPRHA--AFGFPFGSTQGG 804
            MLERR+DGGYQ+F+PEI +D P      VVART+ERPRG SLPKWDR  +A + RP  XXXXXXX   +    + SG + QPWNC ACTYLNEDPA+R+ACE+C+T R     ++ G+G S  GG                   S G   XXXXXXXXXXX                                        IEACIP   +  G G+  G       +DD  N   GILGGVSPGGGAFPV S A +AAS +   ATA +    G  WEAG+ WQG+GS SFG +SP  CS R    AF F FG+++ G
Sbjct:    1 MLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRTDDAVSTRPAPXXXXXXXRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSAAADAVGTGTSGDGGEQRH-----DDWDDSEVLKSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPPQIEACIPSGFSV-GGGEAGGLPXXXXXVDD--NEVDGILGGVSPGGGAFPVVSGAYQAASGHCGSATAASAAALGGGWEAGDEWQGFGSGSFGQESPVNCSSRQPTKAFEFAFGNSEAG 311
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BLAST of mRNA_P-lacustris_contig101.200.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 6.770e-40
Identity = 129/320 (40.31%), Postives = 156/320 (48.75%), Query Frame = 1 
Query:    1 MLERRLDGGYQVFAPEIAQD-PRREPTRVVARTHERPRGPSLPKWDRRGNAAARRPLXXXXXXXXXXXAWDSVDSGSTPQPWNCQACTYLNEDPAYRSACEMCSTLRE------------------------------WDNSTGSGNSAKGGRVAPATAAPTSMPSFSPTASAGGAPXXXXXXXXXXXIEACIPGEIAARGDGDVAGF--SGLDDTNNMAGGILGGVSPGGGAFPVASAAGRAASANGNGATAQNGHT-GIDWEAGEGWQGYGSASFGDDSPRRCSPRHAAFGFPFG---STQGGCGXXXXXXXEDDGNG 849
            MLERR+DGGYQ+F+PEI +D P      VVART+ERPRG SLPKWDR  +A + RPL               V SG + QPWNC ACTYLNEDPA+R+ACE+C+T R                                                                      XXXXXXX    IEACIP   +  G G+  G    G++  +N   GILGG+SPGGGAFPV S+  +A S +   ATA +    G  WEAG+ WQG+GS SFG +SP +CSPR  A  F F    S  GG G        +DG G
Sbjct:  819 MLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRSDDAVSTRPLPPPPPRPASKLGL--VGSGFSHQPWNCPACTYLNEDPAFRAACEICNTPRPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPQIEACIPSGFSV-GGGEAGGLPVGGIEVEDNEVDGILGGISPGGGAFPVVSSTDQAESRHCGSATAASAAALGGSWEAGDEWQGFGSGSFGQESPVKCSPRQPATAFEFSFRNSEAGGGGVDDGAGDGNDGRG 1135
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1S7_ECTSI5.310e-4345.14RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBW0_9PHAE6.770e-4040.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig101contigP-lacustris_contig101:217307..218877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size861
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig101.200.1prot_P-lacustris_contig101.200.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig101 217307..218877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815279.5696974-CDS-P-lacustris_contig101:217306..2173541622815279.5696974-CDS-P-lacustris_contig101:217306..217354Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 217307..217354 +
1693493447.2046552-CDS-P-lacustris_contig101:217306..2173541693493447.2046552-CDS-P-lacustris_contig101:217306..217354Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 217307..217354 +
1622815279.5809212-CDS-P-lacustris_contig101:217562..2177511622815279.5809212-CDS-P-lacustris_contig101:217562..217751Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 217563..217751 +
1693493447.2143703-CDS-P-lacustris_contig101:217562..2177511693493447.2143703-CDS-P-lacustris_contig101:217562..217751Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 217563..217751 +
1622815279.8330154-CDS-P-lacustris_contig101:218253..2188771622815279.8330154-CDS-P-lacustris_contig101:218253..218877Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 218254..218877 +
1693493447.2233946-CDS-P-lacustris_contig101:218253..2188771693493447.2233946-CDS-P-lacustris_contig101:218253..218877Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 218254..218877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig101.200.1

>prot_P-lacustris_contig101.200.1 ID=prot_P-lacustris_contig101.200.1|Name=mRNA_P-lacustris_contig101.200.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=287bp
MLERRLDGGYQVFAPEIAQDPRREPTRVVARTHERPRGPSLPKWDRRGNA
AARRPLPPPPPRPPPPPAWDSVDSGSTPQPWNCQACTYLNEDPAYRSACE
MCSTLREWDNSTGSGNSAKGGRVAPATAAPTSMPSFSPTASAGGAPFSPV
AGAATPPIEACIPGEIAARGDGDVAGFSGLDDTNNMAGGILGGVSPGGGA
FPVASAAGRAASANGNGATAQNGHTGIDWEAGEGWQGYGSASFGDDSPRR
CSPRHAAFGFPFGSTQGGCGGGGGAGGEDDGNGSYG*
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mRNA from alignment at P-lacustris_contig101:217307..218877+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig101.200.1 ID=mRNA_P-lacustris_contig101.200.1|Name=mRNA_P-lacustris_contig101.200.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1571bp|location=Sequence derived from alignment at P-lacustris_contig101:217307..218877+ (Pleurocladia lacustris SAG_25_93)
ATGCTGGAGCGTCGGCTGGACGGCGGTTATCAGGTTTTCGCCCCAGAGGT
GGGTGCTCGCATCCTACGTGCCGTTGTGATTTTTGGGTAGGTTCGGTGCT
GCTGATTGACGCGAACAACACGCCCGGGTGGTGCCCTTGTCTTTGCAGCG
GGACCACGAGTCGTCACATGAAACACGCCCTCTCCCTACCTTGTGGGCGT
CGTGAAAACACCACCCTCGCTCCCGATGTATTCTGACCTTTCGCCGGCCT
TCGAAGATTGCTCAAGATCCTCGGCGCGAACCTACGCGCGTCGTCGCACG
CACCCACGAGCGCCCACGCGGCCCTTCTTTGCCCAAGTGGGACCGCCGCG
GAAACGCTGCTGCTAGGAGGCCGCTTCCGCCTCCGCCGCCGCGGCCGCCC
CCTCCGCCGGCGTGGGATTCGGTAGATAGCGGGTCTACGCCGCAGGTACG
TTAGTTGCGTGCGCTTTTGTTTTTTCGCCAGGTCGCTGGCACTGGTGGGC
GCATTTGCTGTATTTTATCTGTTGTCGAAATCGTCCGATTTGTTCCTTCT
TTATACATTCGAAGCCCCTGAGTGTACCATTGCAACTGCGTGGCGGTTAT
GAGGCCATAGATCCACCGCAACGGAAGGGTTTTGAAGTGTCGTGTCGCTG
TGTATTTTGCAAATCGGGCGGAGAAGCATGGTTGACGCAGCTTCTTACCG
ACGAAGAGCCCCGTTGCTGGGTCGATCTACCTGGTACTGTGTACGGTCAC
ACCGGTACCAGCGCCGGACAGTTGTTCTGGATGGACCCAGTTCAAATCCT
CGAGGTGTAGCGTACGTCTCTGCGATTGTGCTTTTCGACAGAGTCCGAGC
CGATTTCGCCCCGGTCTGCCTCCACCCCACCCCTCTCCACTTGTTGCCGC
GAACCCCCTCATCCTTCCTTCGCCTGGCGAAACTTCAATACACCCAGCCA
TGGAACTGCCAAGCGTGTACGTACTTGAACGAGGATCCCGCATATCGCTC
CGCCTGTGAGATGTGCAGCACGCTCCGCGAGTGGGACAACTCCACGGGAA
GCGGTAACTCCGCGAAGGGAGGGAGAGTAGCACCGGCGACAGCGGCTCCG
ACTTCGATGCCTTCGTTCTCACCAACAGCGTCAGCGGGAGGGGCGCCGTT
CTCCCCCGTCGCCGGGGCTGCGACGCCTCCGATAGAAGCATGCATCCCCG
GCGAAATCGCTGCCCGTGGAGATGGCGATGTGGCCGGCTTCAGCGGACTC
GATGACACCAACAACATGGCGGGCGGGATTCTTGGAGGCGTTTCTCCAGG
GGGCGGTGCTTTTCCGGTCGCTTCTGCCGCTGGCCGGGCCGCAAGCGCAA
ACGGCAATGGTGCCACCGCCCAAAACGGACACACCGGCATCGATTGGGAA
GCGGGGGAGGGATGGCAAGGATACGGGAGCGCGTCCTTCGGGGATGATTC
TCCGCGCAGGTGCTCACCTCGGCACGCGGCGTTCGGCTTTCCCTTTGGAA
GCACGCAGGGTGGTTGCGGCGGTGGAGGTGGCGCTGGCGGCGAGGATGAT
GGTAACGGGAGCTATGGCTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig101:217307..218877+

>mRNA_P-lacustris_contig101.200.1 ID=mRNA_P-lacustris_contig101.200.1|Name=mRNA_P-lacustris_contig101.200.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1722bp|location=Sequence derived from alignment at P-lacustris_contig101:217307..218877+ (Pleurocladia lacustris SAG_25_93)
ATGCTGGAGCGTCGGCTGGACGGCGGTTATCAGGTTTTCGCCCCAGAGAT
GCTGGAGCGTCGGCTGGACGGCGGTTATCAGGTTTTCGCCCCAGAGATTG
CTCAAGATCCTCGGCGCGAACCTACGCGCGTCGTCGCACGCACCCACGAG
CGCCCACGCGGCCCTTCTTTGCCCAAGTGGGACCGCCGCGGAAACGCTGC
TGCTAGGAGGCCGCTTCCGCCTCCGCCGCCGCGGCCGCCCCCTCCGCCGG
CGTGGGATTCGGTAGATAGCGGGTCTACGCCGCAGATTGCTCAAGATCCT
CGGCGCGAACCTACGCGCGTCGTCGCACGCACCCACGAGCGCCCACGCGG
CCCTTCTTTGCCCAAGTGGGACCGCCGCGGAAACGCTGCTGCTAGGAGGC
CGCTTCCGCCTCCGCCGCCGCGGCCGCCCCCTCCGCCGGCGTGGGATTCG
GTAGATAGCGGGTCTACGCCGCAGCCATGGAACTGCCAAGCGTGTACGTA
CTTGAACGAGGATCCCGCATATCGCTCCGCCTGTGAGATGTGCAGCACGC
TCCGCGAGTGGGACAACTCCACGGGAAGCGGTAACTCCGCGAAGGGAGGG
AGAGTAGCACCGGCGACAGCGGCTCCGACTTCGATGCCTTCGTTCTCACC
AACAGCGTCAGCGGGAGGGGCGCCGTTCTCCCCCGTCGCCGGGGCTGCGA
CGCCTCCGATAGAAGCATGCATCCCCGGCGAAATCGCTGCCCGTGGAGAT
GGCGATGTGGCCGGCTTCAGCGGACTCGATGACACCAACAACATGGCGGG
CGGGATTCTTGGAGGCGTTTCTCCAGGGGGCGGTGCTTTTCCGGTCGCTT
CTGCCGCTGGCCGGGCCGCAAGCGCAAACGGCAATGGTGCCACCGCCCAA
AACGGACACACCGGCATCGATTGGGAAGCGGGGGAGGGATGGCAAGGATA
CGGGAGCGCGTCCTTCGGGGATGATTCTCCGCGCAGGTGCTCACCTCGGC
ACGCGGCGTTCGGCTTTCCCTTTGGAAGCACGCAGGGTGGTTGCGGCGGT
GGAGGTGGCGCTGGCGGCGAGGATGATGGTAACGGGAGCTATGGCTGACC
ATGGAACTGCCAAGCGTGTACGTACTTGAACGAGGATCCCGCATATCGCT
CCGCCTGTGAGATGTGCAGCACGCTCCGCGAGTGGGACAACTCCACGGGA
AGCGGTAACTCCGCGAAGGGAGGGAGAGTAGCACCGGCGACAGCGGCTCC
GACTTCGATGCCTTCGTTCTCACCAACAGCGTCAGCGGGAGGGGCGCCGT
TCTCCCCCGTCGCCGGGGCTGCGACGCCTCCGATAGAAGCATGCATCCCC
GGCGAAATCGCTGCCCGTGGAGATGGCGATGTGGCCGGCTTCAGCGGACT
CGATGACACCAACAACATGGCGGGCGGGATTCTTGGAGGCGTTTCTCCAG
GGGGCGGTGCTTTTCCGGTCGCTTCTGCCGCTGGCCGGGCCGCAAGCGCA
AACGGCAATGGTGCCACCGCCCAAAACGGACACACCGGCATCGATTGGGA
AGCGGGGGAGGGATGGCAAGGATACGGGAGCGCGTCCTTCGGGGATGATT
CTCCGCGCAGGTGCTCACCTCGGCACGCGGCGTTCGGCTTTCCCTTTGGA
AGCACGCAGGGTGGTTGCGGCGGTGGAGGTGGCGCTGGCGGCGAGGATGA
TGGTAACGGGAGCTATGGCTGA
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