mRNA_P-lacustris_contig101.182.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig101.182.1
Unique NamemRNA_P-lacustris_contig101.182.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig101.182.1 vs. uniprot
Match: D7G1T7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T7_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 1.030e-101
Identity = 208/366 (56.83%), Postives = 230/366 (62.84%), Query Frame = 1 
Query:    1 GLTPALRQLKGCRHTLRSSDGNIKSSSFGAPR--RGCLTCNLAARVMKDVDKEQRAAQDLLRQEQGKRELVWARTRRDVLLMRHPTNWAGCSLLQGPRLQRSTELE-QVEAGTREVNINLAHIREKRGEGIAERMGGDSRPKLTPGAILTLSQRAAEAIAAFAKEVLGENDPTQRAKKAARIVAEATSEVAFVSRRHHPRTELLVTKLQATTRGWLARRLARVLLLRGGCRRELDVASGAWLYVWNYRAAVSDAPTGATAA--RRVYTGG----AYPSPV-DADGGEGLFRSWYPPALLKNEILPSPRAAARRADGEERKREARLALANSWLGDQRAKLDERDARSASLLELAEVVDLVERATVSL 1068
            GLTPALRQLK CRHT  SS  + + S  GAPR  +GCLTCN                                                      GPR +R TELE   E GT +    L  I E    G  ER GGDSRPKL PGA+LT S  A  A+ AFA+EVL E DP +RA KAA IV EAT+EV+F +RR+HPRTE+LVT+LQA  RGWLARRLARVLLLRGGCRRELDVASGAW YVW++RAAV  AP  A  A  R  Y GG     Y SP    DGGEGLFR+WYPPALLKNE LPSPRAAARR +GE RKREARLALANS L DQRA+L+ RDAR+A LL L EVV LVERA  SL
Sbjct:    9 GLTPALRQLKDCRHTFPSSKWDTRDSQ-GAPRHGQGCLTCN------------------------------------------------------GPRPERPTELEPNNETGTGDFGAILNGIEEG---GRVERCGGDSRPKLVPGAMLTFSNTAVAAVKAFAEEVLAEEDPPRRATKAAAIVKEATTEVSFANRRNHPRTEVLVTRLQAVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPGAAATAPGRASYAGGIGGGGYRSPACGGDGGEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASL 316
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BLAST of mRNA_P-lacustris_contig101.182.1 vs. uniprot
Match: A0A6H5KM98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM98_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 1.130e-99
Identity = 206/367 (56.13%), Postives = 229/367 (62.40%), Query Frame = 1 
Query:    1 GLTPALRQLKGCRHTLRSSDGNIKSSSFGAPR--RGCLTCNLAARVMKDVDKEQRAAQDLLRQEQGKRELVWARTRRDVLLMRHPTNWAGCSLLQGPRLQRSTELE-QVEAGTREVNINLAHIREKRGEGIAERMGGDSRPKLTPGAILTLSQRAAEAIAAFAKEVLGENDPTQRAKKAARIVAEATSEVAFVSRRHHPRTELLVTKLQATTRGWLARRLARVLLLRGGCRRELDVASGAWLYVWNYRAAVSDAPTGATAA--RRVYTGGA-----YPSPVDADGG-EGLFRSWYPPALLKNEILPSPRAAARRADGEERKREARLALANSWLGDQRAKLDERDARSASLLELAEVVDLVERATVSL 1068
            GLTPALRQLK C+HT  SS  + + S  GAPR  +GCLTCN+                                        RH           GPR +R  ELE   E GT + +  L  I    G G  ER GGDSRPKL PGA+LTLS  A  A+ AFA+EVL E +P QRAKKA  IV EAT+EVAF +RR+HPRT +LV    A  RGWLARRLARVLLLRGGCRRELDVASGAW YVW++RAAV  APT ATA   R  Y GG      Y SPV      EGLFR+WYPPALLKNE LPSPRAAARR +GE RKREARLALANS L DQRA+L+ RDAR+A LL L EVV LVERA  SL
Sbjct:    9 GLTPALRQLKDCQHTFPSSQWDTRDSQ-GAPRHGQGCLTCNV----------------------------------------RH-----------GPRPERPRELEPNNETGTGDFDAILNGIE---GGGQVERRGGDSRPKLVPGAMLTLSNTAVAAVKAFAEEVLAEENPAQRAKKALAIVKEATTEVAFANRRNHPRTGVLV----AVVRGWLARRLARVLLLRGGCRRELDVASGAWQYVWSHRAAVPGAPT-ATAGPGRASYAGGGSGGXXYRSPVXXXXXXEGLFRTWYPPALLKNESLPSPRAAARRVEGEGRKREARLALANSLLDDQRAELNRRDARAARLLALVEVVKLVERAMASL 315
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1T7_ECTSI1.030e-10156.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM98_9PHAE1.130e-9956.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig101contigP-lacustris_contig101:43479..46330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1107
Cds size1107
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.4881487-CDS-P-lacustris_contig101:43478..436061622815277.4881487-CDS-P-lacustris_contig101:43478..43606Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 43479..43606 -
1693493445.6392272-CDS-P-lacustris_contig101:43478..436061693493445.6392272-CDS-P-lacustris_contig101:43478..43606Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 43479..43606 -
1622815277.50043-CDS-P-lacustris_contig101:43876..442491622815277.50043-CDS-P-lacustris_contig101:43876..44249Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 43877..44249 -
1693493445.6586668-CDS-P-lacustris_contig101:43876..442491693493445.6586668-CDS-P-lacustris_contig101:43876..44249Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 43877..44249 -
1622815277.5091326-CDS-P-lacustris_contig101:44682..448021622815277.5091326-CDS-P-lacustris_contig101:44682..44802Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 44683..44802 -
1693493445.670447-CDS-P-lacustris_contig101:44682..448021693493445.670447-CDS-P-lacustris_contig101:44682..44802Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 44683..44802 -
1622815277.5176845-CDS-P-lacustris_contig101:45062..451531622815277.5176845-CDS-P-lacustris_contig101:45062..45153Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 45063..45153 -
1693493445.682783-CDS-P-lacustris_contig101:45062..451531693493445.682783-CDS-P-lacustris_contig101:45062..45153Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 45063..45153 -
1622815277.5262735-CDS-P-lacustris_contig101:45224..453401622815277.5262735-CDS-P-lacustris_contig101:45224..45340Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 45225..45340 -
1693493445.7006257-CDS-P-lacustris_contig101:45224..453401693493445.7006257-CDS-P-lacustris_contig101:45224..45340Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 45225..45340 -
1622815277.5358958-CDS-P-lacustris_contig101:45735..458971622815277.5358958-CDS-P-lacustris_contig101:45735..45897Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 45736..45897 -
1693493445.7121675-CDS-P-lacustris_contig101:45735..458971693493445.7121675-CDS-P-lacustris_contig101:45735..45897Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 45736..45897 -
1622815277.5454206-CDS-P-lacustris_contig101:46213..463301622815277.5454206-CDS-P-lacustris_contig101:46213..46330Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 46214..46330 -
1693493445.7275813-CDS-P-lacustris_contig101:46213..463301693493445.7275813-CDS-P-lacustris_contig101:46213..46330Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 46214..46330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig101.182.1prot_P-lacustris_contig101.182.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig101 43479..46330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig101.182.1

>prot_P-lacustris_contig101.182.1 ID=prot_P-lacustris_contig101.182.1|Name=mRNA_P-lacustris_contig101.182.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=369bp
GLTPALRQLKGCRHTLRSSDGNIKSSSFGAPRRGCLTCNLAARVMKDVDK
EQRAAQDLLRQEQGKRELVWARTRRDVLLMRHPTNWAGCSLLQGPRLQRS
TELEQVEAGTREVNINLAHIREKRGEGIAERMGGDSRPKLTPGAILTLSQ
RAAEAIAAFAKEVLGENDPTQRAKKAARIVAEATSEVAFVSRRHHPRTEL
LVTKLQATTRGWLARRLARVLLLRGGCRRELDVASGAWLYVWNYRAAVSD
APTGATAARRVYTGGAYPSPVDADGGEGLFRSWYPPALLKNEILPSPRAA
ARRADGEERKREARLALANSWLGDQRAKLDERDARSASLLELAEVVDLVE
RATVSLRMRLSAALASRGN
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mRNA from alignment at P-lacustris_contig101:43479..46330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig101.182.1 ID=mRNA_P-lacustris_contig101.182.1|Name=mRNA_P-lacustris_contig101.182.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2852bp|location=Sequence derived from alignment at P-lacustris_contig101:43479..46330- (Pleurocladia lacustris SAG_25_93)
GGGCTGACGCCTGCTCTGCGTCAACTCAAGGGATGTCGGCATACTCTTCG
TTCGAGCGATGGCAACATTAAGAGTAGTAGCTTTGGAGCACCTCGGCGTG
GATGCCTGACCTGCAATGTAGGTAAATGTACACCAAAACATGGATTGCCT
TCGGAGGTGTGGGCACTTCAATGATGGACGACAGCAATACGACTTCAAAC
TAGAGCACGGCAAACGAATCCTCTTACCTACCTATGTATGTGGATGTGCA
CACGAGGCGGCTGGGCTGGGACCCCGGTGATTGCTCTCTATGGTTCAACA
GCAGTATAGAGGCTTGGGGCAAAAAAAGTAATATTTTGAATTGAGTCATG
TATACAGCAGGTAGAGAAAATGTGAGAGTCGACTCCTTTTACACCTTCTG
CACCTGATATTACCACATACACGCTGTAAAAAGCTTGCGGCAAGGGTCAT
GAAAGACGTCGACAAAGAGCAACGGGCTGCTCAAGATCTCCTACGGCAAG
AGCAAGGCAAGCGAGAACTAGTGTGGGCTCGTACACGACGCGATGTTCTC
CTCATGAGGCATCCAACGAACTGGGCGGGGTGCTCTTTGCTGCAGGTACA
GCCGTAAAGTCTGCTGGAAGCACCTCCTATTCTGCGCGGAGCTTGAGGCT
TCGTGATCTCTCTCGTGCTATTCTGCCGGATCGTTGTGCTTCTGGTGGCT
CTCTTACTGTTCGTCTGTGTTCTAACTGCCATGGTTTTTGTCAAGGCTCG
TGGTATGCACTCTCGCGTACATTCCCCGAATATCTCGTATTCTTACGGGG
GACAATATTTTTTGCCAGAATCAGTAGAGACACAAGATGGTCACACAACA
CTATGAATACACTGCTACGAAGTAGCGCTGTCCGCTGCGATAAGTACGAA
GCGAGAAATACTCGCGTTCGCCGGGATTCGAACAACCTGCTAGACCACTT
TGCGGATGTGATGACGGGTTCCCTCTACTTTCAACCCCAGGGCCCCCGAC
TGCAAAGATCAACAGAGCTAGAACAAGTTGAGGCTGGGACACGGGAAGTC
AACATTAACCTCGCGCACATTCGAGAAAAGAGAGGTGAAGGCATCGCTGA
GAGGATGTCGCATCTTCGGCACTATGAACACCAAACTGAGGAGGACGGAC
ACGGTGTGGAAGGAGAGCGCGTTGCAGGGGAGGGGATTCTCGGCCGAAGC
TTACCCCAGGTGCAATTTTGACCCTTTCGCAACGTGCAGCTGAGGCCATT
GCGGCGTTTGCCAAAGAGGTGAGACAAACACAAAGGCATGATATTTCCCC
TTCCCGGCAAGGTTTTCGTGTACTGGGACCATTTACTCGGAAAAGGTTAT
GGCGTTGCTCGCGGGATCACCGGGCTAAAGCGAGAGAGTTTCTCACAACA
TTCGAGCTGAGTTGAGGCTGCGTAGTTGGTGACATCCGAAGTGGACGTTT
TGCACGTGGCTGAATCGTTTACGCGGGAGGATACTAGCGTGTACCACTTC
GTTCTTCGCCTTCGCGATTCTATTCTAGGTTCTTGGCGAAAACGATCCAA
CGCAGCGGGCGAAGAAGGCGGCGAGGATCGTCGCGGAGGCGACATCGGAG
GTGGCGTTTGTCAGTCGGCGACATCATCCTCGCACCGAACTTCTTGTGGT
AGGCGGTTGTTGTCGATGTTTTACGATGTTTTGCTTGTTGATGTACTTCG
TGCATGCCTCTTGCTCCCAACAGGGCGGCGTGGTATAAATGTTGGAGTGG
AGCTATGACATGTATAGTTTTTTTTTTCAACTCTCTTTGCATGTTCAACA
TAACGAATCTCAGCATCAGGAGCACTCAACCCCGCAAGTACCCCAAGCAC
TATCCTTGCTCGGGGGACTCTGTCTCCTATACAGCTGCTAGACGTATGAA
GGGCGCAAGAGGTGAACATTCCTGCGCTACCATGTAGAATTTGAAGCAAC
GCAGTTGCCACAATTCCGCTCGATGCCAAATTGGTATCGCACTACTCCTC
TATTGGCATCGCATTACTCATCTTCGCGCCCGACCCCGCTCCGGTTTAAA
CCTTCCTACCCGCCCCCAACATCCTTCCAAGACTAAGTTGCAGGCCACAA
CGAGAGGGTGGTTGGCTCGCCGTCTTGCCCGCGTGCTTCTCCTGAGAGGC
GGCTGCCGTAGAGAGCTTGACGTCGCTTCGGGAGCATGGCTGTACGTGTG
GAACTATCGGGCTGCTGTCTCTGACGCCCCCACCGGTGCCACGGCCGCCA
GGCGCGTGTATACTGGTGGCGCGTACCCTTCTCCTGTTGATGCGGATGGT
GGGGAAGGGTTGTTCCGATCATGGTACCCCCCTGCACTGCTGAAGAACGA
GATTCTGCCAAGCCCGCGTGCGGCCGCGAGAAGGGCGGACGGAGAGGAGA
GAAAGAGAGAGGCCCGGCTGGCCCTCGCCAACTCTTGGCTCGGCGATCAG
AGAGGTAATGCTGCCGAGTGTGAATGCGGCGGTATCCACGGCCAAAGGGG
TGGCCGGAAGTTGGGTTAGTTAGACATTTGCCGGGCACGATGGGGAGACT
TCGTCGAACTCGTACTCGAATTATCGTGCACGTCTATTGGAGGAGAGATA
GACTATTGATCATGGCCAACGAAACAAACTGCAGCTTGTCGAACGAACTT
AGTCGATGCAATGGTGTAACCTCCAACGTTAGCTAACCCGCATATGTCCA
ACTTGTCTTTTGTTCGACTAGCAGCCAAGCTTGACGAGCGTGACGCTCGC
TCTGCGTCGTTGCTCGAACTGGCGGAGGTGGTGGATTTAGTCGAGCGAGC
GACGGTGTCCCTGAGGATGCGGCTCTCAGCTGCTTTGGCATCGAGAGGGA
AT
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Coding sequence (CDS) from alignment at P-lacustris_contig101:43479..46330-

>mRNA_P-lacustris_contig101.182.1 ID=mRNA_P-lacustris_contig101.182.1|Name=mRNA_P-lacustris_contig101.182.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2214bp|location=Sequence derived from alignment at P-lacustris_contig101:43479..46330- (Pleurocladia lacustris SAG_25_93)
GGGCTGACGCCTGCTCTGCGTCAACTCAAGGGATGTCGGCATACTCTTCG
TTCGAGCGATGGCAACATTAAGAGTAGTAGCTTTGGAGCACCTCGGCGTG
GATGCCTGACCTGCAATGGGCTGACGCCTGCTCTGCGTCAACTCAAGGGA
TGTCGGCATACTCTTCGTTCGAGCGATGGCAACATTAAGAGTAGTAGCTT
TGGAGCACCTCGGCGTGGATGCCTGACCTGCAATCTTGCGGCAAGGGTCA
TGAAAGACGTCGACAAAGAGCAACGGGCTGCTCAAGATCTCCTACGGCAA
GAGCAAGGCAAGCGAGAACTAGTGTGGGCTCGTACACGACGCGATGTTCT
CCTCATGAGGCATCCAACGAACTGGGCGGGGTGCTCTTTGCTGCAGCTTG
CGGCAAGGGTCATGAAAGACGTCGACAAAGAGCAACGGGCTGCTCAAGAT
CTCCTACGGCAAGAGCAAGGCAAGCGAGAACTAGTGTGGGCTCGTACACG
ACGCGATGTTCTCCTCATGAGGCATCCAACGAACTGGGCGGGGTGCTCTT
TGCTGCAGGGCCCCCGACTGCAAAGATCAACAGAGCTAGAACAAGTTGAG
GCTGGGACACGGGAAGTCAACATTAACCTCGCGCACATTCGAGAAAAGAG
AGGTGAAGGCATCGCTGAGAGGATGGCCCCCGACTGCAAAGATCAACAGA
GCTAGAACAAGTTGAGGCTGGGACACGGGAAGTCAACATTAACCTCGCGC
ACATTCGAGAAAAGAGAGGTGAAGGCATCGCTGAGAGGATGGGAGGGGAT
TCTCGGCCGAAGCTTACCCCAGGTGCAATTTTGACCCTTTCGCAACGTGC
AGCTGAGGCCATTGCGGCGTTTGCCAAAGAGGGGAGGGGATTCTCGGCCG
AAGCTTACCCCAGGTGCAATTTTGACCCTTTCGCAACGTGCAGCTGAGGC
CATTGCGGCGTTTGCCAAAGAGGTTCTTGGCGAAAACGATCCAACGCAGC
GGGCGAAGAAGGCGGCGAGGATCGTCGCGGAGGCGACATCGGAGGTGGCG
TTTGTCAGTCGGCGACATCATCCTCGCACCGAACTTCTTGTGGTTCTTGG
CGAAAACGATCCAACGCAGCGGGCGAAGAAGGCGGCGAGGATCGTCGCGG
AGGCGACATCGGAGGTGGCGTTTGTCAGTCGGCGACATCATCCTCGCACC
GAACTTCTTGTGACTAAGTTGCAGGCCACAACGAGAGGGTGGTTGGCTCG
CCGTCTTGCCCGCGTGCTTCTCCTGAGAGGCGGCTGCCGTAGAGAGCTTG
ACGTCGCTTCGGGAGCATGGCTGTACGTGTGGAACTATCGGGCTGCTGTC
TCTGACGCCCCCACCGGTGCCACGGCCGCCAGGCGCGTGTATACTGGTGG
CGCGTACCCTTCTCCTGTTGATGCGGATGGTGGGGAAGGGTTGTTCCGAT
CATGGTACCCCCCTGCACTGCTGAAGAACGAGATTCTGCCAAGCCCGCGT
GCGGCCGCGAGAAGGGCGGACGGAGAGGAGAGAAAGAGAGAGGCCCGGCT
GGCCCTCGCCAACTCTTGGCTCGGCGATCAGAGAGACTAAGTTGCAGGCC
ACAACGAGAGGGTGGTTGGCTCGCCGTCTTGCCCGCGTGCTTCTCCTGAG
AGGCGGCTGCCGTAGAGAGCTTGACGTCGCTTCGGGAGCATGGCTGTACG
TGTGGAACTATCGGGCTGCTGTCTCTGACGCCCCCACCGGTGCCACGGCC
GCCAGGCGCGTGTATACTGGTGGCGCGTACCCTTCTCCTGTTGATGCGGA
TGGTGGGGAAGGGTTGTTCCGATCATGGTACCCCCCTGCACTGCTGAAGA
ACGAGATTCTGCCAAGCCCGCGTGCGGCCGCGAGAAGGGCGGACGGAGAG
GAGAGAAAGAGAGAGGCCCGGCTGGCCCTCGCCAACTCTTGGCTCGGCGA
TCAGAGAGCCAAGCTTGACGAGCGTGACGCTCGCTCTGCGTCGTTGCTCG
AACTGGCGGAGGTGGTGGATTTAGTCGAGCGAGCGACGGTGTCCCTGAGG
ATGCGGCTCTCAGCTGCTTTGGCATCGAGAGGGAATCCAAGCTTGACGAG
CGTGACGCTCGCTCTGCGTCGTTGCTCGAACTGGCGGAGGTGGTGGATTT
AGTCGAGCGAGCGACGGTGTCCCTGAGGATGCGGCTCTCAGCTGCTTTGG
CATCGAGAGGGAAT
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