mRNA_P-lacustris_contig101.179.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig101.179.1
Unique NamemRNA_P-lacustris_contig101.179.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Match: A0A6C0JA70_9ZZZZ (DUF4338 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JA70_9ZZZZ)

HSP 1 Score: 67.8 bits (164), Expect = 2.210e-9
Identity = 30/81 (37.04%), Postives = 56/81 (69.14%), Query Frame = 2 
Query:  479 FKEQAKRRSIQVSINFDEYSSIVRTACWYCGQYTYRGYSGVDRMQNAGTYQKDNVVACCRTCNFMKGSLSVTEFLGKVKDI 721
            +K+ + +R+I+ +I+  EY +I+   C YCG +  +G +G+DR+ +   Y+  N+V CC+TCN +KG+L++ +F  K+K+I
Sbjct:  365 YKKSSAKRNIKFNISETEYINILTYPCKYCGCFN-QGANGIDRVHSELPYEIGNIVPCCKTCNSLKGTLTLLQFKQKLKNI 444
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BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Match: A0A6C0B6K3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0B6K3_9ZZZZ)

HSP 1 Score: 66.2 bits (160), Expect = 6.170e-9
Identity = 25/70 (35.71%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:  512 VSINFDEYSSIVRTACWYCGQYTYRGYSGVDRMQNAGTYQKDNVVACCRTCNFMKGSLSVTEFLGKVKDI 721
            + +  +++ SI +  C+YCG    +G++G+DRM +   Y+ DN V+CC  CN MKG++    F+ +V+ I
Sbjct:  254 IDLTIEQFESITKQPCYYCGIIQDKGFNGIDRMDSTKGYEIDNCVSCCTECNMMKGAVDNITFIQRVEHI 323
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BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Match: A0A6C0LRQ9_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0LRQ9_9ZZZZ)

HSP 1 Score: 65.5 bits (158), Expect = 1.140e-8
Identity = 30/94 (31.91%), Postives = 51/94 (54.26%), Query Frame = 2 
Query:  440 EARKTDVVYRWRVFKEQAKRRSIQVSINFDEYSSIVRTACWYCGQYTYRGYSGVDRMQNAGTYQKDNVVACCRTCNFMKGSLSVTEFLGKVKDI 721
            E  +T++  ++  + +    R +   I +DE+ +IV     YCG        G+DR  ++  Y  DN +ACC+ CN+MKGSLS+  F+ + + I
Sbjct:  217 ELARTNIYEKYNRYIKSCNERCLDFRITYDEFINIVXXXXXYCGYXXXXXXXGIDRKNSSIGYILDNCIACCKMCNYMKGSLSIDVFIKRAEHI 310
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BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Match: L8GNC2_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GNC2_ACACA)

HSP 1 Score: 57.4 bits (137), Expect = 2.900e-7
Identity = 25/81 (30.86%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:  479 FKEQAKRRSIQVSINFDEYSSIVRTACWYCGQYTYRGYSGVDRMQNAGTYQKDNVVACCRTCNFMKGSLSVTEFLGKVKDI 721
            + ++A +R++   +    +  ++ + C+ CG    R   GVDR  N   Y  +N + CC+TCNF+KG+L + + L +V +I
Sbjct:   19 YMKKAAKRNLVFELERSHFDELLGSPCYLCGV---RSAGGVDRTDNTVGYTVENAMPCCKTCNFLKGTLPLCDVLTRVDEI 96
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BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Match: A0A6C0ITL0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ITL0_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 1.050e-6
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 2 
Query:  494 KRRSIQVSINFD----EYSSIVRTACWYCGQYTYRGY-SGVDRMQNAGTYQKDNVVACCRTCNFMKGSLSVTEFLGKVKDI 721
            +R +IQ  INFD    E  ++   +C+YC      G+ +G+DR  +   Y KDNVV CC+ CN++KGSL   +FL  V  I
Sbjct:  279 ERCAIQKGINFDLSKDECCNLFDKSCYYCKHKDDNGFLNGIDRKSSYLGYIKDNVVTCCKMCNYIKGSLGHNDFLQIVDHI 359
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BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Match: A0A6H5JE23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE23_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.450e-6
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = -2 
Query:  628 MSLTFPKNSVTESDPFMKLQVLQQATTLSFW 720
            MSLTFPKN  TE DPF+KLQVLQ+ATTLSFW
Sbjct:   74 MSLTFPKNFFTERDPFIKLQVLQEATTLSFW 104
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BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Match: A0A3C2CGI7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nomurabacteria bacterium TaxID=2052152 RepID=A0A3C2CGI7_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.370e-5
Identity = 26/88 (29.55%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  470 WRVFKEQAKRRSIQVSINFDEYSSIVRTACWYCGQ------YTYRGY-----SGVDRMQNAGTYQKDNVVACCRTCNFMKGSLSVTEF 700
            ++ + + AK R +   +  +E+ S++  +C+YC +      +  RG      +G+DR+ ++  Y  +NVV CC+ CN+ K  +SV EF
Sbjct:   83 FKTYADSAKNRCLSFELTKEEFVSLISKSCFYCNEPPSERWHEARGNGHMLSNGLDRIDSSKGYTTNNVVPCCKKCNYAKKQMSVEEF 170
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BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Match: A0A6H5JQZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.890e-5
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = -2 
Query:  280 IRLLSYSGAVTTTNPFRTGPVGLVVDFLADIHPLS 384
            +R +SYSGA TTTNP RTGPVGLV  FL +IHPLS
Sbjct:    1 MRRMSYSGAFTTTNPSRTGPVGLVDGFLVEIHPLS 35
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BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Match: A0A0F9F6T2_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9F6T2_9ZZZZ)

HSP 1 Score: 55.1 bits (131), Expect = 2.600e-5
Identity = 26/82 (31.71%), Postives = 45/82 (54.88%), Query Frame = 2 
Query:  488 QAKRRSIQVSINFDEYSSIVRTACWYCGQYTYR---------GY--SGVDRMQNAGTYQKDNVVACCRTCNFMKGSLSVTEF 700
            ++K+R I  +++FD +  +    C+YCG               Y  +G+DR+ N   Y +DNVV CC+ CN+ K ++S+ +F
Sbjct:  204 RSKKRKINFTLSFDTFVELTSQHCFYCGTKPSNITVNEAGNGDYVSNGIDRVDNNKGYIEDNVVPCCKVCNYAKNTMSLDQF 285
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6C0JA70_9ZZZZ2.210e-937.04DUF4338 domain-containing protein n=1 Tax=viral me... [more]
A0A6C0B6K3_9ZZZZ6.170e-935.71Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0LRQ9_9ZZZZ1.140e-831.91Uncharacterized protein n=1 Tax=viral metagenome T... [more]
L8GNC2_ACACA2.900e-730.86Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A6C0ITL0_9ZZZZ1.050e-640.74Uncharacterized protein (Fragment) n=1 Tax=viral m... [more]
A0A6H5JE23_9PHAE4.450e-683.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3C2CGI7_9BACT1.370e-529.55Uncharacterized protein n=1 Tax=Candidatus Nomurab... [more]
A0A6H5JQZ5_9PHAE1.890e-574.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0F9F6T2_9ZZZZ2.600e-531.71Uncharacterized protein n=1 Tax=marine sediment me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig101contigP-lacustris_contig101:15404..17351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size721
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig101.179.1prot_P-lacustris_contig101.179.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig101 15404..15832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.2901647-CDS-P-lacustris_contig101:15403..158321622815277.2901647-CDS-P-lacustris_contig101:15403..15832Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 15404..15832 -
1693493445.4985967-CDS-P-lacustris_contig101:15403..158321693493445.4985967-CDS-P-lacustris_contig101:15403..15832Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 15404..15832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815277.30867-UTR-P-lacustris_contig101:15832..158451622815277.30867-UTR-P-lacustris_contig101:15832..15845Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 15833..15845 -
1693493445.5083783-UTR-P-lacustris_contig101:15832..158451693493445.5083783-UTR-P-lacustris_contig101:15832..15845Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 15833..15845 -
1622815277.323528-UTR-P-lacustris_contig101:16400..164721622815277.323528-UTR-P-lacustris_contig101:16400..16472Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 16401..16472 -
1693493445.5179272-UTR-P-lacustris_contig101:16400..164721693493445.5179272-UTR-P-lacustris_contig101:16400..16472Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 16401..16472 -
1622815277.3333511-UTR-P-lacustris_contig101:16857..169281622815277.3333511-UTR-P-lacustris_contig101:16857..16928Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 16858..16928 -
1693493445.527829-UTR-P-lacustris_contig101:16857..169281693493445.527829-UTR-P-lacustris_contig101:16857..16928Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 16858..16928 -
1622815277.3451307-UTR-P-lacustris_contig101:17066..171381622815277.3451307-UTR-P-lacustris_contig101:17066..17138Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 17067..17138 -
1693493445.5369616-UTR-P-lacustris_contig101:17066..171381693493445.5369616-UTR-P-lacustris_contig101:17066..17138Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 17067..17138 -
1622815277.3562636-UTR-P-lacustris_contig101:17287..173511622815277.3562636-UTR-P-lacustris_contig101:17287..17351Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 17288..17351 -
1693493445.545707-UTR-P-lacustris_contig101:17287..173511693493445.545707-UTR-P-lacustris_contig101:17287..17351Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 17288..17351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig101.179.1

>prot_P-lacustris_contig101.179.1 ID=prot_P-lacustris_contig101.179.1|Name=mRNA_P-lacustris_contig101.179.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=143bp
MSARKSTTKPTGPVRNGFVVVTAPEYDKRRIRALQNKRYRRTAVYEKHLE
ARKTDVVYRWRVFKEQAKRRSIQVSINFDEYSSIVRTACWYCGQYTYRGY
SGVDRMQNAGTYQKDNVVACCRTCNFMKGSLSVTEFLGKVKDI
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mRNA from alignment at P-lacustris_contig101:15404..17351-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig101.179.1 ID=mRNA_P-lacustris_contig101.179.1|Name=mRNA_P-lacustris_contig101.179.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1948bp|location=Sequence derived from alignment at P-lacustris_contig101:15404..17351- (Pleurocladia lacustris SAG_25_93)
CCCGCCGGAGCTGGGAGCTCTCAGCGAACTGCGGACCTGAGGCTCTCCAA
CAACCAGCTCACAGGTTACTATATTTTTTTTTGGCGGTTGTTTTAGATGA
TTCTCGAACTGATATGGATGAACCCCGCCCACGCGTGGGTGAGTAGCCTT
CTAGAAGCCGGGTAGTTAATTTTTAATTCCCCGCTTTGTTCGTATGTGCT
CTTCTGCTTGCAGGCCCCATCCCGGCGGAGCTGGGAAACCTTGCCGCCCT
GGAGCATCTTGTTCTTATGGGAAACCAGCTAAGCGGTGAGTTACTACAAA
TTTTTCGTGCTTGCCCTCTCAAAATTGTGCATGAATCTCGTGTATGCGTA
CGCAGGACACATGTTCTAGAAGCTCTTCGCAGGACATCTCTCCTTATTTG
CTTTGCGCCCGTGCTGTTTACAGGGTCAATACCCAAGGAGCTGGGAGCCC
TCATCAAGCTACAGCGGCTTTCCTATCCAACAACCAGCTTTCAGGTAATA
GGCAGACTGTATAATTTTGCTTTCCCCGACTCCAGAACTGACGCTTCTAG
AAAGTGTGTCCTGCCAACAGCGTACGCAGGACCGATGTTCGAGAAGGCTG
TATCTAGAAACATTGAAGATACCATTACAGCCGCTCCTCTTACCTGTGAG
TTTGTTGTTACCGAGAGCCAGAGTCTTCAGTACGGTGAGGGCTCCCAGTG
CCGCGGGGATGAAACCTGCAAGCAGCAATCGAAAGTTGGCCAACGAGTTT
TTTTTTCGAACGCTTCTAGAACATGTATCCCGAGTACGCGTTGGCAGGAC
CGATGTTCGAGAAGCCGGAGAAACATTTTGTTTATTTCTGTCATGACCAC
GTACTTCGTTTTTACTCTCCTGTTTTCAGGTCCTATCCCCTCGGAGCTAG
GGAAGCTTGGGGCCCTTCAGGAGTTGCTTCTTTGGGGCAACAAACTGAGC
GGTGAGGTACCATTCTCAACCCCGTCTGCTTCTTTTTTTTTTTTTTTTTT
TCTGTCGAACGTGTCCCGCCAACGCGTGGGCGGGATACATTCTAGAAGGT
ATGAACAGTATCCCGACATGTGGAAAATATCATTACAACCGCTCCCTCTT
ACCTGCGAGTTGGTTGCTACTGAGATGCAGCACCTCCAGTTTGACAAGGG
CTCCCAGCGCCGCGGGGATGGAACCTGCAAGCAGCAAATCGAAAGTTGGC
CGACAAGGTTTTTTTTTTATCAGAACGCTTCTAGAACTTGTGTCCTGTGT
ACGCGTGGGTGAGTAGGCGAATGTTCTCGAAAGCGGGGATTTTTTTTTAT
TCTCCGCTAAGTTTCCCGCAAAATCTTGTTTGCACTTTAACGGGAACCAG
CTTAACGGTGAGGCACTAGTGACACCACACAATTCTACCATTTCTTTGCC
AAGTTGCCGTATTTCAAGCTGAATCCTGCGTGCGTTGGTAGTTGATTTGC
CGGCGAAAATCACGACACAACTGTCGCAACTCTATCGCGTACATGGCTGC
GAAAAGCGACAGCGGATGGATGTCAGCGAGGAAATCAACCACCAAACCTA
CGGGGCCGGTGCGGAATGGATTCGTGGTCGTGACCGCTCCGGAATACGAC
AAGAGACGTATCCGAGCCTTGCAAAACAAGCGATACCGAAGGACCGCGGT
GTATGAGAAGCACTTGGAAGCTAGGAAAACCGATGTGGTGTACAGGTGGC
GTGTGTTCAAGGAGCAGGCTAAAAGGCGGAGTATTCAGGTGTCGATTAAC
TTTGACGAGTACAGCAGCATCGTACGCACAGCGTGCTGGTACTGCGGCCA
ATATACATACAGGGGGTACTCAGGCGTAGACCGCATGCAGAACGCGGGGA
CGTACCAGAAAGACAACGTTGTGGCTTGTTGTAGAACTTGCAACTTCATG
AAAGGATCACTTTCGGTCACCGAATTCTTGGGAAAGGTCAAAGACATC
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Coding sequence (CDS) from alignment at P-lacustris_contig101:15404..17351-

>mRNA_P-lacustris_contig101.179.1 ID=mRNA_P-lacustris_contig101.179.1|Name=mRNA_P-lacustris_contig101.179.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=858bp|location=Sequence derived from alignment at P-lacustris_contig101:15404..17351- (Pleurocladia lacustris SAG_25_93)
ATGTCAGCGAGGAAATCAACCACCAAACCTACGGGGCCGGTGCGGAATGG
ATTCGTGGTCGTGACCGCTCCGGAATACGACAAGAGACGTATCCGAGCCT
TGCAAAACAAGCGATACCGAAGGACCGCGGTGTATGAGAAGCACTTGGAA
GCTAGGAAAACCGATGTGGTGTACAGGTGGCGTGTGTTCAAGGAGCAGGC
TAAAAGGCGGAGTATTCAGGTGTCGATTAACTTTGACGAGTACAGCAGCA
TCGTACGCACAGCGTGCTGGTACTGCGGCCAATATACATACAGGGGGTAC
TCAGGCGTAGACCGCATGCAGAACGCGGGGACGTACCAGAAAGACAACGT
TGTGGCTTGTTGTAGAACTTGCAACTTCATGAAAGGATCACTTTCGGTCA
CCGAATTCTTGGGAAAGGTCAAAGACATCATGTCAGCGAGGAAATCAACC
ACCAAACCTACGGGGCCGGTGCGGAATGGATTCGTGGTCGTGACCGCTCC
GGAATACGACAAGAGACGTATCCGAGCCTTGCAAAACAAGCGATACCGAA
GGACCGCGGTGTATGAGAAGCACTTGGAAGCTAGGAAAACCGATGTGGTG
TACAGGTGGCGTGTGTTCAAGGAGCAGGCTAAAAGGCGGAGTATTCAGGT
GTCGATTAACTTTGACGAGTACAGCAGCATCGTACGCACAGCGTGCTGGT
ACTGCGGCCAATATACATACAGGGGGTACTCAGGCGTAGACCGCATGCAG
AACGCGGGGACGTACCAGAAAGACAACGTTGTGGCTTGTTGTAGAACTTG
CAACTTCATGAAAGGATCACTTTCGGTCACCGAATTCTTGGGAAAGGTCA
AAGACATC
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