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Homology
BLAST of mRNA_P-lacustris_contig1009.177.1 vs. uniprot
Match: A0A6H5J9P0_9PHAE (Oxidoreductase-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P0_9PHAE) HSP 1 Score: 115 bits (289), Expect = 2.220e-25 Identity = 103/191 (53.93%), Postives = 114/191 (59.69%), Query Frame = 1
Query: 205 RLTRARASSRAEETQ-----RREYHRWSPAG--EMGATNDTLLNFEGEAGPRHQPEQPP-------AKPKPQSKSPQAVAMEEFSALERKLSPSGVXXXXXXXXXXXXXXXXXXXXXXGSTATVTTAAAGAYQSYQSLGSSGLSKAPSKRPEEPAAEECCGNGCSTCVWIGYWEELQAWEEAGREREEAPP 735
R RARAS A++ RR YHRWSP G + + + TLLN E KP P K PQAVAMEEF+ LERKL+ XXXXXXXXXXXXXXXXXXXXX + AA Q G S + +PEEP AEECCGNGC+TCVWIGYWEELQAWEEA REREEAPP
Sbjct: 43 RSPRARASGPAKQGPGAVQCRRRYHRWSPPGATDTNSGSGTLLNMAVEKXXXXXXXXXXXXXXXXXTKPPPLLKVPQAVAMEEFADLERKLASPREAXXXXXXXXXXXXXXXXXXXXXXXXQQASAGAA------QPDGQSSRVRNTLTKPEEPEAEECCGNGCATCVWIGYWEELQAWEEAEREREEAPP 227
BLAST of mRNA_P-lacustris_contig1009.177.1 vs. uniprot
Match: D7FV34_ECTSI (Oxidoreductase-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV34_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.200e-23 Identity = 96/198 (48.48%), Postives = 108/198 (54.55%), Query Frame = 1
Query: 205 RLTRARASSRAEETQ-----RREYHRWSPAGEMGATNDTLLNFEGEAGP----------------RHQPEQPPAKPKPQSKSPQAVAMEEFSALERKLSPSGVXXXXXXXXXXXXXXXXXXXXXXGSTATVTTAAAGAYQSYQSLGSSGLSKAPSKRPEEPAAEECCGNGCSTCVWIGYWEELQAWEEAGREREEAPP 735
R +RARAS AE+ RR YH WSP G + + +P PP KSPQAVAMEEF+ LERKL+ XXXXXXXXXXXXXXXXXX + A Q +G S + +PEEP AEECCGNGC+TCVWIGYWEELQAWEEAGREREEAPP
Sbjct: 43 RSSRARASGPAEQGLGAVQCRRRYHHWSPPGATDTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTKPALPP-------KSPQAVAMEEFADLERKLASPREAPRRXXXXXXXXXXXXXXXXXXXXXQQASAGGA------QPVGQSSRLRNTLTKPEEPEAEECCGNGCATCVWIGYWEELQAWEEAGREREEAPP 227
BLAST of mRNA_P-lacustris_contig1009.177.1 vs. uniprot
Match: UPI0009775C97 (hypothetical protein n=1 Tax=Motiliproteus sp. MSK22-1 TaxID=1897630 RepID=UPI0009775C97) HSP 1 Score: 53.5 bits (127), Expect = 1.300e-5 Identity = 19/44 (43.18%), Postives = 26/44 (59.09%), Query Frame = 1
Query: 604 SKRPEEPAAEECCGNGCSTCVWIGYWEELQAWEEAGREREEAPP 735
S +P P ECCG GCS CVW Y+E+L+ W+E + + P
Sbjct: 5 SAKPNRPEEHECCGGGCSPCVWDFYYEDLERWKEQQKNDQNESP 48
BLAST of mRNA_P-lacustris_contig1009.177.1 vs. uniprot
Match: W8X920_CASDE (Oxidoreductase-like domain-containing protein n=1 Tax=Castellaniella defragrans 65Phen TaxID=1437824 RepID=W8X920_CASDE) HSP 1 Score: 51.6 bits (122), Expect = 8.740e-5 Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query: 607 KRPEEPAAEECCGNGCSTCVWIGYWEELQAWEEAGREREE 726
+ P EP ECCGNGC+ CV+ Y EE +AW++A ++ EE
Sbjct: 14 EEPVEPDLNECCGNGCTPCVFDTYAEERRAWQQAVKDWEE 53
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | mitochondrion |
| Ec32 ortholog description | Oxidoreductase-like, N-terminal |
| Ec32 ortholog | Ec-12_005000.1 |
| Exons | 4 |
| Model size | 3044 |
| Cds size | 642 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815276.1427968-UTR-P-lacustris_contig1009:61683..61779 | 1622815276.1427968-UTR-P-lacustris_contig1009:61683..61779 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1009 61684..61779 + |
| 1693493444.5810168-UTR-P-lacustris_contig1009:61683..61779 | 1693493444.5810168-UTR-P-lacustris_contig1009:61683..61779 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1009 61684..61779 + |
| 1622815276.1901643-UTR-P-lacustris_contig1009:63570..64847 | 1622815276.1901643-UTR-P-lacustris_contig1009:63570..64847 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1009 63571..64847 + |
| 1693493444.6239355-UTR-P-lacustris_contig1009:63570..64847 | 1693493444.6239355-UTR-P-lacustris_contig1009:63570..64847 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1009 63571..64847 + |
| 1622815276.2019935-UTR-P-lacustris_contig1009:65317..66346 | 1622815276.2019935-UTR-P-lacustris_contig1009:65317..66346 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1009 65318..66346 + |
| 1693493444.6326277-UTR-P-lacustris_contig1009:65317..66346 | 1693493444.6326277-UTR-P-lacustris_contig1009:65317..66346 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1009 65318..66346 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815276.151711-CDS-P-lacustris_contig1009:61779..62301 | 1622815276.151711-CDS-P-lacustris_contig1009:61779..62301 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1009 61780..62301 + |
| 1693493444.592265-CDS-P-lacustris_contig1009:61779..62301 | 1693493444.592265-CDS-P-lacustris_contig1009:61779..62301 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1009 61780..62301 + |
| 1622815276.1630633-CDS-P-lacustris_contig1009:63185..63247 | 1622815276.1630633-CDS-P-lacustris_contig1009:63185..63247 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1009 63186..63247 + |
| 1693493444.6062446-CDS-P-lacustris_contig1009:63185..63247 | 1693493444.6062446-CDS-P-lacustris_contig1009:63185..63247 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1009 63186..63247 + |
| 1622815276.1785676-CDS-P-lacustris_contig1009:63512..63570 | 1622815276.1785676-CDS-P-lacustris_contig1009:63512..63570 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1009 63513..63570 + |
| 1693493444.6152372-CDS-P-lacustris_contig1009:63512..63570 | 1693493444.6152372-CDS-P-lacustris_contig1009:63512..63570 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1009 63513..63570 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1009.177.1 >prot_P-lacustris_contig1009.177.1 ID=prot_P-lacustris_contig1009.177.1|Name=mRNA_P-lacustris_contig1009.177.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=214bp
MAFSIRFGSFAAQTCTSCPLSASCASSCRRLAEMKGRLTRARASSRAEET QRREYHRWSPAGEMGATNDTLLNFEGEAGPRHQPEQPPAKPKPQSKSPQA VAMEEFSALERKLSPSGVEPMRRTPEQVAMEEFAALERKLGSTATVTTAA AGAYQSYQSLGSSGLSKAPSKRPEEPAAEECCGNGCSTCVWIGYWEELQA WEEAGREREEAPP* back to topmRNA from alignment at P-lacustris_contig1009:61684..66346+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1009.177.1 ID=mRNA_P-lacustris_contig1009.177.1|Name=mRNA_P-lacustris_contig1009.177.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4663bp|location=Sequence derived from alignment at P-lacustris_contig1009:61684..66346+ (Pleurocladia lacustris SAG_25_93) GAGAGAGAAACAACCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGGCGCA
GAGGCTGGAACGGGTTTGTTGTCACTGGGTGTCAATTTATTCGTCGATGG
CCTTCAGCATTCGTTTCGGATCCTTTGCTGCCCAAACCTGCACATCTTGT
CCTCTGTCGGCCTCTTGTGCTTCTTCATGCCGTCGTCTGGCGGAGATGAA
GGGTCGATTAACCCGCGCAAGAGCGAGTAGTCGAGCCGAGGAGACGCAGC
GGAGGGAGTATCATCGATGGTCACCTGCTGGGGAAATGGGCGCAACGAAC
GACACCCTGTTGAACTTTGAAGGCGAAGCGGGACCACGCCACCAACCCGA
GCAGCCGCCAGCAAAACCAAAGCCGCAGTCGAAGTCTCCCCAGGCCGTGG
CAATGGAGGAGTTCTCCGCTTTGGAGCGCAAGCTTTCCCCGTCGGGCGTT
GAACCGATGAGAAGGACTCCGGAGCAAGTCGCGATGGAGGAGTTCGCTGC
TCTTGAGCGAAAGCTTGGCTCGACAGCGACAGTCACAACAGCAGCAGCAG
GCGCCTATCAATCCTATCAATCCCTCGGGTCAAGTGGTTTGAGCAAGGCT
CCTTCGAAAAGACCTGAGGTCAGTTCGGACTCTCTCGGTATTTGAACGTA
CTCAATAACGTGTTGGCTTACTCTTTCGAGGGTACTTCGGAGGTTGCCAT
ACCATCGTCAACGTTAGTTCGAATTTGACATAAGTTGATTTGAGCTTAGG
AGGGGGGTGCGACTTGGATGGCCTTGAGACCGGGCCTTGGACCCTTGGAT
GTGTGTGTGGCCTTGATGCCGGGCCCTTGATGACCCTATGTGGCCTAGAT
GCCGGGCCTTGGACCCTTTGGAAGATGGTGGTCTTGAGACCGTCTCTTGG
AGATATGAAAATATTGATCGATCACATGAAACACACGAACAAAGAGGGAT
AAAAGGAAAGTGGGCCCAGAGAGACACACGCCACTCTTTTCCACTCTCCT
GAACCCTGCCCTCATTGGCCAACAGAAGGGTCCAAGCCAGAGCCTCCATT
ATTGGTGGAGATAACCTCTGTACTTCAACTCGTCACTCCTGCTCTCATCA
TACGTCATCCATCCTATTCCGCCGCATATCTCATACATACGTACTCAACC
GTTACCTCAAAGATCCACTGCTACAAGTACCTCAAACATGAGTTTTTAGG
TGGGATTTCTTATATGGATTCACAGAATCGAAGAGAAACAGCCGTATTGC
GCAGAATCACCACCTTATGCATGCTCTGGCGCGGCTCTACAAACGAAGAT
TGAGCTTTTGGGATTGAGAAACGTCTACTGCAAGACCTTGCACAAGATTT
TGTTCCGAGCTGTCTGTTGACTACCCGTAGATATTCCGAAGGGGCATGTA
ACGACAAATTATTGCAGGACTGCACCACTTTTTACAGCCCCCGTCTTGAC
CGATTTCGGCTTTTTGGGCATCCGTCGTCATCATCCATCCCATCATATCC
AGGAACCTGCGGCGGAAGAATGCTGCGGTAACGGCTGCTCTACGTGCGTG
TGGATTGGGTACTGGTGAGACTGCCGCAGTTCCTTCAGATGTGTGCCATC
GTTGAAAGCAGGGCGATCAAACTCTACAGTTGCGGAACAACATCCTAGGA
TGTGCCGAGAAAATCACAATCTACCACGTTGACGTAGATAGGTTGTTTTT
TTATTGCGGCGTGGAGTGCTGGTTAGGTGTCTCCGCTACATCTCATGACG
ACCCGATATATTGGAACGACCCCATATTCTCCACGTCCGATCCTTCTCGA
TGTACTCCCGTCCTGGAACCTCCCGACAGGGAAGAGCTGCAGGCGTGGGA
AGAAGCAGGACGCGAGCGAGAGGAGGCGCCGCCGTGAAGTCGTGCGGAAA
TATTCCAATAGGTTCTGACTTCTGCTGGTGTGGCCACTCCGGACGTTCAA
TGTTTTTGCCTAGAAGCATCGCATGAGGTGTTGGCCGCAGCCCCAGGAGT
GTTATGTTAGAGCGTTTGATTGTCTCAGCGTTTGCATCTCTACTCGGACC
AAAACTCGGTCAGGGTTGTTAGTTCTTGACTCGACGTAGGTGTTGGGTGA
AAGCTTAGCTACAGTAGGCACCTTTATTATTTCTTGCACCCGCTTCGCGC
TGCGAACGTCAGGTCTTGAACAACTGCTGTTTCTGTGTAGCTCGTGTAGC
TGTACAATTAATGGCCCAACATGGCCCAAGCTGTATAATCCTGTACATGT
ACTAGCCCACAGCAGATTGTGCCGAGTCGGGGCTGCGTGCTTGTGTTGTT
TTATGGTTTTGTGTTTGTTTGCCGTCTTGGATGCCTCATGTCCATGGCTA
TGTCAGACCATGAATAGCAAGTTCAGCTGAGAAGAGGAGGACGTGCTACA
CACTGCCTCCCCTGCCTGTTGCGTGGCCTAAGGCACATGTGTGTATTTTA
TGCGGCCAGACGTTCGAAGTCGTCCTTTTTCGCTGTTCGTAGTTTTTGCG
ACGTGTGTTCGTCGAGGTCCGTCCGCATTCCACTCCACGGTTACATTGTA
CTGTACCGAAGACGGCTCTTGCACATACATGATCTATTGGGAATCTCTAC
GCACGTGAATTGAAAGCTAGGCTTCATCGTTACGTTTACATCTCACAATA
CTTTCTGTGGTGGCTCCTCAAAACCGGAAGGAGAGTCTCGACAAGAATGA
TCGAGGGTCAATAAACTTTTTTTCAAGTTGTAGGATAGCATCTCCGTGGT
TCTCTTCTGATGCGATGGTGAAGTACACTGCGCTCCGTACTCAACATGTT
CGTCCGCTATCCGGTGAGGAACCAAGCCACTGCTGAAGGGTGGGCAGTCG
GCGGCTTTGAAGGACCACACAGGTGAGACCCCAACAAAGTGCATGGGTCT
CCGCGGTGAAGGGTCAAGTTCTAAAAGATGCTTCTTGTAAAGCGCGATCA
CGCAAAATGACATGATTTTCAAGCCTTTTGGTTGTTGTGACATGATGATA
TGTCTTGTGGAGTGAAATGACAAGATCCGGCGACCATAGCCCTTTCTCTC
AAATGTCTCTTGGCACGCGCACAGAAGGGCTAAGTCGAGGACCCCGATAC
CAGCCGAGGCCAAGGAGTTGGCTGCACCACCAGCGGCTAGCGCAAGGCAA
GCTTCATCGGAGAGGTGGGCTGCACTGGATCATTGTCTCCCAATCGCAAC
GAGATGCGTGCTGTGTTATGCCTAATTCGACTCGGCAGTCGTTGCTTCAA
CGCACGTTCAACGCAACGAAGGTTGCTCAGCTGTTTTCACCTTGCGTTCG
AGATGCCGAGAGCCATTGTTGCAGAGGCCATGCTTCTATCAGTCGTCGGG
AAATTGTGTACGGCACGGACCATGTCTACTTTCTAGGCGGTTGTTCCAGG
CTTTGTTTACCCAAGGATGACTTGCGAAGATGTTTTCTTTTAATACATGA
ACTAGAAGTACGAATTTTGCACCAGGTGACAGTACACGCCCCCAAAACTG
ACGGTGTTGTACGGCATCGCGAGGCAGCTTTCCATGTGCATCGATAAAGC
TTTAGCCTGCTCTCATGACAACTCTCAAGACCTCTTGCCTACCTAGATTG
CCTCCTTCTCGCCGACTTCGCTTGTTTCTGACAGATGGACCCGTCCGCGT
AAAGTCTATATGGTGAAGGTTAGTAAACCTGTATCCATTAAAGGTACTCA
CCGTCTTATCACGGGCGACCGTGGCGCGTCTGGGGAGACACGTCGGTGGT
CGAGGTTAAAGAATGGTGGTTTGAATTTCAGAACTGCTTGATGAGATAGT
GCTACGCTGGTGATAGGGCGGGGCCGAGGTTTTGAGTTCCATCCGCCGAC
CGTGAAAGGGCAAGGTTGATGTTTGGTGCAGTGCAGATAGGTAAGCAGGT
TTGTTGATCGCTGCAGGCGTGATTCTTAGGTAGCATCGACCGCACTTCGG
CTGACCAACGCATTCCTGTGTGTGCGTGCGGTTTGCTCTTCTATGGTGAG
GCGGCCGAAGGAACTAGAGGGACGTGGAAAGGCGATTGGGACAAGAAGTA
GATGCTTGTGAGGTTCAGTGTTAAGTATTCAAGGCCAAGGTAGCACTTCT
GCGCGCTTTTCTGTCGTGCTGTATGCACGATGTACCTGTGCTGTTGATCG
GTCTACAGCAATTAAATCCGGGCGTGAAACATGGCGTCATCGTCGAGTGC
TAAATTGGTCGTTCGAAAGTTCTTGTGAGAATTTGGTGGTGCGTTCGATC
CTGTTCACACTTTGCGTTGGGGCGGGTATAGTACACGGACGACCAACAAA
CGTGACGTTTTGGATTGGATGAGAGATTCGGGTGTCAAATGGAGCCACAT
TGCACCCTTATCCTTGCGTATCGATGTTCAATCAGCGGTAAGTGTGGCAG
AGAAGCGGGTGAACGGAACTTGAAGATTAGTTTTCGTCCAAAATGCCTAG
TCTTATCCCTGGTTTGATATCGTGCGCTGTTCCCTCTCCTCGATAAGTAC
AGCAGCCACAAGTACGCAGTATCGGATTGTAGAAGAAGTAAAACACCACT
TCGACAAGCGCACCCTCACATACCAACAATGTAGGCAGGACCCAGTGGTA
TCAAAGTGCGAAGCAGAAGTTCTACGCACGCACATGCGTAGTTTGCATGA
ATAAACAGCGCGC back to topCoding sequence (CDS) from alignment at P-lacustris_contig1009:61684..66346+ >mRNA_P-lacustris_contig1009.177.1 ID=mRNA_P-lacustris_contig1009.177.1|Name=mRNA_P-lacustris_contig1009.177.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1284bp|location=Sequence derived from alignment at P-lacustris_contig1009:61684..66346+ (Pleurocladia lacustris SAG_25_93) ATGGCCTTCAGCATTCGTTTCGGATCCTTTGCTGCCCAAACCTGCACATC TTGTCCTCTGTCGGCCTCTTGTGCTTCTTCATGCCGTCGTCTGGCGGAGA TGAAGGGTCGATTAACCCGCGCAAGAGCGAGTAGTCGAGCCGAGGAGACG CAGCGGAGGGAGTATCATCGATGGTCACCTGCTGGGGAAATGGGCGCAAC GAACGACACCCTGTTGAACTTTGAAGGCGAAGCGGGACCACGCCACCAAC CCGAGCAGCCGCCAGCAAAACCAAAGCCGCAGTCGAAGTCTCCCCAGGCC GTGGCAATGGAGGAGTTCTCCGCTTTGGAGCGCAAGCTTTCCCCGTCGGG CGTTGAACCGATGAGAAGGACTCCGGAGCAAGTCGCGATGGAGGAGTTCG CTGCTCTTGAGCGAAAGCTTGGCTCGACAGCGACAGTCACAACAGCAGCA GCAGGCGCCTATCAATCCTATCAATCCCTCGGGTCAAGTGGTTTGAGCAA GGCTCCTTCGAAAAGACCTGAGATGGCCTTCAGCATTCGTTTCGGATCCT TTGCTGCCCAAACCTGCACATCTTGTCCTCTGTCGGCCTCTTGTGCTTCT TCATGCCGTCGTCTGGCGGAGATGAAGGGTCGATTAACCCGCGCAAGAGC GAGTAGTCGAGCCGAGGAGACGCAGCGGAGGGAGTATCATCGATGGTCAC CTGCTGGGGAAATGGGCGCAACGAACGACACCCTGTTGAACTTTGAAGGC GAAGCGGGACCACGCCACCAACCCGAGCAGCCGCCAGCAAAACCAAAGCC GCAGTCGAAGTCTCCCCAGGCCGTGGCAATGGAGGAGTTCTCCGCTTTGG AGCGCAAGCTTTCCCCGTCGGGCGTTGAACCGATGAGAAGGACTCCGGAG CAAGTCGCGATGGAGGAGTTCGCTGCTCTTGAGCGAAAGCTTGGCTCGAC AGCGACAGTCACAACAGCAGCAGCAGGCGCCTATCAATCCTATCAATCCC TCGGGTCAAGTGGTTTGAGCAAGGCTCCTTCGAAAAGACCTGAGGAACCT GCGGCGGAAGAATGCTGCGGTAACGGCTGCTCTACGTGCGTGTGGATTGG GTACTGGAACCTGCGGCGGAAGAATGCTGCGGTAACGGCTGCTCTACGTG CGTGTGGATTGGGTACTGGGAAGAGCTGCAGGCGTGGGAAGAAGCAGGAC GCGAGCGAGAGGAGGCGCCGCCGTGAGGAAGAGCTGCAGGCGTGGGAAGA AGCAGGACGCGAGCGAGAGGAGGCGCCGCCGTGA back to top
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