mRNA_P-lacustris_contig1008.167.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1008.167.1
Unique NamemRNA_P-lacustris_contig1008.167.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5JFN2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN2_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.110e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   76 SEPNSGHQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAGV 201
            S+PN   +F     A+QHGL +TG LQPCGGC++AKGK+AGV
Sbjct:   27 SQPN---EFLLRELAKQHGLRLTGVLQPCGGCLQAKGKKAGV 65
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5J7L5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7L5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.790e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   94 HQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAGV 201
            ++F     A+QHGL +TG LQPCGGC++AKGK+AGV
Sbjct:   49 NEFLLRELAKQHGLRLTGVLQPCGGCLQAKGKKAGV 84
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5JEZ3_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEZ3_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.300e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   94 HQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAGV 201
            ++F     A+QHGL +TG LQPCGGC++AKGK+AGV
Sbjct:   49 NEFLLRELAKQHGLRLTGVLQPCGGCLQAKGKKAGV 84
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5KS66_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS66_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.360e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   94 HQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAGV 201
            ++F     A+QHGL +TG LQPCGGC++AKGK+AGV
Sbjct:   49 NEFLLRELAKQHGLRLTGVLQPCGGCLQAKGKKAGV 84
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5KKG5_9PHAE (Integrase catalytic domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.400e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   94 HQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAGV 201
            ++F     A+QHGL +TG LQPCGGC++AKGK+AGV
Sbjct:   49 NEFLLRELAKQHGLRLTGVLQPCGGCLQAKGKKAGV 84
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.400e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   94 HQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAGV 201
            ++F     A+QHGL +TG LQPCGGC++AKGK+AGV
Sbjct:   49 NEFLLRELAKQHGLRLTGVLQPCGGCLQAKGKKAGV 84
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5KSN7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSN7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.430e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   94 HQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAGV 201
            ++F     A+QHGL +TG LQPCGGC++AKGK+AGV
Sbjct:  692 NEFLLRELAKQHGLRLTGVLQPCGGCLQAKGKKAGV 727
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5K6Z8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Z8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.180e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   94 HQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAGV 201
            ++F     A+QHGL +TG L+PCGGC++AKGK+AGV
Sbjct:   49 NEFLLRELAKQHGLRLTGVLRPCGGCLQAKGKKAGV 84
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5K0D0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D0_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 2.160e-5
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   94 HQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAG 198
            ++F     A+QHGL +TG LQPCGGC++AKGK AG
Sbjct:   30 NEFLLLELAKQHGLRLTGVLQPCGGCLQAKGKNAG 64
[Close]
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Match: A0A6H5JHE8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE8_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 3.000e-5
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   94 HQFSFAAQARQHGLVVTGELQPCGGCVEAKGKRAGV 201
            ++F     A+QHGL +TG LQPCGGC++AKGK+A V
Sbjct:  407 NEFLLLELAKQHGLRLTGVLQPCGGCLQAKGKKADV 442
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1008.167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JFN2_9PHAE1.110e-659.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7L5_9PHAE2.790e-661.11Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JEZ3_9PHAE3.300e-661.11Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KS66_9PHAE3.360e-661.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKG5_9PHAE3.400e-661.11Integrase catalytic domain-containing protein n=6 ... [more]
A0A6H5K2R1_9PHAE3.400e-661.11Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KSN7_9PHAE3.430e-661.11Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K6Z8_9PHAE1.180e-558.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K0D0_9PHAE2.160e-560.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JHE8_9PHAE3.000e-558.33Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1008contigP-lacustris_contig1008:40469..40672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.1213763-CDS-P-lacustris_contig1008:40468..406721622815275.1213763-CDS-P-lacustris_contig1008:40468..40672Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1008 40469..40672 +
1693493443.8443103-CDS-P-lacustris_contig1008:40468..406721693493443.8443103-CDS-P-lacustris_contig1008:40468..40672Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1008 40469..40672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1008.167.1prot_P-lacustris_contig1008.167.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1008 40469..40672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1008.167.1

>prot_P-lacustris_contig1008.167.1 ID=prot_P-lacustris_contig1008.167.1|Name=mRNA_P-lacustris_contig1008.167.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=68bp
MPFDYQGSCVDLSPTPPPAAEPHAFSEPNSGHQFSFAAQARQHGLVVTGE
LQPCGGCVEAKGKRAGVS
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mRNA from alignment at P-lacustris_contig1008:40469..40672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1008.167.1 ID=mRNA_P-lacustris_contig1008.167.1|Name=mRNA_P-lacustris_contig1008.167.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=204bp|location=Sequence derived from alignment at P-lacustris_contig1008:40469..40672+ (Pleurocladia lacustris SAG_25_93)
ATGCCTTTCGACTATCAGGGCTCTTGTGTAGATCTTTCACCAACTCCGCC
CCCTGCCGCTGAGCCGCATGCTTTTTCGGAGCCGAATAGCGGTCACCAAT
TTTCCTTTGCAGCACAAGCCAGGCAACATGGGTTGGTGGTGACGGGCGAG
TTGCAGCCGTGCGGTGGATGCGTGGAGGCAAAGGGGAAGAGAGCGGGCGT
GTCA
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Coding sequence (CDS) from alignment at P-lacustris_contig1008:40469..40672+

>mRNA_P-lacustris_contig1008.167.1 ID=mRNA_P-lacustris_contig1008.167.1|Name=mRNA_P-lacustris_contig1008.167.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=408bp|location=Sequence derived from alignment at P-lacustris_contig1008:40469..40672+ (Pleurocladia lacustris SAG_25_93)
ATGCCTTTCGACTATCAGGGCTCTTGTGTAGATCTTTCACCAACTCCGCC
CCCTGCCGCTGAGCCGCATGCTTTTTCGGAGCCGAATAGCGGTCACCAAT
TTTCCTTTGCAGCACAAGCCAGGCAACATGGGTTGGTGGTGACGGGCGAG
TTGCAGCCGTGCGGTGGATGCGTGGAGGCAAAGGGGAAGAGAGCGGGCGT
GTCAATGCCTTTCGACTATCAGGGCTCTTGTGTAGATCTTTCACCAACTC
CGCCCCCTGCCGCTGAGCCGCATGCTTTTTCGGAGCCGAATAGCGGTCAC
CAATTTTCCTTTGCAGCACAAGCCAGGCAACATGGGTTGGTGGTGACGGG
CGAGTTGCAGCCGTGCGGTGGATGCGTGGAGGCAAAGGGGAAGAGAGCGG
GCGTGTCA
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