mRNA_P-lacustris_contig1006.154.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1006.154.1
Unique NamemRNA_P-lacustris_contig1006.154.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1006.154.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 3.180e-37
Identity = 84/137 (61.31%), Postives = 93/137 (67.88%), Query Frame = 3 
Query:    3 CKKPGSSQSTLFHR*LLGLTGSSNEQHVFDYVEHLKHIALDCRESNLRTSTTLNGNN---H*SAHEQVEEGLLGRGCSRRGTQSGGDKSITGAVLEIVRRLPPLPDFVLAFKRVKRPRDLPRKAETLQSAGCSTNEQ 404
            CKKPGS QSTLFHR LL +TGS +E H F+YVEHL  IALDCRESNL TSTTL+GNN   + S H    EG+ G  C     +S        +   IVRRLPPLPDFV AFK  KRPRD  RK ETLQ AGC+TNEQ
Sbjct:   33 CKKPGS-QSTLFHRWLLHVTGSPDE-HGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAEVNRS------QESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
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BLAST of mRNA_P-lacustris_contig1006.154.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.670e-21
Identity = 61/111 (54.95%), Postives = 70/111 (63.06%), Query Frame = 3 
Query:   54 GLTGSSNEQHVFDYVEHLKHIALDCRESNLRTSTTLNGNNH*SAH-EQVEEGLLGRGCSRRGTQSGGDKSITGAVLEIVRRLPPLPDFVLAFKRVKRPRDLPRKAETLQSA 383
            G  GS NEQ  F YVEHL  IALDCRESNLRTSTT +GNN    H  +++     +G +  G ++           +IVR LP LPDFV AFK VKRPRDLPRK ETLQ A
Sbjct:    9 GYKGSPNEQR-FGYVEHLDDIALDCRESNLRTSTTSHGNN---LHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPA 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1006.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN6_9PHAE3.180e-3761.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPQ6_ECTSI3.670e-2154.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1006contigP-lacustris_contig1006:1794..3036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size1213
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1006.154.1prot_P-lacustris_contig1006.154.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1006 1980..2129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815273.0105608-UTR-P-lacustris_contig1006:1793..19791622815273.0105608-UTR-P-lacustris_contig1006:1793..1979Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1006 1794..1979 +
1693493442.749563-UTR-P-lacustris_contig1006:1793..19791693493442.749563-UTR-P-lacustris_contig1006:1793..1979Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1006 1794..1979 +
1622815273.035743-UTR-P-lacustris_contig1006:2129..27681622815273.035743-UTR-P-lacustris_contig1006:2129..2768Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1006 2130..2768 +
1693493442.7689586-UTR-P-lacustris_contig1006:2129..27681693493442.7689586-UTR-P-lacustris_contig1006:2129..2768Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1006 2130..2768 +
1622815273.049653-UTR-P-lacustris_contig1006:2798..30361622815273.049653-UTR-P-lacustris_contig1006:2798..3036Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1006 2799..3036 +
1693493442.781356-UTR-P-lacustris_contig1006:2798..30361693493442.781356-UTR-P-lacustris_contig1006:2798..3036Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1006 2799..3036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815273.0232108-CDS-P-lacustris_contig1006:1979..21291622815273.0232108-CDS-P-lacustris_contig1006:1979..2129Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1006 1980..2129 +
1693493442.7576802-CDS-P-lacustris_contig1006:1979..21291693493442.7576802-CDS-P-lacustris_contig1006:1979..2129Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1006 1980..2129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1006.154.1

>prot_P-lacustris_contig1006.154.1 ID=prot_P-lacustris_contig1006.154.1|Name=mRNA_P-lacustris_contig1006.154.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=50bp
MNRLKKAFWAEGVAGAARKAEEISRSQEPYWKSCVVFLRCLILCSHSSV*
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mRNA from alignment at P-lacustris_contig1006:1794..3036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1006.154.1 ID=mRNA_P-lacustris_contig1006.154.1|Name=mRNA_P-lacustris_contig1006.154.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1243bp|location=Sequence derived from alignment at P-lacustris_contig1006:1794..3036+ (Pleurocladia lacustris SAG_25_93)
GGTGCAAAAAGCCTGGGAGTTCTCAGTCTACTCTGTTTCATCGTTAGCTC
CTTGGCTTGACAGGCTCCTCCAACGAACAACATGTGTTTGATTACGTCGA
GCACCTCAAACACATTGCCCTTGACTGCCGTGAAAGTAACTTAAGGACTT
CCACTACGTTGAACGGCAATAATCATTAGTCTGCACATGAACAGGTTGAA
GAAGGCCTTTTGGGCCGAGGGTGTAGCAGGCGCGGCACGCAAAGCGGAGG
AGATAAGTCGATCACAGGAGCCGTACTGGAAATCGTGCGTCGTCTTCCTC
CGCTGCCTGATTTTGTGCTCGCATTCAAGCGTGTGAAACGGCCGCGAGAC
CTACCGCGCAAAGCAGAGACGTTGCAATCTGCAGGGTGCTCTACGAACGA
GCAGTGATTGTTGGGTGGGGTAGTTGACGAGTATCTGTGTGGGGCCGTGC
GCCAAAACATCCGAGGCAGGAAATTTTGGGACACCTGTGTTGTGTTGGTA
AAGCACTTGGCAGGTGATAACTCGTGCTCGTGCTGGTAGAACTCAAACTA
TATGGCTAGAAGTTTGGAGTTTACATTCTTGTTGGACAATTCAGCTGCAA
ACAGTGAAACCAGGGTGTTTTCCGCTGTCTCAACCTCTAGAACCCGCTTG
AAGACACTATACTTTTAACATTCAACAGGACACACTAACAACGCCGCTAC
ACCTACCGCGAAGGCATGTGTACTACACTGCTACCCTGCGCTACGAAGCA
ACACGGTAGTCGTTACTGAGCACACCATTAGGCTGCCAGCCTACTTCTTC
ATGCACTGGTTGGTAGTGGCCAAAAAAGGATTCGATAACTAAGTTTCTCG
GTGACACTCAACATCACATTACGACATTCAGATTCAGCTGGCGTAATATA
CAACTGGAAACTCATATCGCACGCGTGGTTGTGTTTTCACCACGTTGCCT
CACGACTGCAAGACATCGCCCTTGGGAGGATGGTCCCTACATGTAAGAGG
AGGCAGAGAAACGTCTCGTCCGGTACAACGCAAAGCAAGCGCTGCACACA
AAGAGAGAGTAGCGAAAATGCACCATCGACCGGCCATCAATTCCGACAAC
GACAATTGCAATACATGTTGTATCACCGTGGACTGTTGCGACGCCCCGTT
ACACATGAAGTAATTTGCCCCCTGTCTTGATCATCGCGTTTGCAGTGACC
GACAGCTGTCACAGGCAGTTGGTTCGATTTCGTCTTCACACCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1006:1794..3036+

>mRNA_P-lacustris_contig1006.154.1 ID=mRNA_P-lacustris_contig1006.154.1|Name=mRNA_P-lacustris_contig1006.154.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=300bp|location=Sequence derived from alignment at P-lacustris_contig1006:1794..3036+ (Pleurocladia lacustris SAG_25_93)
ATGAACAGGTTGAAGAAGGCCTTTTGGGCCGAGGGTGTAGCAGGCGCGGC
ACGCAAAGCGGAGGAGATAAGTCGATCACAGGAGCCGTACTGGAAATCGT
GCGTCGTCTTCCTCCGCTGCCTGATTTTGTGCTCGCATTCAAGCGTGTGA
ATGAACAGGTTGAAGAAGGCCTTTTGGGCCGAGGGTGTAGCAGGCGCGGC
ACGCAAAGCGGAGGAGATAAGTCGATCACAGGAGCCGTACTGGAAATCGT
GCGTCGTCTTCCTCCGCTGCCTGATTTTGTGCTCGCATTCAAGCGTGTGA
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