mRNA_P-lacustris_contig1006.154.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1006.154.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE) HSP 1 Score: 142 bits (357), Expect = 3.180e-37 Identity = 84/137 (61.31%), Postives = 93/137 (67.88%), Query Frame = 3 Query: 3 CKKPGSSQSTLFHR*LLGLTGSSNEQHVFDYVEHLKHIALDCRESNLRTSTTLNGNN---H*SAHEQVEEGLLGRGCSRRGTQSGGDKSITGAVLEIVRRLPPLPDFVLAFKRVKRPRDLPRKAETLQSAGCSTNEQ 404
CKKPGS QSTLFHR LL +TGS +E H F+YVEHL IALDCRESNL TSTTL+GNN + S H EG+ G C +S + IVRRLPPLPDFV AFK KRPRD RK ETLQ AGC+TNEQ
Sbjct: 33 CKKPGS-QSTLFHRWLLHVTGSPDE-HGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAEVNRS------QESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
BLAST of mRNA_P-lacustris_contig1006.154.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 3.670e-21 Identity = 61/111 (54.95%), Postives = 70/111 (63.06%), Query Frame = 3 Query: 54 GLTGSSNEQHVFDYVEHLKHIALDCRESNLRTSTTLNGNNH*SAH-EQVEEGLLGRGCSRRGTQSGGDKSITGAVLEIVRRLPPLPDFVLAFKRVKRPRDLPRKAETLQSA 383
G GS NEQ F YVEHL IALDCRESNLRTSTT +GNN H +++ +G + G ++ +IVR LP LPDFV AFK VKRPRDLPRK ETLQ A
Sbjct: 9 GYKGSPNEQR-FGYVEHLDDIALDCRESNLRTSTTSHGNN---LHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPA 115 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1006.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1006.154.1 >prot_P-lacustris_contig1006.154.1 ID=prot_P-lacustris_contig1006.154.1|Name=mRNA_P-lacustris_contig1006.154.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=50bp MNRLKKAFWAEGVAGAARKAEEISRSQEPYWKSCVVFLRCLILCSHSSV*back to top mRNA from alignment at P-lacustris_contig1006:1794..3036+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1006.154.1 ID=mRNA_P-lacustris_contig1006.154.1|Name=mRNA_P-lacustris_contig1006.154.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1243bp|location=Sequence derived from alignment at P-lacustris_contig1006:1794..3036+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1006:1794..3036+ >mRNA_P-lacustris_contig1006.154.1 ID=mRNA_P-lacustris_contig1006.154.1|Name=mRNA_P-lacustris_contig1006.154.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=300bp|location=Sequence derived from alignment at P-lacustris_contig1006:1794..3036+ (Pleurocladia lacustris SAG_25_93)back to top |