mRNA_P-lacustris_contig1005.148.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1005.148.1
Unique NamemRNA_P-lacustris_contig1005.148.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1005.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1005contigP-lacustris_contig1005:1479..2190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1005.148.1prot_P-lacustris_contig1005.148.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1005 1483..2153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.6516697-UTR-P-lacustris_contig1005:1478..14821622815271.6516697-UTR-P-lacustris_contig1005:1478..1482Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1005 1479..1482 +
1693493442.065472-UTR-P-lacustris_contig1005:1478..14821693493442.065472-UTR-P-lacustris_contig1005:1478..1482Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1005 1479..1482 +
1622815272.0526052-UTR-P-lacustris_contig1005:2153..21901622815272.0526052-UTR-P-lacustris_contig1005:2153..2190Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1005 2154..2190 +
1693493442.0933979-UTR-P-lacustris_contig1005:2153..21901693493442.0933979-UTR-P-lacustris_contig1005:2153..2190Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1005 2154..2190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.9694161-CDS-P-lacustris_contig1005:1482..15651622815271.9694161-CDS-P-lacustris_contig1005:1482..1565Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1005 1483..1565 +
1693493442.0741415-CDS-P-lacustris_contig1005:1482..15651693493442.0741415-CDS-P-lacustris_contig1005:1482..1565Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1005 1483..1565 +
1622815272.041137-CDS-P-lacustris_contig1005:2044..21531622815272.041137-CDS-P-lacustris_contig1005:2044..2153Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1005 2045..2153 +
1693493442.0823376-CDS-P-lacustris_contig1005:2044..21531693493442.0823376-CDS-P-lacustris_contig1005:2044..2153Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1005 2045..2153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1005.148.1

>prot_P-lacustris_contig1005.148.1 ID=prot_P-lacustris_contig1005.148.1|Name=mRNA_P-lacustris_contig1005.148.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=64bp
MKLETVRVVSEPLLDTSSVIPNYTTKFDFTIVYSNALRVDSVLGSSSFGG
RCGATANRTFCYS*
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mRNA from alignment at P-lacustris_contig1005:1479..2190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1005.148.1 ID=mRNA_P-lacustris_contig1005.148.1|Name=mRNA_P-lacustris_contig1005.148.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=712bp|location=Sequence derived from alignment at P-lacustris_contig1005:1479..2190+ (Pleurocladia lacustris SAG_25_93)
CAGCATGAAATTGGAGACGGTGCGTGTGGTTTCAGAGCCATTGCTCGACA
CGTCGTCGGTGATCCCGAACTACACCACCAAGTTCGACAACAAGTTGTGC
AATACATGTCAGATAATCGTGATAACAGCGACCTACGGATATACAGAAGG
CATCAACGTCGAATATCTCTTTTGCTTCTGGCATGACACCTTTACCTACA
ATTCTTATGATGACTACCTCAACAAAATGTCATCACCATACACGTACATG
GGCCAACCGGAAATCACAGCTGTATCCGCGCTTTATGGGAAACAAGTGCA
CGTTCACTTCAACGACTCCACTTTGCCTCCTCCACATTTTGCAGCCACTG
ATGACATCCACTTCCGTTATACACAAATGTCTCGCCATCACGACACTTTT
CACCTAATTGTGCCGAATCCGGTCGTTCAACCCAACCCCCCCGTTTCAGG
TGCTACGCAACCTTCAGCGTCATGAACGACGAAGTTGCGGACCATCCTCG
TGACGAACCATTCTGCCGTCACAGGCATTGTCAGCACAAAGGACTTTTCG
GTCGCTACCGAACGTCCTTCACAATTGTGTACTCCAATGCCTTAAGGGTC
GATTCTGTTCTGGGTAGCTCCTCTTTCGGTGGGCGGTGTGGTGCAACGGC
AAACCGCACTTTCTGTTATTCGTAGTGCATCTCTCCATCGCCGGTGTATG
TATGTATATAGT
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Coding sequence (CDS) from alignment at P-lacustris_contig1005:1479..2190+

>mRNA_P-lacustris_contig1005.148.1 ID=mRNA_P-lacustris_contig1005.148.1|Name=mRNA_P-lacustris_contig1005.148.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=384bp|location=Sequence derived from alignment at P-lacustris_contig1005:1479..2190+ (Pleurocladia lacustris SAG_25_93)
ATGAAATTGGAGACGGTGCGTGTGGTTTCAGAGCCATTGCTCGACACGTC
GTCGGTGATCCCGAACTACACCACCAAGTTCGAATGAAATTGGAGACGGT
GCGTGTGGTTTCAGAGCCATTGCTCGACACGTCGTCGGTGATCCCGAACT
ACACCACCAAGTTCGACTTCACAATTGTGTACTCCAATGCCTTAAGGGTC
GATTCTGTTCTGGGTAGCTCCTCTTTCGGTGGGCGGTGTGGTGCAACGGC
AAACCGCACTTTCTGTTATTCGTAGCTTCACAATTGTGTACTCCAATGCC
TTAAGGGTCGATTCTGTTCTGGGTAGCTCCTCTTTCGGTGGGCGGTGTGG
TGCAACGGCAAACCGCACTTTCTGTTATTCGTAG
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