Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 233 |
| Cds size | 192 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815271.6516697-UTR-P-lacustris_contig1005:1478..1482 | 1622815271.6516697-UTR-P-lacustris_contig1005:1478..1482 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1005 1479..1482 + |
| 1693493442.065472-UTR-P-lacustris_contig1005:1478..1482 | 1693493442.065472-UTR-P-lacustris_contig1005:1478..1482 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1005 1479..1482 + |
| 1622815272.0526052-UTR-P-lacustris_contig1005:2153..2190 | 1622815272.0526052-UTR-P-lacustris_contig1005:2153..2190 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1005 2154..2190 + |
| 1693493442.0933979-UTR-P-lacustris_contig1005:2153..2190 | 1693493442.0933979-UTR-P-lacustris_contig1005:2153..2190 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1005 2154..2190 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815271.9694161-CDS-P-lacustris_contig1005:1482..1565 | 1622815271.9694161-CDS-P-lacustris_contig1005:1482..1565 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1005 1483..1565 + |
| 1693493442.0741415-CDS-P-lacustris_contig1005:1482..1565 | 1693493442.0741415-CDS-P-lacustris_contig1005:1482..1565 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1005 1483..1565 + |
| 1622815272.041137-CDS-P-lacustris_contig1005:2044..2153 | 1622815272.041137-CDS-P-lacustris_contig1005:2044..2153 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1005 2045..2153 + |
| 1693493442.0823376-CDS-P-lacustris_contig1005:2044..2153 | 1693493442.0823376-CDS-P-lacustris_contig1005:2044..2153 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1005 2045..2153 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1005.148.1 >prot_P-lacustris_contig1005.148.1 ID=prot_P-lacustris_contig1005.148.1|Name=mRNA_P-lacustris_contig1005.148.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=64bp
MKLETVRVVSEPLLDTSSVIPNYTTKFDFTIVYSNALRVDSVLGSSSFGG
RCGATANRTFCYS* back to topmRNA from alignment at P-lacustris_contig1005:1479..2190+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1005.148.1 ID=mRNA_P-lacustris_contig1005.148.1|Name=mRNA_P-lacustris_contig1005.148.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=712bp|location=Sequence derived from alignment at P-lacustris_contig1005:1479..2190+ (Pleurocladia lacustris SAG_25_93)
CAGCATGAAATTGGAGACGGTGCGTGTGGTTTCAGAGCCATTGCTCGACA
CGTCGTCGGTGATCCCGAACTACACCACCAAGTTCGACAACAAGTTGTGC
AATACATGTCAGATAATCGTGATAACAGCGACCTACGGATATACAGAAGG
CATCAACGTCGAATATCTCTTTTGCTTCTGGCATGACACCTTTACCTACA
ATTCTTATGATGACTACCTCAACAAAATGTCATCACCATACACGTACATG
GGCCAACCGGAAATCACAGCTGTATCCGCGCTTTATGGGAAACAAGTGCA
CGTTCACTTCAACGACTCCACTTTGCCTCCTCCACATTTTGCAGCCACTG
ATGACATCCACTTCCGTTATACACAAATGTCTCGCCATCACGACACTTTT
CACCTAATTGTGCCGAATCCGGTCGTTCAACCCAACCCCCCCGTTTCAGG
TGCTACGCAACCTTCAGCGTCATGAACGACGAAGTTGCGGACCATCCTCG
TGACGAACCATTCTGCCGTCACAGGCATTGTCAGCACAAAGGACTTTTCG
GTCGCTACCGAACGTCCTTCACAATTGTGTACTCCAATGCCTTAAGGGTC
GATTCTGTTCTGGGTAGCTCCTCTTTCGGTGGGCGGTGTGGTGCAACGGC
AAACCGCACTTTCTGTTATTCGTAGTGCATCTCTCCATCGCCGGTGTATG
TATGTATATAGT back to topCoding sequence (CDS) from alignment at P-lacustris_contig1005:1479..2190+ >mRNA_P-lacustris_contig1005.148.1 ID=mRNA_P-lacustris_contig1005.148.1|Name=mRNA_P-lacustris_contig1005.148.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=384bp|location=Sequence derived from alignment at P-lacustris_contig1005:1479..2190+ (Pleurocladia lacustris SAG_25_93)
ATGAAATTGGAGACGGTGCGTGTGGTTTCAGAGCCATTGCTCGACACGTC
GTCGGTGATCCCGAACTACACCACCAAGTTCGAATGAAATTGGAGACGGT
GCGTGTGGTTTCAGAGCCATTGCTCGACACGTCGTCGGTGATCCCGAACT
ACACCACCAAGTTCGACTTCACAATTGTGTACTCCAATGCCTTAAGGGTC
GATTCTGTTCTGGGTAGCTCCTCTTTCGGTGGGCGGTGTGGTGCAACGGC
AAACCGCACTTTCTGTTATTCGTAGCTTCACAATTGTGTACTCCAATGCC
TTAAGGGTCGATTCTGTTCTGGGTAGCTCCTCTTTCGGTGGGCGGTGTGG
TGCAACGGCAAACCGCACTTTCTGTTATTCGTAG back to top
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