mRNA_P-lacustris_contig1003.144.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1003.144.1
Unique NamemRNA_P-lacustris_contig1003.144.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1003.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1003contigP-lacustris_contig1003:65871..66577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size707
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1003.144.1prot_P-lacustris_contig1003.144.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1003 66100..66501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.0197601-UTR-P-lacustris_contig1003:65870..660991622815270.0197601-UTR-P-lacustris_contig1003:65870..66099Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 65871..66099 +
1693493440.9772654-UTR-P-lacustris_contig1003:65870..660991693493440.9772654-UTR-P-lacustris_contig1003:65870..66099Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 65871..66099 +
1622815270.0533204-UTR-P-lacustris_contig1003:66501..665771622815270.0533204-UTR-P-lacustris_contig1003:66501..66577Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 66502..66577 +
1693493441.00298-UTR-P-lacustris_contig1003:66501..665771693493441.00298-UTR-P-lacustris_contig1003:66501..66577Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 66502..66577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.037952-CDS-P-lacustris_contig1003:66099..665011622815270.037952-CDS-P-lacustris_contig1003:66099..66501Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 66100..66501 +
1693493440.993254-CDS-P-lacustris_contig1003:66099..665011693493440.993254-CDS-P-lacustris_contig1003:66099..66501Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 66100..66501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1003.144.1

>prot_P-lacustris_contig1003.144.1 ID=prot_P-lacustris_contig1003.144.1|Name=mRNA_P-lacustris_contig1003.144.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=134bp
MRLIEEVLGRAWGELQIRQEREQQDEAWHAFAASPPGRGGRSYQDRSGAG
GRGGDSSGKRNWANKERRHQQDPSPPYGPWGGSPPQYEIHEQQHQLPAAH
QGGGWGRERHSVGEVPVGEEVVRRRGAMEGEIT*
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mRNA from alignment at P-lacustris_contig1003:65871..66577+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1003.144.1 ID=mRNA_P-lacustris_contig1003.144.1|Name=mRNA_P-lacustris_contig1003.144.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=707bp|location=Sequence derived from alignment at P-lacustris_contig1003:65871..66577+ (Pleurocladia lacustris SAG_25_93)
TCAGTTGCGCTCAAGGCGAGCCTAAGGAAGCAGTACAACGAATTCAGGAT
GTTGCGGGAAGAGACCCCAGTGCAGTGCATTAGTCGATTCTCCTGGATGC
GCACACAGCTAGAAACACATGGACACGTAGAGAATGAACTAGATGCGTGC
CAACACCTTGTCCGCAACCTGTTGCCCGAGTACGACCCCCAGGTCGCTCA
CCTCATCATGAGGGACGATCTGTGTATGTATGAGGCTGATCGAGGAAGTG
CTTGGTCGAGCCTGGGGAGAACTGCAGATCCGGCAGGAGCGGGAGCAGCA
GGATGAGGCGTGGCACGCCTTCGCCGCGTCGCCCCCTGGCCGGGGCGGTA
GGAGTTATCAAGATAGGTCCGGGGCTGGAGGCCGCGGCGGCGATTCGAGT
GGAAAAAGGAACTGGGCAAACAAGGAGCGTCGCCACCAGCAAGACCCTTC
GCCTCCCTACGGACCCTGGGGAGGTTCGCCTCCTCAATATGAGATACATG
AACAGCAACATCAACTCCCGGCCGCACATCAGGGTGGCGGCTGGGGAAGG
GAACGTCACAGCGTGGGCGAGGTTCCCGTGGGAGAGGAGGTCGTCCGCCG
CCGTGGAGCGATGGAAGGAGAAATAACATGAGGGGTGAACAAGCATCCCA
TCCTCACCGGTCGCATTCATCGGGCGGTATACAGCAGCAGTGGTGGTACC
CACAGGC
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Coding sequence (CDS) from alignment at P-lacustris_contig1003:65871..66577+

>mRNA_P-lacustris_contig1003.144.1 ID=mRNA_P-lacustris_contig1003.144.1|Name=mRNA_P-lacustris_contig1003.144.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=804bp|location=Sequence derived from alignment at P-lacustris_contig1003:65871..66577+ (Pleurocladia lacustris SAG_25_93)
ATGAGGCTGATCGAGGAAGTGCTTGGTCGAGCCTGGGGAGAACTGCAGAT
CCGGCAGGAGCGGGAGCAGCAGGATGAGGCGTGGCACGCCTTCGCCGCGT
CGCCCCCTGGCCGGGGCGGTAGGAGTTATCAAGATAGGTCCGGGGCTGGA
GGCCGCGGCGGCGATTCGAGTGGAAAAAGGAACTGGGCAAACAAGGAGCG
TCGCCACCAGCAAGACCCTTCGCCTCCCTACGGACCCTGGGGAGGTTCGC
CTCCTCAATATGAGATACATGAACAGCAACATCAACTCCCGGCCGCACAT
CAGGGTGGCGGCTGGGGAAGGGAACGTCACAGCGTGGGCGAGGTTCCCGT
GGGAGAGGAGGTCGTCCGCCGCCGTGGAGCGATGGAAGGAGAAATAACAT
GAATGAGGCTGATCGAGGAAGTGCTTGGTCGAGCCTGGGGAGAACTGCAG
ATCCGGCAGGAGCGGGAGCAGCAGGATGAGGCGTGGCACGCCTTCGCCGC
GTCGCCCCCTGGCCGGGGCGGTAGGAGTTATCAAGATAGGTCCGGGGCTG
GAGGCCGCGGCGGCGATTCGAGTGGAAAAAGGAACTGGGCAAACAAGGAG
CGTCGCCACCAGCAAGACCCTTCGCCTCCCTACGGACCCTGGGGAGGTTC
GCCTCCTCAATATGAGATACATGAACAGCAACATCAACTCCCGGCCGCAC
ATCAGGGTGGCGGCTGGGGAAGGGAACGTCACAGCGTGGGCGAGGTTCCC
GTGGGAGAGGAGGTCGTCCGCCGCCGTGGAGCGATGGAAGGAGAAATAAC
ATGA
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