Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 707 |
| Cds size | 402 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815270.0197601-UTR-P-lacustris_contig1003:65870..66099 | 1622815270.0197601-UTR-P-lacustris_contig1003:65870..66099 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1003 65871..66099 + |
| 1693493440.9772654-UTR-P-lacustris_contig1003:65870..66099 | 1693493440.9772654-UTR-P-lacustris_contig1003:65870..66099 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1003 65871..66099 + |
| 1622815270.0533204-UTR-P-lacustris_contig1003:66501..66577 | 1622815270.0533204-UTR-P-lacustris_contig1003:66501..66577 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1003 66502..66577 + |
| 1693493441.00298-UTR-P-lacustris_contig1003:66501..66577 | 1693493441.00298-UTR-P-lacustris_contig1003:66501..66577 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1003 66502..66577 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815270.037952-CDS-P-lacustris_contig1003:66099..66501 | 1622815270.037952-CDS-P-lacustris_contig1003:66099..66501 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1003 66100..66501 + |
| 1693493440.993254-CDS-P-lacustris_contig1003:66099..66501 | 1693493440.993254-CDS-P-lacustris_contig1003:66099..66501 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1003 66100..66501 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1003.144.1 >prot_P-lacustris_contig1003.144.1 ID=prot_P-lacustris_contig1003.144.1|Name=mRNA_P-lacustris_contig1003.144.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=134bp
MRLIEEVLGRAWGELQIRQEREQQDEAWHAFAASPPGRGGRSYQDRSGAG
GRGGDSSGKRNWANKERRHQQDPSPPYGPWGGSPPQYEIHEQQHQLPAAH
QGGGWGRERHSVGEVPVGEEVVRRRGAMEGEIT* back to topmRNA from alignment at P-lacustris_contig1003:65871..66577+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1003.144.1 ID=mRNA_P-lacustris_contig1003.144.1|Name=mRNA_P-lacustris_contig1003.144.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=707bp|location=Sequence derived from alignment at P-lacustris_contig1003:65871..66577+ (Pleurocladia lacustris SAG_25_93)
TCAGTTGCGCTCAAGGCGAGCCTAAGGAAGCAGTACAACGAATTCAGGAT
GTTGCGGGAAGAGACCCCAGTGCAGTGCATTAGTCGATTCTCCTGGATGC
GCACACAGCTAGAAACACATGGACACGTAGAGAATGAACTAGATGCGTGC
CAACACCTTGTCCGCAACCTGTTGCCCGAGTACGACCCCCAGGTCGCTCA
CCTCATCATGAGGGACGATCTGTGTATGTATGAGGCTGATCGAGGAAGTG
CTTGGTCGAGCCTGGGGAGAACTGCAGATCCGGCAGGAGCGGGAGCAGCA
GGATGAGGCGTGGCACGCCTTCGCCGCGTCGCCCCCTGGCCGGGGCGGTA
GGAGTTATCAAGATAGGTCCGGGGCTGGAGGCCGCGGCGGCGATTCGAGT
GGAAAAAGGAACTGGGCAAACAAGGAGCGTCGCCACCAGCAAGACCCTTC
GCCTCCCTACGGACCCTGGGGAGGTTCGCCTCCTCAATATGAGATACATG
AACAGCAACATCAACTCCCGGCCGCACATCAGGGTGGCGGCTGGGGAAGG
GAACGTCACAGCGTGGGCGAGGTTCCCGTGGGAGAGGAGGTCGTCCGCCG
CCGTGGAGCGATGGAAGGAGAAATAACATGAGGGGTGAACAAGCATCCCA
TCCTCACCGGTCGCATTCATCGGGCGGTATACAGCAGCAGTGGTGGTACC
CACAGGC back to topCoding sequence (CDS) from alignment at P-lacustris_contig1003:65871..66577+ >mRNA_P-lacustris_contig1003.144.1 ID=mRNA_P-lacustris_contig1003.144.1|Name=mRNA_P-lacustris_contig1003.144.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=804bp|location=Sequence derived from alignment at P-lacustris_contig1003:65871..66577+ (Pleurocladia lacustris SAG_25_93)
ATGAGGCTGATCGAGGAAGTGCTTGGTCGAGCCTGGGGAGAACTGCAGAT
CCGGCAGGAGCGGGAGCAGCAGGATGAGGCGTGGCACGCCTTCGCCGCGT
CGCCCCCTGGCCGGGGCGGTAGGAGTTATCAAGATAGGTCCGGGGCTGGA
GGCCGCGGCGGCGATTCGAGTGGAAAAAGGAACTGGGCAAACAAGGAGCG
TCGCCACCAGCAAGACCCTTCGCCTCCCTACGGACCCTGGGGAGGTTCGC
CTCCTCAATATGAGATACATGAACAGCAACATCAACTCCCGGCCGCACAT
CAGGGTGGCGGCTGGGGAAGGGAACGTCACAGCGTGGGCGAGGTTCCCGT
GGGAGAGGAGGTCGTCCGCCGCCGTGGAGCGATGGAAGGAGAAATAACAT
GAATGAGGCTGATCGAGGAAGTGCTTGGTCGAGCCTGGGGAGAACTGCAG
ATCCGGCAGGAGCGGGAGCAGCAGGATGAGGCGTGGCACGCCTTCGCCGC
GTCGCCCCCTGGCCGGGGCGGTAGGAGTTATCAAGATAGGTCCGGGGCTG
GAGGCCGCGGCGGCGATTCGAGTGGAAAAAGGAACTGGGCAAACAAGGAG
CGTCGCCACCAGCAAGACCCTTCGCCTCCCTACGGACCCTGGGGAGGTTC
GCCTCCTCAATATGAGATACATGAACAGCAACATCAACTCCCGGCCGCAC
ATCAGGGTGGCGGCTGGGGAAGGGAACGTCACAGCGTGGGCGAGGTTCCC
GTGGGAGAGGAGGTCGTCCGCCGCCGTGGAGCGATGGAAGGAGAAATAAC
ATGA back to top
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