mRNA_P-lacustris_contig1003.143.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1003.143.1
Unique NamemRNA_P-lacustris_contig1003.143.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: A0A6H5L6C6_9PHAE (IPPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C6_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 9.790e-92
Identity = 189/358 (52.79%), Postives = 227/358 (63.41%), Query Frame = 1 
Query:   22 PAGGAASGKGQXXXXXXXXXXXXKGTSVAKEDDMDDFAWMPSDERMCVGDGLPKTRTVLQADIVFWLGDLNYRIAEEIPDEDVFEMLKKDDLETLRRLDQLTIARNS--GTAFEEFQEGPLCFPPSYKYIPGTK----EFDNRRVLPLMPEKKVRCPSWCDRVLYSVGMQSGSSVRRLGLDKYWSSGPLLSDHMPVSALFRTSLACAPQITLIETDIEVEPISPRRAAAEAAFDSSPFARVVLEPPALMLVLDQTPLLSAVVEITNTGGMQGNYHVCEDSVPSWMSLDGNERGELDPGEKVKIGIVIDVAEAEAAAEKDSKGGPRQPYDRPAACAVLRVEVDGGGSGTMLPVVCNLDD 1077
            PAGG +SGKG+            KGT  A+E ++DDFAWMPSDE M  G  LPKT+TVLQADIVFW+GDLNYRI EE PD++VFEML+ DDLETLRR+   +    +  G        GP   P   +  P  +    E   R+         V    W  R   +  +   S+ R +G      S P    H  VSALFRTSLACAPQ T+ E D++VEP+SPRR A+ AA   SPFARVVLEPP L+L+LDQTP LSAV EI+NTGG++G +HVC+DS+P W+SLDG+E GEL+PGEKV+I IVID AE                  RPAACAVLR+EVDGGGSGTMLPVVCNL D
Sbjct:  463 PAGGVSSGKGEIDGSGSEAE---KGTRPAEEVEVDDFAWMPSDEGMSAG--LPKTKTVLQADIVFWIGDLNYRITEETPDQEVFEMLQNDDLETLRRVWFGSADHRACVGDGVPRVPGGPSLLPAILQVHPRHQGIRSEASRRKRSDARRGATVFSTRWGCR---AATLFDDSASRGIGAPAL--SCPTTCLH--VSALFRTSLACAPQKTVAEPDVDVEPLSPRRTASIAASKLSPFARVVLEPPTLVLILDQTPSLSAVTEISNTGGIKGAFHVCKDSLPGWISLDGSELGELEPGEKVEITIVIDAAEXXXXXXXXXXXXXXXXXHRPAACAVLRIEVDGGGSGTMLPVVCNLGD 808
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: D8LL08_ECTSI (IPPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL08_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 2.840e-74
Identity = 127/179 (70.95%), Postives = 147/179 (82.12%), Query Frame = 1 
Query:   91 KGTSVAKEDDMDDFAWMPSDERMCVGDGLPKTRTVLQADIVFWLGDLNYRIAEEIPDEDVFEMLKKDDLETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTKEFDNRRVLPLMPEKKVRCPSWCDRVLYSVGMQSGSSVRRLGLDKYWSSGPLLSDHMPVSALFRTSLACAP 627
            KG   A++ ++DDFAWMPSDE M  G  LPKT+TVLQAD+VFW+GDLNYRI EE PD++VFEML+ DDLETL  LDQLTIAR SGTAF+EFQEGPLCFPPSYKYIPGTKE+D R      PEKKVRCPSWCDRVLY++GMQ G SVRRLGL++YWSSGPL+SDHMP   + ++S    P
Sbjct:  532 KGARPAEDVEVDDFAWMPSDEGMSAG--LPKTKTVLQADVVFWIGDLNYRITEETPDQEVFEMLQNDDLETLSGLDQLTIARASGTAFQEFQEGPLCFPPSYKYIPGTKEYDQR------PEKKVRCPSWCDRVLYAMGMQGGDSVRRLGLERYWSSGPLVSDHMPGEEVAQSSFHGVP 702
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: A0A835Z928_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z928_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.110e-36
Identity = 114/353 (32.29%), Postives = 167/353 (47.31%), Query Frame = 1 
Query:  166 GDGLPKTRTVLQADIVFWLGDLNYRIAEEIPDEDVFEMLKKDDLETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTKEFDNRRVLPLMPEKKVRCPSWCDRVLYSVG-MQSGSSVRRLGLDKYWSSGPLLSDHMPVSALFRT---------------------------------------SLACAPQITLIETDIEVEPISPRRAAAEAAFDSSPFARV----VLEPPALMLVLD-----QTPLLSAVVEITNTGGMQGN------YHVCEDSVPSWMSLDGNERGELDPGEKVKIGIV-IDVAEAEAAAEKDSKGGPRQPYDRPAACAVLRVEVDG----GGSG 1044
            GD    T  +L  D+V WLGD+NYRI   +  E+V  M+   + E LR LDQL+    +G AF +F EG L F P+YK I GT++FD      L PEKK+RCPSWCDR+L+S   + +   V+R+ L+ YWSSGP +SDH PVSALF                                         SLA   +++L  +      +SP   +  AA  ++  A +    ++  P ++ V D      T L   ++++   G + G       YHVCE S P W+ L G   G L+  +    G++ +D+  ++      + GG   P     ACA+L + +      GGSG
Sbjct:  364 GDSGGGTIGILDHDVVVWLGDMNYRIGGTVTSEEVGRMVAAGETEALRELDQLSTEMAAGRAFPQFFEGRLSFDPTYKLIRGTRDFD------LRPEKKMRCPSWCDRILWSAPHVCNAGPVQRMSLENYWSSGPYVSDHAPVSALFALTLAYMDNPQQQDRLLXXXXXXXXXXXXXADKLKREWQEWSLAQVEELSLAHSTQSTLCLSPPLTSGYAAVMATATAALASLRIVAAPGVLTVQDIERTAVTSLFVQLIDVPPAGAVAGGGDVPLAYHVCESSRPPWIQLFGAS-GTLNAPDTASDGLIEVDIDPSKIEFRPRANGGGYLP-----ACAMLVITISDVRTDGGSG 704
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: A0A7I6N0L2_9STRA (Putative inositol polyphosphate 5-phosphatase (Fragment) n=1 Tax=Lagenidium giganteum TaxID=4803 RepID=A0A7I6N0L2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.650e-25
Identity = 62/143 (43.36%), Postives = 83/143 (58.04%), Query Frame = 1 
Query:  193 VLQADIVFWLGDLNYRIAEEIPDEDVFEMLKKDDLETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTKEFDNRRVLPLMPEKKVRCPSWCDRVLYS------VGMQSGSSVRRLGLDKYWSSGPLLSDHMPVSALF 603
            +L  D VFWLGDLNYRI +++  E+ F+M +  DL  L + DQL I R  G  F  F+EGPL FPP+YK+  GT +++ R      PEKK+R P+WCDR+L+       V +Q  ++V  L L          SDH PV A F
Sbjct:  184 ILNHDFVFWLGDLNYRILDDVSTEECFQMAESGDLHELVQRDQLLIERKRGNVFHGFEEGPLSFPPTYKFQAGTSQYEKR------PEKKLRAPAWCDRILWKAKTPAHVTLQHYNAVMALDL----------SDHKPVHAFF 310
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: A0A7M3S7J5_9STRA (Putative inositol polyphosphate 5-phosphatase (Fragment) n=1 Tax=Globisporangium nunn TaxID=82942 RepID=A0A7M3S7J5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.890e-25
Identity = 65/143 (45.45%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:  193 VLQADIVFWLGDLNYRIAEEIPDEDVFEMLKKDDLETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTKEFDNRRVLPLMPEKKVRCPSWCDRVLYS------VGMQSGSSVRRLGLDKYWSSGPLLSDHMPVSALF 603
            +L  D VFWLGDLNYRI EE+P E VF+  +    + L RLDQL I R  G  F  F+EG + FPP+YKY  GT  ++ R      PEKK+R P+WCDR+L+       V  Q+ ++VR L L          SDH PV A F
Sbjct:  145 ILNHDFVFWLGDLNYRINEEVPVEVVFQHAESGMFKELLRLDQLNIERKRGAVFRGFEEGAITFPPTYKYQAGTTVYEKR------PEKKLRAPAWCDRILWRAKNPDHVVQQNYTAVRTLDL----------SDHKPVQASF 271
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: A0A7S4D643_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D643_HETAK)

HSP 1 Score: 114 bits (284), Expect = 3.540e-24
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 1 
Query:  193 VLQADIVFWLGDLNYRIAEEIPDEDVFEMLKKDDLETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTKEFDNRRVLPLMPEKKVRCPSWCDRVLYSVGMQSGSSVRRLGLDKYWSSGPL-LSDHMPVSALFRTSL 615
            ++  D+VFW+GDLNYRI   +P E V E +   DL  LR LDQL   R +G AF  F+E PL F P+YKY PGT  +D R      PEKK R P+WCDRVL+    +  SS+ +L    Y     L +SDH PV A F  +L
Sbjct:   10 IMDHDVVFWMGDLNYRIDMALPKEAVDEKVDAGDLAYLRDLDQLNQGRAAGRAFAGFEEAPLTFAPTYKYQPGTDAYDRR------PEKKQRAPAWCDRVLWWA--KDKSSITQLS---YGRCAQLKMSDHKPVGAEFAAAL 140
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: A0A1E7EW08_9STRA (DNase I-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EW08_9STRA)

HSP 1 Score: 117 bits (294), Expect = 8.510e-24
Identity = 86/254 (33.86%), Postives = 130/254 (51.18%), Query Frame = 1 
Query:  190 TVLQADIVFWLGDLNYRIAEEIPDEDVFEMLKKDDLETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTKEFDNRRVLPLMPEKKVRCPSWCDRVLYSVGMQSGSSVRRLGLDKYWSSGPLLSDHMPVSALFRTSLACAPQITLIETDIEV-EPISPRRAAAEAAFDSSPFARVVLEPPAL---MLVLDQTPLLSAVVEITNTGGMQGNY---------HVCEDSVPSWMSLDGNERGELDPGEKVKI 912
            ++   D++FWLGDLNYRI E +P E V E+   + L+ LR LDQL I R  G +F+ F+EG L F P+YKY PGT  ++ R      PEKK+R P+WCDR+L+ +       V++L  ++  S  P  SDH PV +  R        +T+ +  +E  E I     +    F++     V L+   L    +  DQ+  L   +++TNTG +   +         ++C+    SWM++     G L PGE   I
Sbjct:  228 SIADHDVIFWLGDLNYRIDESMPTEKVLELAVSNRLDPLRPLDQLNIERREGRSFQGFEEGALNFVPTYKYQPGTDIYEQR------PEKKLRAPAWCDRILW-MAQSDPQHVQQLTYNR--SETPNCSDHKPVYSTMR--------VTVKDVILERREAIYKELLSLLDRFENQSLPMVGLDTVELDFGPVRYDQSVTLP--IQVTNTGNVCAQFRFVPKLDENYLCK----SWMTVTPTY-GMLIPGEAAAI 457
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: A0A7M3S7J9_9STRA (Putative inositol polyphosphate 5-phosphatase (Fragment) n=1 Tax=Pythiogeton ramosum TaxID=1217586 RepID=A0A7M3S7J9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 9.760e-24
Identity = 59/139 (42.45%), Postives = 81/139 (58.27%), Query Frame = 1 
Query:  193 VLQADIVFWLGDLNYRIAEEIPDEDVFEMLKKDDLETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTKEFDNRRVLPLMPEKKVRCPSWCDRVLYSVGMQSGSSVRRLGLDKYWSSGPLL--SDHMPVSALF 603
            +L  D+VFW GDLNYRIA+ +  E+ F++      E L   +QL   R SG AF+ F+EG + FPP+YKY  GT  ++ R      PEKK+R P+WCDRVL+       S   +    + ++  P+L  SDH PV ALF
Sbjct:   61 ILNHDVVFWFGDLNYRIADGLTTEECFQLADARQFEKLLACEQLVRERRSGHAFQPFEEGVITFPPTYKYQQGTNIYERR------PEKKLRAPAWCDRVLWR------SKTPKQVTQRVYNHVPMLDISDHKPVHALF 187
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: A0A7R9U264_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U264_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.140e-23
Identity = 89/262 (33.97%), Postives = 131/262 (50.00%), Query Frame = 1 
Query:  193 VLQADIVFWLGDLNYRIAEEIPDEDVFEMLKKDD--LETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTK--EFDNRRVLPLMPEKKVRCPSWCDRVLYS------VGMQSGSSV-------------RRLGLDKYWS-SGPLLSDHMPVSALFRTSLACAPQITLIETDIEVEPISPR-----------RAAAEAAFDSSPFARVVLEPPALMLVLDQTPLLSAVV---EITNTGGMQGNYHVCEDSVPSWMSL 864
            VL  D+VFW+GDLNYRI E +  ++V++++   D  LE L  LDQL   R++G +F  F EG L F P+YKYIPG K   +DNR      PEKK+RCPSWCDRVL+       V     +SV               + L +Y +  G  +SDH+PV+A+F   +    Q   +E   E+  IS R           R +  A + S    R   +    +++  + P L+A+V   +    G     + +  +SVP+W+ L
Sbjct:   76 VLDHDLVFWMGDLNYRIVEGVELDEVYQLINSGDDGLEKLIELDQLNQERSAGRSFRGFHEGRLRFGPTYKYIPGEKPQRYDNR------PEKKMRCPSWCDRVLWRQPPGTMVSYDQFASVDPRPVRETNEAFRESVQLLQYRAVMGLAISDHVPVNAVFDAKVRKIDQQRRLEVCREI--ISERARSECRTIPLLRPSERAMWFSD--VRYEQDQQRSLMLHAEIPSLAAIVGGRDQAADGAPDVPFRISSNSVPAWLRL 327
[Close]
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Match: A0A7R9VEQ0_9STRA (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7R9VEQ0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.420e-23
Identity = 91/258 (35.27%), Postives = 130/258 (50.39%), Query Frame = 1 
Query:  205 DIVFWLGDLNYRIAEEIPDEDVFEMLKKDDLETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTKEFDNRRVLPLMPEKKVRCPSWCDRVLYSVGMQSGSSVRRLGLDKYWSSGPLLSDHMPVSALFRTSLACAPQITLIETDIEVEPISPRRAAAEAAFDSSPFARVVLEPPAL---MLVLDQTPLLSAVVEITNTGGMQGNYHVCE--DSVP---SWMSLDGNERGELDPGEK---VKIGIVIDVAEAEA 945
            D+ FW+GDLNYR+ E+IP E V E+ +K +LE L   DQL I R+ G  F+ F+EG L F P+YKY PGT  ++ R      P+KK+R P+WCDR+L+    Q  S V +L    Y  S   +SDH PV   F  ++    Q    E   EV  +  +       F++     V L+  +L    +  DQ   L   +++TNTG +   + +    D V     WM++     G L PGE+   +   I ID A A A
Sbjct:  359 DLAFWMGDLNYRVDEQIPTEKVIELSQKSELEELIANDQLNIERSQGRVFQGFEEGVLTFQPTYKYQPGTDLYEQR------PDKKLRAPAWCDRILWLA--QEPSHVTQLS---YKRSELNISDHKPVMGTFAITIKDVVQSKREEVYEEVMKLLDK-------FENQTLPMVGLDRISLDFGEVRYDQKVTLP--IKVTNTGKVVAQFRLVPKLDEVTLCKPWMTVSPTY-GMLIPGEQPATLNFTITIDNATAHA 595
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1003.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6C6_9PHAE9.790e-9252.79IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LL08_ECTSI2.840e-7470.95IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z928_9STRA4.110e-3632.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7I6N0L2_9STRA4.650e-2543.36Putative inositol polyphosphate 5-phosphatase (Fra... [more]
A0A7M3S7J5_9STRA4.890e-2545.45Putative inositol polyphosphate 5-phosphatase (Fra... [more]
A0A7S4D643_HETAK3.540e-2446.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1E7EW08_9STRA8.510e-2433.86DNase I-like protein n=1 Tax=Fragilariopsis cylind... [more]
A0A7M3S7J9_9STRA9.760e-2442.45Putative inositol polyphosphate 5-phosphatase (Fra... [more]
A0A7R9U264_9STRA1.140e-2333.97Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9VEQ0_9STRA1.420e-2335.27Hypothetical protein n=2 Tax=Eupodiscales TaxID=33... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1003contigP-lacustris_contig1003:56537..63207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score264.6
Seed ortholog evalue6e-68
Seed eggNOG ortholog2880.D8LL08
KEGG rclassRC00010,RC00078
KEGG koko:K01099,ko:K01974,ko:K12819,ko:K13566,ko:K20279
KEGG ReactionR00269,R00348,R04404,R09827
KEGG Pathwayko00250,ko00562,ko01100,ko03040,ko04070,map00250,map00562,map01100,map03040,map04070
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol dephosphorylation
EggNOG OGsCOG5411@1,KOG0565@2759,KOG0566@2759
EC3.1.3.36,3.5.1.3,6.5.1.4
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04131
Exons6
Model size1993
Cds size966
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1003.143.1prot_P-lacustris_contig1003.143.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1003 58597..62300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.346977-UTR-P-lacustris_contig1003:56536..566301622815271.346977-UTR-P-lacustris_contig1003:56536..56630Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 56537..56630 +
1693493441.8327832-UTR-P-lacustris_contig1003:56536..566301693493441.8327832-UTR-P-lacustris_contig1003:56536..56630Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 56537..56630 +
1622815271.3597195-UTR-P-lacustris_contig1003:58570..585961622815271.3597195-UTR-P-lacustris_contig1003:58570..58596Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 58571..58596 +
1693493441.8507814-UTR-P-lacustris_contig1003:58570..585961693493441.8507814-UTR-P-lacustris_contig1003:58570..58596Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 58571..58596 +
1622815271.4274745-UTR-P-lacustris_contig1003:62300..632071622815271.4274745-UTR-P-lacustris_contig1003:62300..63207Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 62301..63207 +
1693493441.9231484-UTR-P-lacustris_contig1003:62300..632071693493441.9231484-UTR-P-lacustris_contig1003:62300..63207Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 62301..63207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815271.3711028-CDS-P-lacustris_contig1003:58596..586771622815271.3711028-CDS-P-lacustris_contig1003:58596..58677Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 58597..58677 +
1693493441.862162-CDS-P-lacustris_contig1003:58596..586771693493441.862162-CDS-P-lacustris_contig1003:58596..58677Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 58597..58677 +
1622815271.3825-CDS-P-lacustris_contig1003:59676..597871622815271.3825-CDS-P-lacustris_contig1003:59676..59787Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 59677..59787 +
1693493441.8720071-CDS-P-lacustris_contig1003:59676..597871693493441.8720071-CDS-P-lacustris_contig1003:59676..59787Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 59677..59787 +
1622815271.39358-CDS-P-lacustris_contig1003:60318..604551622815271.39358-CDS-P-lacustris_contig1003:60318..60455Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 60319..60455 +
1693493441.882783-CDS-P-lacustris_contig1003:60318..604551693493441.882783-CDS-P-lacustris_contig1003:60318..60455Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 60319..60455 +
1622815271.4057524-CDS-P-lacustris_contig1003:60816..609561622815271.4057524-CDS-P-lacustris_contig1003:60816..60956Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 60817..60956 +
1693493441.8933659-CDS-P-lacustris_contig1003:60816..609561693493441.8933659-CDS-P-lacustris_contig1003:60816..60956Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 60817..60956 +
1622815271.4187465-CDS-P-lacustris_contig1003:61803..623001622815271.4187465-CDS-P-lacustris_contig1003:61803..62300Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 61804..62300 +
1693493441.907911-CDS-P-lacustris_contig1003:61803..623001693493441.907911-CDS-P-lacustris_contig1003:61803..62300Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 61804..62300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1003.143.1

>prot_P-lacustris_contig1003.143.1 ID=prot_P-lacustris_contig1003.143.1|Name=mRNA_P-lacustris_contig1003.143.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=322bp
MDDFAWMPSDERMCVGDGLPKTRTVLQADIVFWLGDLNYRIAEEIPDEDV
FEMLKKDDLETLRRLDQLTIARNSGTAFEEFQEGPLCFPPSYKYIPGTKE
FDNRRVLPLMPEKKVRCPSWCDRVLYSVGMQSGSSVRRLGLDKYWSSGPL
LSDHMPVSALFRTSLACAPQITLIETDIEVEPISPRRAAAEAAFDSSPFA
RVVLEPPALMLVLDQTPLLSAVVEITNTGGMQGNYHVCEDSVPSWMSLDG
NERGELDPGEKVKIGIVIDVAEAEAAAEKDSKGGPRQPYDRPAACAVLRV
EVDGGGSGTMLPVVCNLDDDR*
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mRNA from alignment at P-lacustris_contig1003:56537..63207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1003.143.1 ID=mRNA_P-lacustris_contig1003.143.1|Name=mRNA_P-lacustris_contig1003.143.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6671bp|location=Sequence derived from alignment at P-lacustris_contig1003:56537..63207+ (Pleurocladia lacustris SAG_25_93)
GGAGGCGGAGGGGGAGGCCATCCTGCGGGAGGGGCTGCTTCTGGCAAGGG
CCAAGGGTCGGGGACCGACGGCAGCCAAAGTGGGGCTGGCAAAGGTGCTG
CTGTTGTACCACTTATAGCAGTTGTTGTTTTGTTGTTTGTTGTCTTCACA
TTCTCAGTCATATTCACTAATCAAATAAAATTTCACCAAGGGCCGGTAAA
AAACAAACGCTCCGAAAACTATAATTAAAATCAAAATTCAGAGGCGTTAT
TGGCCTGATTTGTGCGGTTTTGGGACTGCTGGTGGCGCAGAGGTCATGGG
GTGTCGAGACTCGGTCTCCAGGTTGGCCACACGTAGAAGGCTTGATTTTA
ATTCTAATTTTAATTGAGAAAGTCCCTCGGGCACTTTCTAAATTAAATTA
AAATTCAAGTGCGTGGTTCCATGATTATACGGTTAGGGCCAACTGGGCCA
ATCAGAACACTATTTTAATTCTAATTTTAATTTTCGGAGCTTCGTTTAGC
GTCGTTAACACCCGGCCTAATCCATCAGGATATCTATTATTCCGAGATGG
ATTGTTACTCATAGCTCGAATGGACGATACCAGCAGCCGTGTATGCCTGT
GTGTGTGTGTGCGCGCGCGCGTGTTGTCGTCCTATCAACTGGACATCAGG
AGTTGTAAGCAGGAGTAAACAGATGTGGCTTGAACACATACCAGTCCACG
TTAAAATATCAGTCATCAATCATCAAGTGAGATATTCTTCTACTATTTTC
ACTACAATCTAATAATTTTTCACTAACCTATCATGAGATCTACTGACGTG
TACATGAATTCTCACTCATTTAATTTTTATGACGTGATTCTCACTTATCT
AATGGTTTTTTTAGCACAAAATCTTCTAGCTAGTACTGATAGCTCAAGGA
TCATCGCTTAACACACCCCTAGAGCCGACTTGTAGCTATCCAAGATATTG
TCCTCCTGTTGTTGTTTTGTTCGACTCTGGCTGTTGACGCGATGCGATGA
CTGCTGGAGATCTTGGGCGTATTCTACGATGATCAATTTGGGAGATGCAG
CACACAAAAACGATATCCTGGCTTCGGCTGGGCTTGAATTACCCCTTTTG
CTGTCCTCCGCTCTTTGCATCAGTGGCCCCTCAGGTTCAGGCGAGGGCTT
GCGTGAAGTTCAGATAGTGTGCGTCTTTTGTCTATTGCAAGGCTTTGTAG
AGAGGTCTACTTTCCTATTGTTTTTGGCTTCGCCCAGGATTCTTCTTCGA
ACTTTTGTGCCCTTCCGGGGACTTTGATTTTTCGCGCTGACACTGACGAC
TTTTCGTTGGTCAGCGGTCAACGCGCGCGCGCGCGCGCACACACACACAC
ACCCACACACACCCACACACACACACACACACACACACACACACACACAC
ACACGGCTGCTGGTGCCGTCCATTCGAGCTAGCAGTGACAATCCGTCTCG
GAATAGAAATCTCGGAACACATACATACATGAGAAAGAAAGATAAACCAA
GTTTTTTTTTTCATCATCTCGCGGCTGCTGATGCCAGACGCTTAATGTCG
AGAGATCTTACAGGTCGGGGAGACCGTATTGCCACACACACAAAAACCGA
AGACTTCAACAGGTGGGGCTTCAGTTGAGGCCGGGAGCTACCCACCCGGG
CTATTATTCCAATACCCGTGCTGAGCACTGGCTCTTGTATTATGTTGAGG
GTAAGGAACGAACTTCGACCTTGGTGGTCGAAGATAGGCTAGTCCAATGT
CAGGCACAAACTAAATTCAACCGTAGGTATTGAGTTTTTGCATCGAGGAG
TTTCAATACTCGTCAGCCCGTTATGTGGAGGACGCACGCCCGTTCGTCTT
CCTCCTCGTACGCACTTACATCTCGTTGTAGGGCCTCAAATATCAGTCCC
ATGTTGTCAGCAACTTCGTGTTCTTGTCCACGGCAAGGTGGTCTCATGGA
ACGCAGTAATACGGCATATGCATGAACAATTAGTCGGCAAACACGGTCGG
ACTGAACGACGGAATTGGACGGTCGCATCGGTAGGCACGAGTGTCGCCAA
GGAGGATGACATGGACGACTTCGCGTGGATGCCGAGCGATGAACGGATGT
GCGTCGGTGATGGTCTGCCCAAGACCAGAACGGTGCTGCAGGTGAGGCCG
GCAGATATGACGAGACATATATCACGCACCATGCCATAACACAGCACCTT
GTTTCCCTCGATTGATTTGGACTCGTTTTTTTGTGAACCTGTTTAACCTT
CTCGTTATTGATTCAAAAGACATTTCGCTGCTATCGCGTTCGAATAAAGG
ACGTCTTCTTGCATTCGACTGTCTGTGATTGTGTCGTGTGTAGGCTGACT
CACTGACAAGAGTTTACGAGCGGTGGCCTATACGTTGAGTAGTGGATTTT
TTGGTGTGCAATCAGAGTGTTCGGCCGTATAGGCGCACGGCCTGAACCCC
GATGTTCTGAAGTTTATGACGAGGTGAATGATGGTATGGTAGGGTCTAGC
TGGGCGACGTCTTAAATAGGCCAAGTCCTTCTAGTTAGGGTGATGTCAGA
TACGACACTGCGGAGATTTTCAAGTCGTGGAGTCTAGCCCGCGTCATGTT
GGATGGGTGCGTGAAAGAAGCCGCCGTTAACCACGTTACTTGTGGAGTAA
AACTCACGAAACAATAGAAAAGGTCATGGGAACGGGGAAGGGGCCCGGAA
ATACGAGGACGGCGTCACCGGGCCTGTAACCCTAACCCTAACCCTAACCC
AAGCATCACCCACTCTTGTTCAGTGCCCCCTACCTGACTCATCGATGTTG
CGTGCTACACTTTCGGCTTTCCCCCGAGCTGGGACTGGTTGGTATCGCTA
TCCCCGTACAGTTTGTTCACAGGTTGTTGAGCGTTTTGCTGGCCGAGTCT
TGTTTTGTTGTGTCGTGCTTTGATTTGATGCCTCGACCTTGTCCTGCCGT
TTGTTTCTCGTTGCATGGTAGTAGGATATGCAGCAAACTTTGCAAACTTC
AACTTGGACGGGTACGCCAAGGTTTCACATATTTCGTGCACAGATTGTTC
CGCCTAACGTTATCGGAAAACGTAAGATAGCGCCTGTCTATTGCTTACAC
CGGATCCCGCTAACTGACTCATGTGCTGTTGTATCGGCAGGCCGATATCG
TGTTCTGGCTTGGTGACCTGAATTATCGAATCGCAGAGGAGATCCCTGAC
GAGGACGTCTTCGAAATGCTCAAGAAAGACGACCTGGAGACTTTAAGGCG
GGTTGCATAATTGCGCGCTTTCTCCTCGCGGTTGTGGTGTTATCAAGTTC
ACGGGGTAATGCATTTTGGTCAATACACCACAGTACTCGCGCCTTGCACA
AATGGCCATTGAGCTGCGGCGAATCGTCCAGTTGCCAGCAGCAGAATGCT
GAAGGCTTCTTACGTTTGACCTATTGTGCACAATCTGTAGGCGCACGCAT
CCTCACTCGACAACGATTGTTTGTGTAGGATTTATGAGAACCTTTTGTGG
GGCATGGCATCGCAGTCACCAAAAGCACATCCGCTTCCACTTTGGCAGGC
GTCGCCATTTCCTTTTAGAGGCCGGCGCAACCGATCTCCCCTACAATAGT
ATTATGGTCGGCGTTTGTTCCGTGGTGCACGATGTACATGTATGAAATCT
GGCCGAACCTCGCCATGTCGGCGCCCACATCCCCTGCAGCATTCCCCCGT
ATCACTCACACCGTGTCTGATTTCATCGTTTACTGTTACCGCCACCGTTC
CTTACCCTATCGTGACAACATTGTGCAGAGAGCTGGACCAGTTGACCATT
GCGCGTAACTCGGGGACGGCATTTGAAGAGTTTCAGGAGGGCCCGCTTTG
CTTCCCCCCTTCCTACAAGTACATCCCCGGTACTAAGGAGTTCGACAATA
GGCGAGTGCTTCCCTTGATGTGTCGTGCGTCGTGCCAATCTTTACACCTG
TTTCCCCTTTTCAGCGTCGATATTGTGGTCGTGTTGTCTTGTTTTTCTCT
CGTCTCTGACTCCTGACGGCAACGGGCGGTGCCGTCGCGGCAGCAACTAA
CTTATCTTCCGTGTCTTACGCGAGAGACAAGACGCTCTGTCTGGCCGTTC
GTTCAATTTCATGGCACGGCAAAGGATCTAGCGACCAAGTCTTCGCGCCT
TGTTTATGGTATGTTGCGATACGTGATGTGTTAAAGGCCTGGTTGGTCAC
CTGCGCTGACGCTCTCGAGTATTGATCGAGTCGGTTAATCACTACTGCCC
GGACGTCTGTGTTTGCGCGGTTTGAGCCAGGCCGGAAAAAAAGGTCCGAT
GTCCGTCGTGGTGCGACCGCGTGCTCTACTCGGTGGGTATGCAGAGCGGC
AGCTCTGTTCGACGACTCGGCCTCGACAAATATTGGAGCTCAGGGCCGCT
TCTATCGGACCATATGCCTGGTGAGACATCAATCTGTAGTCGTTACCTCC
GTGCGCCGCGCCGTGCCAAAGTTTCAGTTAGTTCCAAGACGGGTTGGGTG
CAAGTGTCTGGGGGAGCAAAGTCGTTCCGATTCATTACTTTCTACGCAAA
GAAGTAGGAGACTTTTTCAGCGCTGCGGTACAGCGGTTCGCAAGCACACA
GAATAAATGGTTGTTGTTCGAATGCGAGGGCGAAAATGTTTTTTTTTGCC
GTCGGGTACTACGATGCCTGGAGCACAAGTGACAGCGTGGGGTTTGTATG
TGCTTCAGTATTCCTCTGATTCGCGTTTCCGATGACCGCAGTTTGTCGGA
AAGATTTCGCGAACCGTTGTTCCTGCTTGTGCACGTTGTCTGTCTGTCTG
TCCTTCGCTGCCCTTGATGAATTGTACGTCTGTTGTTTACAGCAACTGAG
CCTGGCTGCGCATTTCCCTCATCCCGCCATACTCGCCTCATTTGCGCAAT
AGTTCGTAAATTTGGCTCTACCGGATTTCTCCCTATTGCTATGGTGACTC
ATGACTCCGTGCTAATCATTGTCGGCCACGAAGGCTCCTGAAAAGTCCGT
TACGGTTACAATTGGCCGAGCATGGCCTGCTGTTTCCCGTTTCACACCTG
CAGCTGTAATTATCGGAAAAATCTCACATTTGCTTTGTCGTTCTCAGCAT
ATCATAGTCTCCTCTCTTCACACCGAAGTTTGCGCTCTTGTTTGTGTGCT
GGGAAGAATTGAGAACGCTACCCATTCTCATTCCACTCCGATGCCGGCTG
CTTACCGTGGGTATGCGCCGTTGCCGTGTTTTACATCCTGCAAACAATTA
TGCGAACGTACGCGCAGTTAGCGCGCTATTCCGCACATCGCTAGCATGCG
CCCCGCAGATCACCTTGATCGAAACGGATATCGAGGTGGAGCCCATTAGC
CCGCGCAGAGCAGCCGCCGAGGCTGCGTTCGACTCGTCCCCGTTTGCCCG
TGTGGTGCTGGAGCCTCCGGCCCTCATGTTGGTTCTTGACCAGACGCCGC
TCTTGTCAGCAGTGGTGGAGATAACCAACACCGGAGGAATGCAGGGAAAC
TACCACGTGTGCGAAGATAGTGTACCCTCCTGGATGAGCCTCGATGGTAA
TGAGCGCGGGGAGCTTGACCCGGGGGAGAAGGTGAAGATCGGTATTGTCA
TCGATGTGGCTGAAGCTGAGGCTGCTGCTGAAAAGGACTCGAAAGGCGGG
CCTCGACAACCATATGATCGACCGGCTGCCTGCGCGGTGTTACGGGTCGA
GGTAGACGGAGGAGGTTCGGGGACTATGCTCCCGGTAGTTTGTAATCTCG
ATGATGATAGGTGAATGCGGGCAGTCGGTGGCTCGGTGCAGCGCGTTGTT
TTGCATGCTTTTCGCGCTGATCCCGTGAGTTGAGGAGCTTGGTCGGGGCG
CGCATATATGATGTGTATTCGTAGCCTTTGGGGTGTAGCGTGGTGAGTGT
ATTGTATCAGAAAACGTACGAAGGGCTGGGCTTAACATAAGATTGGCAGG
TGGACACATAGTGTCAGTTACTTTCCGTTGGGCCGGGTCGAACCTGTCAC
CGTTGGGTAGCTGATACCGTGCTCACGGAACGAACCTATCGCCGTCACTT
GGAACCGATAGGAGATTGATCGCGCTCCGTAGATGGGGCTTGACCTTATC
GAGCATCGCTAGCAGAGTTTCGTAGCGGATGGGGAAGCAGGGGAAGCAGT
GCTGCGCCTTCTCGATTTCGTCAACCCCGATTGTTATTGGTCTCCGTCGA
TGCATGGGTCGGTGTAGTGCGTGTTGTGTGCAGAAATAAATCTTTACATT
GACAAGGCTCTATCCAACTATTCCGGGCCACCACTCCCGATGTTTTGTGA
AACCTCGTCCCTTTGATCAGAAATTTTAGTTCGGTTTCTACTCTGTGCTG
ATTTCAGGGGGCTTGAGTATCGGACGGGTGTCAAATACGATCGGATATCA
CATTGGATGGTTGAAAGGAAAGACAATCCACCCTAGAGGGGTAGGGGATG
ATTGTTTTTCGTCCCCTAGTTGGATAATCCCGATACTTCTGTACGTATGT
GGTTTGTACCGTATGTGTGTGACGATTTTCGTCATTGTTGCACGTCGACC
ACTACTGGCTGCTATCTATACAATGGAAAAGCGATCCCTGCTTGTTGCTG
CCCAATTGCGTCCTCCTCTTTGTTTGGCTGGTGTGCCATGGACTACTCTG
CAGTATAACCTTTTTGTTGAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1003:56537..63207+

>mRNA_P-lacustris_contig1003.143.1 ID=mRNA_P-lacustris_contig1003.143.1|Name=mRNA_P-lacustris_contig1003.143.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1932bp|location=Sequence derived from alignment at P-lacustris_contig1003:56537..63207+ (Pleurocladia lacustris SAG_25_93)
ATGGACGACTTCGCGTGGATGCCGAGCGATGAACGGATGTGCGTCGGTGA
TGGTCTGCCCAAGACCAGAACGGTGCTGCAGATGGACGACTTCGCGTGGA
TGCCGAGCGATGAACGGATGTGCGTCGGTGATGGTCTGCCCAAGACCAGA
ACGGTGCTGCAGGCCGATATCGTGTTCTGGCTTGGTGACCTGAATTATCG
AATCGCAGAGGAGATCCCTGACGAGGACGTCTTCGAAATGCTCAAGAAAG
ACGACCTGGAGACTTTAAGGCGGGCCGATATCGTGTTCTGGCTTGGTGAC
CTGAATTATCGAATCGCAGAGGAGATCCCTGACGAGGACGTCTTCGAAAT
GCTCAAGAAAGACGACCTGGAGACTTTAAGGCGGCTGGACCAGTTGACCA
TTGCGCGTAACTCGGGGACGGCATTTGAAGAGTTTCAGGAGGGCCCGCTT
TGCTTCCCCCCTTCCTACAAGTACATCCCCGGTACTAAGGAGTTCGACAA
TAGGCGAGTGCTTCCCTTGATCTGGACCAGTTGACCATTGCGCGTAACTC
GGGGACGGCATTTGAAGAGTTTCAGGAGGGCCCGCTTTGCTTCCCCCCTT
CCTACAAGTACATCCCCGGTACTAAGGAGTTCGACAATAGGCGAGTGCTT
CCCTTGATGCCGGAAAAAAAGGTCCGATGTCCGTCGTGGTGCGACCGCGT
GCTCTACTCGGTGGGTATGCAGAGCGGCAGCTCTGTTCGACGACTCGGCC
TCGACAAATATTGGAGCTCAGGGCCGCTTCTATCGGACCATATGCCTGGC
CGGAAAAAAAGGTCCGATGTCCGTCGTGGTGCGACCGCGTGCTCTACTCG
GTGGGTATGCAGAGCGGCAGCTCTGTTCGACGACTCGGCCTCGACAAATA
TTGGAGCTCAGGGCCGCTTCTATCGGACCATATGCCTGTTAGCGCGCTAT
TCCGCACATCGCTAGCATGCGCCCCGCAGATCACCTTGATCGAAACGGAT
ATCGAGGTGGAGCCCATTAGCCCGCGCAGAGCAGCCGCCGAGGCTGCGTT
CGACTCGTCCCCGTTTGCCCGTGTGGTGCTGGAGCCTCCGGCCCTCATGT
TGGTTCTTGACCAGACGCCGCTCTTGTCAGCAGTGGTGGAGATAACCAAC
ACCGGAGGAATGCAGGGAAACTACCACGTGTGCGAAGATAGTGTACCCTC
CTGGATGAGCCTCGATGGTAATGAGCGCGGGGAGCTTGACCCGGGGGAGA
AGGTGAAGATCGGTATTGTCATCGATGTGGCTGAAGCTGAGGCTGCTGCT
GAAAAGGACTCGAAAGGCGGGCCTCGACAACCATATGATCGACCGGCTGC
CTGCGCGGTGTTACGGGTCGAGGTAGACGGAGGAGGTTCGGGGACTATGC
TCCCGGTAGTTTGTAATCTCGATGATGATAGGTGATTAGCGCGCTATTCC
GCACATCGCTAGCATGCGCCCCGCAGATCACCTTGATCGAAACGGATATC
GAGGTGGAGCCCATTAGCCCGCGCAGAGCAGCCGCCGAGGCTGCGTTCGA
CTCGTCCCCGTTTGCCCGTGTGGTGCTGGAGCCTCCGGCCCTCATGTTGG
TTCTTGACCAGACGCCGCTCTTGTCAGCAGTGGTGGAGATAACCAACACC
GGAGGAATGCAGGGAAACTACCACGTGTGCGAAGATAGTGTACCCTCCTG
GATGAGCCTCGATGGTAATGAGCGCGGGGAGCTTGACCCGGGGGAGAAGG
TGAAGATCGGTATTGTCATCGATGTGGCTGAAGCTGAGGCTGCTGCTGAA
AAGGACTCGAAAGGCGGGCCTCGACAACCATATGATCGACCGGCTGCCTG
CGCGGTGTTACGGGTCGAGGTAGACGGAGGAGGTTCGGGGACTATGCTCC
CGGTAGTTTGTAATCTCGATGATGATAGGTGA
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