mRNA_P-lacustris_contig1003.139.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-lacustris_contig1003.139.1
Unique Name	mRNA_P-lacustris_contig1003.139.1
Type	mRNA
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)

Homology

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: D8LL05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL05_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 7.970e-89
Identity = 148/162 (91.36%), Postives = 158/162 (97.53%), Query Frame = 2

Query:   35 MAGGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQEAKA 520
            MAGGQQQQSIDLSVLSLEQLNQMKTQHEE+VQ LSGNF+KLRDAQARFSESISAVEALGSK E KEILVPLTQSLYVPGRI++ADKMMVDVGTGYYVQKDQQKTAEFLGRKK++VTTNLESLRNAIDVKRKNLEAIV+VM+RKIG+IE KRAEFKSS+EAKA
Sbjct:    1 MAGGQQQQSIDLSVLSLEQLNQMKTQHEEEVQTLSGNFMKLRDAQARFSESISAVEALGSKTEDKEILVPLTQSLYVPGRIVEADKMMVDVGTGYYVQKDQQKTAEFLGRKKDMVTTNLESLRNAIDVKRKNLEAIVMVMRRKIGDIETKRAEFKSSEEAKA 162

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A835ZFR4_9STRA (Prefoldin subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFR4_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.120e-48
Identity = 85/152 (55.92%), Postives = 118/152 (77.63%), Query Frame = 2

Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQ 508
            Q+ +DLS LSLEQLNQ+KTQH+E+VQ L+ N+  LRD  AR+ E+ SAVEA+G K EG+EILVPLTQSLYVPG++I+ DK +VD+GTGYY +K Q++T EFL RK  +V  NL SLR  I++KRK  E + +VM++++ +IE  R+++ + Q
Sbjct:    7 QREVDLSSLSLEQLNQLKTQHQEEVQTLTANYAALRDGLARYQEAKSAVEAMGRKAEGREILVPLTQSLYVPGKVIEGDKFLVDIGTGYYAEKSQRETEEFLTRKAGMVEANLASLREVIEMKRKAFETLTMVMRQRLSQIEENRSKYMAQQ 158

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A7S3NIR8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIR8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.480e-35
Identity = 73/149 (48.99%), Postives = 107/149 (71.81%), Query Frame = 2

Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEA--LGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAE 493
            QQ ID+S LSLEQLN MK +HEE VQ LS     ++ A+ RF ES + ++   L  + EGKE+LVPLTQSLYV G ++DAD+++VD+GTGY++QK  Q   E + RK ++VT N++S+   ++ K++NL AIV VM+ K+ +I+ ++AE
Sbjct:    5 QQQIDISKLSLEQLNSMKQEHEESVQELSSQLETMKLAEGRFRESRNTLDIIKLDDQAEGKEMLVPLTQSLYVSGNVLDADQVLVDIGTGYFLQKSVQGAQEMIDRKLKVVTQNMDSIHTVVNQKQENLNAIVTVMQYKMQQIQKQKAE 153

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A2P6NP58_9EUKA (Prefoldin subunit 5 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NP58_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 8.160e-34
Identity = 66/142 (46.48%), Postives = 108/142 (76.06%), Query Frame = 2

Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIE 478
            QQ ID+S LSLEQLN  K Q EE+VQ LS ++ +L+ A ARF++S  A+ A+ ++ EGK +LVPLT SL+VPG++ + +++++D+GTGYYV K  ++ ++F  RK +++  N + +  A+ VKRKNLE++++VM++KIG+++
Sbjct:    6 QQGIDISQLSLEQLNTFKQQFEEEVQVLSNSWQQLKLASARFTDSKDALSAIKTENEGKAMLVPLTTSLFVPGQLTNTEQVLIDIGTGYYVTKPVKQASDFFDRKIKMINDNADQVAQAVSVKRKNLESVLLVMQQKIGQMQ 147

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: F0YDJ5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDJ5_AURAN)

HSP 1 Score: 129 bits (323), Expect = 8.270e-32
Identity = 64/150 (42.67%), Postives = 102/150 (68.00%), Query Frame = 2

Query:   62 IDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQE 511
            +D+S LSL+QLNQ+K+QHE+++  L      L+ A+ RF +S  A+ A+    EGK +LVPLTQSLYVPG++ D D ++V++GTGYY++K +      + RK ++V  N E++   +  K +N EAIV++M+ K+ +I+ K+AEF   Q+
Sbjct:    1 MDISTLSLDQLNQLKSQHEQELNQLRERHSSLKQAEGRFRQSKDALAAISKDDEGKSMLVPLTQSLYVPGKLCDVDSLLVELGTGYYLEKKKDDADAMIDRKIKLVADNAENITTVVAQKTRNHEAIVMMMQHKMAQIQEKKAEFDRQQD 150

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A7S2C3Z7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Z7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 9.870e-32
Identity = 64/154 (41.56%), Postives = 108/154 (70.13%), Query Frame = 2

Query:   41 GGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKS 502
            GG   + IDLS + + QLN +KT HE+++  L+GN+  L+ AQ++ + ++  +  +GS+ EG+EILVPLT SLYVPG I D +K+++DVGTGY+V+K   K  +F+ RK ++VT N + ++N    K+KNLE IV++M++++  ++  + + K+
Sbjct:    5 GGGGGREIDLSQMDINQLNDLKTSHEQEIDQLTGNWRTLKHAQSKLNTAVVCLNEVGSQ-EGREILVPLTPSLYVPGTICDTNKVLLDVGTGYFVEKSLAKAKDFVDRKNKMVTVNADQIQNVTQQKQKNLETIVMIMRQRMAMMQQAQEDAKA 157

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A068S4K0_9FUNG (Prefoldin-domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S4K0_9FUNG)

HSP 1 Score: 124 bits (312), Expect = 3.160e-30
Identity = 71/143 (49.65%), Postives = 99/143 (69.23%), Query Frame = 2

Query:   41 GGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGS-KVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKI 466
            G QQQQ+++++ L L  L Q+KTQ EE++  L+ ++ KLR AQARFS+   +VE+L S K + K ILVPLT SLYVPG++ D +K++VDVGTGYYV+K       F   K+E V  NLE L+  I+ K+ +L AIV VM+ K+
Sbjct:    2 GSQQQQTVNITDLDLPSLQQVKTQLEEELSHLTQSYGKLRGAQARFSDCADSVESLKSEKADDKTILVPLTSSLYVPGKLSDVEKVIVDVGTGYYVEKSLDGATSFYKTKEEYVKQNLEKLQETINGKQSSLRAIVNVMQDKV 144

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: L8HDI9_ACACA (Prefoldin, alpha subunit n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDI9_ACACA)

HSP 1 Score: 124 bits (310), Expect = 5.570e-30
Identity = 64/144 (44.44%), Postives = 98/144 (68.06%), Query Frame = 2

Query:   41 GGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGE 472
            GGQQ Q I ++ LSLEQL+ +K Q EE+ Q L+ +  KL+ A  RF +S  ++ AL  +  G+E+L PLT SLYV G++ + + +M+D+GTGYY+++  Q+  E++ RK  +V  N E L+ A+  KRKNLEAI+ VM+ K+ +
Sbjct:    5 GGQQGQPIPITSLSLEQLSNLKQQFEEEAQTLAASLQKLKTAGQRFLDSKDSLAALTPETNGREVLAPLTSSLYVKGKLTNVEAVMIDIGTGYYIERTPQQAQEYVDRKLGLVQENAEKLQQALLTKRKNLEAIIGVMQEKMAQ 148

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A6U1PSU8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PSU8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.060e-29
Identity = 64/152 (42.11%), Postives = 105/152 (69.08%), Query Frame = 2

Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQ 508
            ++ IDLS LS+EQL+ +K Q++E++  L+ +   L  A+ +F E+  A+  +    EG++I+VPLT SLYVPGR+ + +K+MVD+GTGYY +K+  +  EF+ RK ++++ N++SL + I  K KN + +  VM++K+ +I   R EFKSSQ
Sbjct:    7 EREIDLSGLSIEQLSNLKQQNDEEMTQLNESLGSLNAAKLKFLEAKHALTEIPPNGEGRQIMVPLTGSLYVPGRLHEPNKVMVDIGTGYYAEKNSTQAKEFIDRKVKMISDNIDSLSSLITTKHKNADVVAYVMQQKLEQINANRNEFKSSQ 158

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BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Match: A0A7S3ZUY5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUY5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.310e-29
Identity = 64/153 (41.83%), Postives = 100/153 (65.36%), Query Frame = 2

Query:   53 QQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSESISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKDQQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENKRAEFKSSQE 511
            QQ +D+S +SLEQLN  K Q E +++ L      L+ A+ RF +S  A+ A+    EG+ +LVPLTQSLYVPG + D D+++V++GTGYY++K QQ   E L RK   V+ N E +   +  K++N +AIV +M+ K+ +I+ +R+E +  Q+
Sbjct:    3 QQQVDISAMSLEQLNTYKGQFENEIKQLHARHSGLKQAEGRFRQSKDALAAISKDDEGRRMLVPLTQSLYVPGELGDPDQLLVELGTGYYIEKTQQGATELLDRKIGTVSKNAEDINTVVASKQQNYDAIVQMMQVKMAQIQERRSELQRQQD 155

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig1003.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D8LL05_ECTSI	7.970e-89	91.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835ZFR4_9STRA	3.120e-48	55.92	Prefoldin subunit-domain-containing protein n=1 Ta...	[more]
A0A7S3NIR8_9STRA	2.480e-35	48.99	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A2P6NP58_9EUKA	8.160e-34	46.48	Prefoldin subunit 5 n=1 Tax=Planoprotostelium fung...	[more]
F0YDJ5_AURAN	8.270e-32	42.67	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A7S2C3Z7_9STRA	9.870e-32	41.56	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A068S4K0_9FUNG	3.160e-30	49.65	Prefoldin-domain-containing protein n=2 Tax=Lichth...	[more]
L8HDI9_ACACA	5.570e-30	44.44	Prefoldin, alpha subunit n=1 Tax=Acanthamoeba cast...	[more]
A0A6U1PSU8_9STRA	1.060e-29	42.11	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S3ZUY5_9STRA	1.310e-29	41.83	Hypothetical protein n=1 Tax=Pelagomonas calceolat...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	279.6
Seed ortholog evalue	9.1e-73
Seed eggNOG ortholog	2880.D8LL05
Preferred name	PFDN5
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01881,ko:K03678,ko:K04797,ko:K09504
KEGG Reaction	R03661
KEGG Pathway	ko00970,ko03018,ko05203,map00970,map03018,map05203
KEGG Module	M00359,M00360,M00391
Hectar predicted targeting category	other localisation
GOs	GO:0001654,GO:0003674,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0007021,GO:0007275,GO:0007423,GO:0008092,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0015631,GO:0016043,GO:0016272,GO:0019219,GO:0019222,GO:0022607,GO:0023051,GO:0023057,GO:0030111,GO:0030178,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032153,GO:0032501,GO:0032502,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034622,GO:0043010,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051286,GO:0060041,GO:0060255,GO:0060828,GO:0065003,GO:0065007,GO:0071840,GO:0080090,GO:0090090,GO:0140110,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.	sister chromatid segregation
EggNOG OGs	COG1730@1,KOG3048@2759
Ec32 ortholog description	Prefoldin
Ec32 ortholog	Ec-11_006250.1
EC	6.1.1.15
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03019,ko03029,ko03110
Exons	5
Model size	1450
Cds size	489
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815270.5153325-UTR-P-lacustris_contig1003:22353..23280	1622815270.5153325-UTR-P-lacustris_contig1003:22353..23280	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1003 22354..23280 -
1693493441.3437378-UTR-P-lacustris_contig1003:22353..23280	1693493441.3437378-UTR-P-lacustris_contig1003:22353..23280	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1003 22354..23280 -
1622815270.5756397-UTR-P-lacustris_contig1003:25142..25147	1622815270.5756397-UTR-P-lacustris_contig1003:25142..25147	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1003 25143..25147 -
1693493441.3955953-UTR-P-lacustris_contig1003:25142..25147	1693493441.3955953-UTR-P-lacustris_contig1003:25142..25147	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1003 25143..25147 -
1622815270.5858126-UTR-P-lacustris_contig1003:27141..27170	1622815270.5858126-UTR-P-lacustris_contig1003:27141..27170	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1003 27142..27170 -
1693493441.4052558-UTR-P-lacustris_contig1003:27141..27170	1693493441.4052558-UTR-P-lacustris_contig1003:27141..27170	Pleurocladia lacustris SAG_25_93	UTR	P-lacustris_contig1003 27142..27170 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815270.5274773-CDS-P-lacustris_contig1003:23280..23436	1622815270.5274773-CDS-P-lacustris_contig1003:23280..23436	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1003 23281..23436 -
1693493441.354388-CDS-P-lacustris_contig1003:23280..23436	1693493441.354388-CDS-P-lacustris_contig1003:23280..23436	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1003 23281..23436 -
1622815270.5407057-CDS-P-lacustris_contig1003:23846..23975	1622815270.5407057-CDS-P-lacustris_contig1003:23846..23975	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1003 23847..23975 -
1693493441.3629103-CDS-P-lacustris_contig1003:23846..23975	1693493441.3629103-CDS-P-lacustris_contig1003:23846..23975	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1003 23847..23975 -
1622815270.550518-CDS-P-lacustris_contig1003:24309..24378	1622815270.550518-CDS-P-lacustris_contig1003:24309..24378	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1003 24310..24378 -
1693493441.3708243-CDS-P-lacustris_contig1003:24309..24378	1693493441.3708243-CDS-P-lacustris_contig1003:24309..24378	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1003 24310..24378 -
1622815270.5661533-CDS-P-lacustris_contig1003:25007..25142	1622815270.5661533-CDS-P-lacustris_contig1003:25007..25142	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1003 25008..25142 -
1693493441.3787212-CDS-P-lacustris_contig1003:25007..25142	1693493441.3787212-CDS-P-lacustris_contig1003:25007..25142	Pleurocladia lacustris SAG_25_93	CDS	P-lacustris_contig1003 25008..25142 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig1003.139.1	prot_P-lacustris_contig1003.139.1	Pleurocladia lacustris SAG_25_93	polypeptide	P-lacustris_contig1003 23281..25142 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-lacustris_contig1003:22354..27170-
coding sequence from alignment at P-lacustris_contig1003:22354..27170-

protein sequence of mRNA_P-lacustris_contig1003.139.1

>prot_P-lacustris_contig1003.139.1 ID=prot_P-lacustris_contig1003.139.1|Name=mRNA_P-lacustris_contig1003.139.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=163bp
MAGGQQQQSIDLSVLSLEQLNQMKTQHEEDVQALSGNFVKLRDAQARFSE
SISAVEALGSKVEGKEILVPLTQSLYVPGRIIDADKMMVDVGTGYYVQKD
QQKTAEFLGRKKEIVTTNLESLRNAIDVKRKNLEAIVVVMKRKIGEIENK
RAEFKSSQEAKA*

mRNA from alignment at P-lacustris_contig1003:22354..27170-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-lacustris_contig1003.139.1 ID=mRNA_P-lacustris_contig1003.139.1|Name=mRNA_P-lacustris_contig1003.139.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4817bp|location=Sequence derived from alignment at P-lacustris_contig1003:22354..27170- (Pleurocladia lacustris SAG_25_93)
CCGACCTGCGCGACCACGTCAGGAAGAAGGTGATATAATCTCAGCATCGT
CTATTGTTTGTAGGCTCGATGCCTGTGGCAACGCCATCCTTTTGCTAAGT
GGCGCTACCTACCTGTATTGCCCTAACCATCCACGAGACCTCAGTATGTC
GTATCTATCTCATCCAACGATCAATCGCCTTCGTCGTTCAACTTTGTTAT
TGATGGATTGGTATGGTACAAGTATGCTGGATCTCTCGTTCGTTGGTTCC
TCTGCAAGAAACGAGTAACTGCTGCTGTACATGATGATGACAGCCATCGA
GATCAGGCGGAAAAACACTTTTACACACAAGCAAGCCACCGCGTTACAGC
AGTAATACATTCGCAAATTCAGAGTCAGTCGCTCTGTCGATGTTCGAGTC
TTCGAGTGCATCTCACGACATGGATATCGACATTTTGGACATGCACATGG
CTACAGCAGTACAGCAGTTTAGCATCACGTTGCATTGACTACAATATCGT
ATACGACGCAAGAGCTACGTACCCCATTTGGCATTGGGCGGTTGCCTTGA
ACACTATCCACACAGAGCAGACTAGTACTGAGTGTGTGCGGAACTTACCT
TGGTGTGACTGAACGCCCACTTGGAACCTCGTGGCCAATTATAGTCCTTT
AAACTTTAACCTTCTGAGTCTTCAGGCAGAGAAAATGATCATTAAATTGA
TTATCTCCTTTTGTACATTTATGGAGGGGATGACGACAAAACAGCCCGAA
ACCAACACCCGTAGGAATTGTACAGCATATGAGAGAACGTCCACACGCGT
AGGTGACCACTCATACCAACCAAAGCTCGCACACAGAGTGACTCAGATGC
TACAGCGCTTCAGCGGTCAACTCGCTCGGCCGTTTGTACACAAAATCCAC
TTCGCAGCAGAATGAACTGATACACTTGCACACGCACCTAGTCAGCACAT
ACAGGGCACACCCCACACAAATCTGCTGCTGCTACTACTACTCTTGTGCT
ATACATCAATGTCGTGCACCACAGCAGCGGTAGCTTGCTTGCTGCTCAGG
TGCGGAAAATTCACGCTTGTGAAAGAGGAGCTGTAGTGAGCCCGAAGGCC
CATGCTTGGGGTTGAGAGCGGGGAGGCAGGGAAGTACAGAAGTGCTCTAT
GGGCCTGAGGGTCTTCAAACACGAAAATGATCATTTGAAGATAAAACAAC
TTTATAATTTGTTATTATACTGAATAAAGAGCAGTGACAGGCACCGGTAA
ATATGGGACAGAACGCCTAGCGCGCTCTTCCCTTGATTTTGTTCCCACTC
AACGTTGATTATATTACCCTTCGACACGCCACGAGTCTGCCGCGGATGCT
CGTTACGACCTCTGTGTAGCTTCTACCCTGCAGAAGTACACATTTGGCTC
GAAGCTGTACTTCTATCTACCTCTCCCGCATGTTTTTTTTTCTGGTTCAG
AAAAAAAGAGCCAAACCCAGAGGGGTTAATGTGGCATCGTGCGTCGAAGC
ATGTGGAGGCTCACGGCCATTATCTGCTAAGTAGACTTGTATGGAACAAG
AAGAAGGATTGACTTAGGTTGCTTGAGAGTAGTGCTGACGTCACCGAGAA
TAGTAACTTGTCGGAAAGCAAGTGACTAGAGATTCTAGAATGAGGTGTCT
CAGGATTGAGAGCGGTAGTATACGGGAGAGACAAAGTGCAAGATCTAAGG
TAGGCGGTCGTACGACATCGATACAAGCTTGTTACGTCGGCGTCTGTCAA
AAATTCTTCTATTGAAAAGTTGTCCGGTCACTGGATGTTTGTCGTAAATC
CGAGAAAGAACTTGTACGATGATGCACTGAATTGCACGACATACGAAAAT
CTAGTTCAGTACTTCGATGGTATGAAGGTATTGATCGATGTGTTCCAGCA
GTGCTACTGCACCATACATATTTCGGACGATAAATATCGCAACAAGCTCT
TCACATCCTGTTTACCGTGCGGTACAGCAAGCAACAAACAGACACATACA
TTCACGGGTGGACACAAAGACAGGCATCATGGCGGGAGGGCAGCAGCAGC
AGAGTATCGACCTGTCGGTGTTGTCGCTGGAGCAGCTGAACCAGATGAAG
ACGCAGCACGAGGAGGACGTGCAGGCTCTCTCGGGGAATTTTGTGAAACT
CAGAGACGCTCAGGTAAATGCAGGTCTTCATGTGATTGAAGCGTCAATAA
TACTCCAGTTGTATTATGGACTACAGTATGGGCTTGCGATCTACCCACAC
GACTTAGACTAGGGACGGTCAGGGTGTGCTAATTGGAATCATCTACTGTG
CTGCCACGGACTCTCAGGTGTGTGAAACTTGTCACGCTCTTTTTTATTTT
TGCTTTGCACCCAGTTTTAGTTTCAGCGCGGCTTGTAACCCCGACGAGTG
TGCATCAACCAGTGCGGGTCGGTATTTCCAGCGCGCCTGAAATTTCTGTT
GGCCTGCGGGCTGCTGCTGCAAGTGCTGCCACACGCACTCACATCGCGTG
CGTTAGATTCTGCCTGATGCCAGTTGCGAACATCTTTCAGTGCTGAGTTC
AATTCAACGCTTCCCATTCGTCGAAAAATCTAAAATTCTGCGTCCTGCCT
TCCTTCTCAGGGTTGACCAGACCGACCGCTGTCGTACCTGCTACCTTTAC
CTGTTGTGTTTCGTTTGTCTTCATATCTCCCCCCTCCTTCCTGCATGATT
GCTGCACTACGCCAATGCATAATCACTATAACACACTCCCTATCCCGCTG
CTTCCACTTCCTCCTTGATCCGTGGTGACTTATTTTCGTCAGGCACGATT
TTCTGAATCGATATCCGCGGTGGAGGCGTTGGGAAGCAAAGTGGAAGGCA
AGGAGATTCTGGTGAGATGAGACGGGGTCCATTCTTGGACGCAGTTTCAT
ATTGGTGTGTGTAGTGGAATGGAGTTAAGATACACCAGCAGCCTAGCCTA
ACTAAGGGTGCTATTTCCGTTCTCAAGGCATGCTGTCCTTCGCTTCGTTG
GAATCACCATTCCTGCACGTCGGCGGCACTTAGCCCCGTTGAGTTTGGTC
GATATGATGGGTTGCTTTCGATGTTGGTTGATTGTGGTGCACCCTCTCCC
CCCCAACGTCTTGACTCTGACACTTCGGTTGCTGCTGTTGCTTATGCTGT
TGCTGCTTGCACTGCTGCTTCTTGTGCTCTTCCTTTGGAATGAAGGTGCC
GTTAACCCAGTCGCTGTACGTGCCGGGGCGTATTATTGATGCGGACAAGA
TGATGGTGGACGTGGGAACGGGCTACTACGTGCAGAAGGACCAGCAGAAA
ACGGCAGAGTTCCTGGGGAGGAAAGTGAGTGCGATGTAGTGCGATATGGT
TCGGTGTTGCGGAGTAGATGAGCTGCAGGTATTTGCATCTACAACAGCAC
AACTATGTAGTGCGCAGTGTTTTCCTTGTATAGTGTACATTGCAGCCCAA
CGGGGGCGAGGAGGTAGCACCGGCGCTTACATGACCTGACAGCCGCCATC
AAGCCGGAGGAGCACGGTATTAAAATAGAAGAGTGTGCACTCCGTGGCGG
CCCTCCTCCCTCCCTCTCTGCCCCTCGAGAGGCCGTCGTGGTTTCTCTTT
GCCTGCCTCACAAGCATGCCCTCTTGCCCCCTCCTGAGGTATCAATCTAC
CCCCCACCGACGAACATATTGTCTTTGCACCCTTTCTTTCGTGCTTGCCA
CGAAAACGAACGCCTCCGTTTGACAATGTCTCAGAAAGAGATAGTGACAA
CCAACTTGGAGTCTCTACGCAACGCGATCGATGTCAAGCGCAAGAACCTG
GAGGCCATTGTCGTGGTCATGAAAAGAAAGATTGGGGAAATCGAGAACAA
ACGAGCGGAATTCAAGAGTAGCCAAGAGGCCAAGGCATGATGAGAACACG
AGGAGCGCCGCAGACTCCAAAATGTTGGGGTGGCGTCAGACATCGCAGGG
TTTAATTGAAATACTTAGGTTACGGGTGGCTGCCGGTGTACCTTACCTTA
CGAACTCTGGTGCCTGGTCGGTTTGGGTCACGAGAAGATGCCCCTTGACT
TCACCCGGATCGTTGTGACTAGCGAACGATCTTGCTCCCGCATGTGGAAT
ATATCTATATCGCAGCGAGTGGGAGCAGCAGTGCAGTGTAGCGTCGCCGT
ACCCTCCTAGGGCATGGTTTTGCGTGCTACAATAGCTCGCCCAAAGACCG
CCAGTTTCGGGTACAGATCATACTTGTAGCTTCGAGTGCTGGGAGGAGGG
ACGGAGAAAGCCACACAGAATGTGGAGGTGTGCGTCTCCATGTGTCGGAT
TCTTGTACAGTTTTTCAACGTGCTACTACATCAGCGATTCTAAACTAATG
TTAACCTGTATGCATGCGTTAGATGCGGCAGGCGTCGGTCATATTTCACG
ATGAAGGTTACGGTCAACTACTGTAGCCAGCTAGGCCAGCATCGTGATGG
CCGCTCATGATATACAGCAGATACCCGGATTCTCGTCGTGTTCGCGACAG
GCATCAAGTATGATCAAGAGGGTGACGTTTCGTGCGGGCCATCTCCCCGT
CGAAGTGTATGTTGTATGAGTGGAGAATATGTTAGGGTGGAGTTTTTCGT
TGTGTACACGCTGCCGATGCACCAAAGTACGTCGGTGTGGGATCTCAGGG
GGGTCGAGATGTAAAAATAGAAGCCTGCTAGCTCCTTATTTTACTCCAAT
TGCCCGGAACTCGTACGACGTTGTGATTCGCAGTAGGAGAAGAAAACCGA
TTCGACTAACGACACACATTCGATATGGGAAGAAAATGGTCCTCTGCCGA
GCAGCCGAGCCTGTCCT

Coding sequence (CDS) from alignment at P-lacustris_contig1003:22354..27170-

>mRNA_P-lacustris_contig1003.139.1 ID=mRNA_P-lacustris_contig1003.139.1|Name=mRNA_P-lacustris_contig1003.139.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=978bp|location=Sequence derived from alignment at P-lacustris_contig1003:22354..27170- (Pleurocladia lacustris SAG_25_93)
ATGGCGGGAGGGCAGCAGCAGCAGAGTATCGACCTGTCGGTGTTGTCGCT
GGAGCAGCTGAACCAGATGAAGACGCAGCACGAGGAGGACGTGCAGGCTC
TCTCGGGGAATTTTGTGAAACTCAGAGACGCTCAGATGGCGGGAGGGCAG
CAGCAGCAGAGTATCGACCTGTCGGTGTTGTCGCTGGAGCAGCTGAACCA
GATGAAGACGCAGCACGAGGAGGACGTGCAGGCTCTCTCGGGGAATTTTG
TGAAACTCAGAGACGCTCAGGCACGATTTTCTGAATCGATATCCGCGGTG
GAGGCGTTGGGAAGCAAAGTGGAAGGCAAGGAGATTCTGGCACGATTTTC
TGAATCGATATCCGCGGTGGAGGCGTTGGGAAGCAAAGTGGAAGGCAAGG
AGATTCTGGTGCCGTTAACCCAGTCGCTGTACGTGCCGGGGCGTATTATT
GATGCGGACAAGATGATGGTGGACGTGGGAACGGGCTACTACGTGCAGAA
GGACCAGCAGAAAACGGCAGAGTTCCTGGGGAGGAAAGTGCCGTTAACCC
AGTCGCTGTACGTGCCGGGGCGTATTATTGATGCGGACAAGATGATGGTG
GACGTGGGAACGGGCTACTACGTGCAGAAGGACCAGCAGAAAACGGCAGA
GTTCCTGGGGAGGAAAAAAGAGATAGTGACAACCAACTTGGAGTCTCTAC
GCAACGCGATCGATGTCAAGCGCAAGAACCTGGAGGCCATTGTCGTGGTC
ATGAAAAGAAAGATTGGGGAAATCGAGAACAAACGAGCGGAATTCAAGAG
TAGCCAAGAGGCCAAGGCATGAAAAGAGATAGTGACAACCAACTTGGAGT
CTCTACGCAACGCGATCGATGTCAAGCGCAAGAACCTGGAGGCCATTGTC
GTGGTCATGAAAAGAAAGATTGGGGAAATCGAGAACAAACGAGCGGAATT
CAAGAGTAGCCAAGAGGCCAAGGCATGA