mRNA_P-lacustris_contig1003.138.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1003.138.1
Unique NamemRNA_P-lacustris_contig1003.138.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1003.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1003contigP-lacustris_contig1003:20959..22263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1305
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1003.138.1prot_P-lacustris_contig1003.138.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1003 21308..21673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.4413915-UTR-P-lacustris_contig1003:20958..213071622815270.4413915-UTR-P-lacustris_contig1003:20958..21307Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 20959..21307 +
1693493441.3102612-UTR-P-lacustris_contig1003:20958..213071693493441.3102612-UTR-P-lacustris_contig1003:20958..21307Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 20959..21307 +
1622815270.4704442-UTR-P-lacustris_contig1003:21673..222631622815270.4704442-UTR-P-lacustris_contig1003:21673..22263Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 21674..22263 +
1693493441.3310108-UTR-P-lacustris_contig1003:21673..222631693493441.3310108-UTR-P-lacustris_contig1003:21673..22263Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1003 21674..22263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.4574656-CDS-P-lacustris_contig1003:21307..216731622815270.4574656-CDS-P-lacustris_contig1003:21307..21673Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 21308..21673 +
1693493441.3209288-CDS-P-lacustris_contig1003:21307..216731693493441.3209288-CDS-P-lacustris_contig1003:21307..21673Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1003 21308..21673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1003.138.1

>prot_P-lacustris_contig1003.138.1 ID=prot_P-lacustris_contig1003.138.1|Name=mRNA_P-lacustris_contig1003.138.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=122bp
MYQVVACLSHPNFRTASNFSRACLSPSAAYAAAASASGKIFVWDIARSSA
IASGGASIGGGADTDTVVASQMSVDTSLSPPSSVATVLQTHGVAASGCDW
CISMPNTLASCDSKGGLRVWG*
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mRNA from alignment at P-lacustris_contig1003:20959..22263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1003.138.1 ID=mRNA_P-lacustris_contig1003.138.1|Name=mRNA_P-lacustris_contig1003.138.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1305bp|location=Sequence derived from alignment at P-lacustris_contig1003:20959..22263+ (Pleurocladia lacustris SAG_25_93)
GTCAGAACCCGGCACTTTTCTGATTCTTCATTTCCCAACGAGGCGCGCGT
CGAGCAGGCCCATTCACCAGTCGTATCATGTCATAGGTACAGCACCCAGC
AACTGGTGATCTAAACTCGCTTCGTTTTCAGCAGTTTTGAGCAGTGTCCC
GTCTTTTTCGCGCCGTCTGATGTACTCTATGTACTCTGATGTACTCCAGG
TACGCTTTCCTTTCACGTACTCTACCCTCTTGTGTGTCGTGCTTGTTATT
GGTGTCTCCTTCTCTCTCCATGATTGCGTTTGCTATGCCGCCCTACCCCA
TTATCTTCACACTGTCTGACACTTGACTTTTCAGGTTGTAGATGCGCGGA
TGTACCAAGTGGTGGCATGTCTCAGCCACCCCAACTTCCGCACAGCGTCC
AACTTTTCCCGCGCCTGCCTCAGTCCCTCTGCCGCCTATGCCGCCGCCGC
CTCGGCTAGCGGTAAAATCTTCGTGTGGGACATAGCCCGCAGCAGCGCCA
TCGCCAGTGGTGGCGCTTCTATAGGTGGTGGGGCGGATACGGATACGGTT
GTAGCATCGCAGATGTCAGTAGACACATCGCTATCACCACCGTCGTCTGT
GGCGACGGTATTGCAGACTCACGGGGTGGCGGCGTCCGGGTGTGACTGGT
GCATCAGCATGCCGAACACGCTAGCGTCGTGCGATTCCAAGGGCGGACTG
AGAGTGTGGGGATAGCTAGGGAGCCAGCACCAGCCGAACTTAATGATTGC
CGTAGGGATCGACCGCATACGGTCTAGGCAGCTAGGACTTTTTTTCGACT
TGGGCATTCCTTCATTGCTAACCCGAACAAGTCGACTCAAGTCAAGTGAA
AGGCAAGATTATTTCATGATTGCGTAAGTGCTCGAGCAAAAGGTTTGAGG
CAAGGGTGGGGTGGCGGGGATCTTGCCATTGCGGCATTTTCAGGCATAGA
CTAGTCTGCAGAAAACGTCTTTAGTTTGTACCCGATGGGAGGTGATGCGA
TGTAGCTATCCAAGCGTAGATTAGTTGGTTCTCCTTCGCCCCCTCTAGTA
CAAACAAGGTAGCGGATTCCTGTTGATGTCGAAATAGGATAGCTGTATAC
GTAGTTGTAGCATCCTTTGTTCAGATACCGAGTGTGGTGCACCGTCTTGT
GTATGTACTTGTTCTCAGCCCTCGCGGTTTGTGCGTGCACACGTTATCAC
ATTATCCCTACGCCCGTTTACTTCTGAGACGACCGGCTCGTGTTTCCCTT
GGGATCATAATGATAACGATTTTTTTACTGCTCTTTTCAATCCCTGCAGC
GCAAC
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Coding sequence (CDS) from alignment at P-lacustris_contig1003:20959..22263+

>mRNA_P-lacustris_contig1003.138.1 ID=mRNA_P-lacustris_contig1003.138.1|Name=mRNA_P-lacustris_contig1003.138.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=732bp|location=Sequence derived from alignment at P-lacustris_contig1003:20959..22263+ (Pleurocladia lacustris SAG_25_93)
ATGTACCAAGTGGTGGCATGTCTCAGCCACCCCAACTTCCGCACAGCGTC
CAACTTTTCCCGCGCCTGCCTCAGTCCCTCTGCCGCCTATGCCGCCGCCG
CCTCGGCTAGCGGTAAAATCTTCGTGTGGGACATAGCCCGCAGCAGCGCC
ATCGCCAGTGGTGGCGCTTCTATAGGTGGTGGGGCGGATACGGATACGGT
TGTAGCATCGCAGATGTCAGTAGACACATCGCTATCACCACCGTCGTCTG
TGGCGACGGTATTGCAGACTCACGGGGTGGCGGCGTCCGGGTGTGACTGG
TGCATCAGCATGCCGAACACGCTAGCGTCGTGCGATTCCAAGGGCGGACT
GAGAGTGTGGGGATAGATGTACCAAGTGGTGGCATGTCTCAGCCACCCCA
ACTTCCGCACAGCGTCCAACTTTTCCCGCGCCTGCCTCAGTCCCTCTGCC
GCCTATGCCGCCGCCGCCTCGGCTAGCGGTAAAATCTTCGTGTGGGACAT
AGCCCGCAGCAGCGCCATCGCCAGTGGTGGCGCTTCTATAGGTGGTGGGG
CGGATACGGATACGGTTGTAGCATCGCAGATGTCAGTAGACACATCGCTA
TCACCACCGTCGTCTGTGGCGACGGTATTGCAGACTCACGGGGTGGCGGC
GTCCGGGTGTGACTGGTGCATCAGCATGCCGAACACGCTAGCGTCGTGCG
ATTCCAAGGGCGGACTGAGAGTGTGGGGATAG
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