Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Exons | 1 |
| Model size | 1305 |
| Cds size | 366 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815270.4413915-UTR-P-lacustris_contig1003:20958..21307 | 1622815270.4413915-UTR-P-lacustris_contig1003:20958..21307 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1003 20959..21307 + |
| 1693493441.3102612-UTR-P-lacustris_contig1003:20958..21307 | 1693493441.3102612-UTR-P-lacustris_contig1003:20958..21307 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1003 20959..21307 + |
| 1622815270.4704442-UTR-P-lacustris_contig1003:21673..22263 | 1622815270.4704442-UTR-P-lacustris_contig1003:21673..22263 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1003 21674..22263 + |
| 1693493441.3310108-UTR-P-lacustris_contig1003:21673..22263 | 1693493441.3310108-UTR-P-lacustris_contig1003:21673..22263 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1003 21674..22263 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815270.4574656-CDS-P-lacustris_contig1003:21307..21673 | 1622815270.4574656-CDS-P-lacustris_contig1003:21307..21673 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1003 21308..21673 + |
| 1693493441.3209288-CDS-P-lacustris_contig1003:21307..21673 | 1693493441.3209288-CDS-P-lacustris_contig1003:21307..21673 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1003 21308..21673 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1003.138.1 >prot_P-lacustris_contig1003.138.1 ID=prot_P-lacustris_contig1003.138.1|Name=mRNA_P-lacustris_contig1003.138.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=122bp
MYQVVACLSHPNFRTASNFSRACLSPSAAYAAAASASGKIFVWDIARSSA
IASGGASIGGGADTDTVVASQMSVDTSLSPPSSVATVLQTHGVAASGCDW
CISMPNTLASCDSKGGLRVWG* back to topmRNA from alignment at P-lacustris_contig1003:20959..22263+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1003.138.1 ID=mRNA_P-lacustris_contig1003.138.1|Name=mRNA_P-lacustris_contig1003.138.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1305bp|location=Sequence derived from alignment at P-lacustris_contig1003:20959..22263+ (Pleurocladia lacustris SAG_25_93)
GTCAGAACCCGGCACTTTTCTGATTCTTCATTTCCCAACGAGGCGCGCGT
CGAGCAGGCCCATTCACCAGTCGTATCATGTCATAGGTACAGCACCCAGC
AACTGGTGATCTAAACTCGCTTCGTTTTCAGCAGTTTTGAGCAGTGTCCC
GTCTTTTTCGCGCCGTCTGATGTACTCTATGTACTCTGATGTACTCCAGG
TACGCTTTCCTTTCACGTACTCTACCCTCTTGTGTGTCGTGCTTGTTATT
GGTGTCTCCTTCTCTCTCCATGATTGCGTTTGCTATGCCGCCCTACCCCA
TTATCTTCACACTGTCTGACACTTGACTTTTCAGGTTGTAGATGCGCGGA
TGTACCAAGTGGTGGCATGTCTCAGCCACCCCAACTTCCGCACAGCGTCC
AACTTTTCCCGCGCCTGCCTCAGTCCCTCTGCCGCCTATGCCGCCGCCGC
CTCGGCTAGCGGTAAAATCTTCGTGTGGGACATAGCCCGCAGCAGCGCCA
TCGCCAGTGGTGGCGCTTCTATAGGTGGTGGGGCGGATACGGATACGGTT
GTAGCATCGCAGATGTCAGTAGACACATCGCTATCACCACCGTCGTCTGT
GGCGACGGTATTGCAGACTCACGGGGTGGCGGCGTCCGGGTGTGACTGGT
GCATCAGCATGCCGAACACGCTAGCGTCGTGCGATTCCAAGGGCGGACTG
AGAGTGTGGGGATAGCTAGGGAGCCAGCACCAGCCGAACTTAATGATTGC
CGTAGGGATCGACCGCATACGGTCTAGGCAGCTAGGACTTTTTTTCGACT
TGGGCATTCCTTCATTGCTAACCCGAACAAGTCGACTCAAGTCAAGTGAA
AGGCAAGATTATTTCATGATTGCGTAAGTGCTCGAGCAAAAGGTTTGAGG
CAAGGGTGGGGTGGCGGGGATCTTGCCATTGCGGCATTTTCAGGCATAGA
CTAGTCTGCAGAAAACGTCTTTAGTTTGTACCCGATGGGAGGTGATGCGA
TGTAGCTATCCAAGCGTAGATTAGTTGGTTCTCCTTCGCCCCCTCTAGTA
CAAACAAGGTAGCGGATTCCTGTTGATGTCGAAATAGGATAGCTGTATAC
GTAGTTGTAGCATCCTTTGTTCAGATACCGAGTGTGGTGCACCGTCTTGT
GTATGTACTTGTTCTCAGCCCTCGCGGTTTGTGCGTGCACACGTTATCAC
ATTATCCCTACGCCCGTTTACTTCTGAGACGACCGGCTCGTGTTTCCCTT
GGGATCATAATGATAACGATTTTTTTACTGCTCTTTTCAATCCCTGCAGC
GCAAC back to topCoding sequence (CDS) from alignment at P-lacustris_contig1003:20959..22263+ >mRNA_P-lacustris_contig1003.138.1 ID=mRNA_P-lacustris_contig1003.138.1|Name=mRNA_P-lacustris_contig1003.138.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=732bp|location=Sequence derived from alignment at P-lacustris_contig1003:20959..22263+ (Pleurocladia lacustris SAG_25_93)
ATGTACCAAGTGGTGGCATGTCTCAGCCACCCCAACTTCCGCACAGCGTC
CAACTTTTCCCGCGCCTGCCTCAGTCCCTCTGCCGCCTATGCCGCCGCCG
CCTCGGCTAGCGGTAAAATCTTCGTGTGGGACATAGCCCGCAGCAGCGCC
ATCGCCAGTGGTGGCGCTTCTATAGGTGGTGGGGCGGATACGGATACGGT
TGTAGCATCGCAGATGTCAGTAGACACATCGCTATCACCACCGTCGTCTG
TGGCGACGGTATTGCAGACTCACGGGGTGGCGGCGTCCGGGTGTGACTGG
TGCATCAGCATGCCGAACACGCTAGCGTCGTGCGATTCCAAGGGCGGACT
GAGAGTGTGGGGATAGATGTACCAAGTGGTGGCATGTCTCAGCCACCCCA
ACTTCCGCACAGCGTCCAACTTTTCCCGCGCCTGCCTCAGTCCCTCTGCC
GCCTATGCCGCCGCCGCCTCGGCTAGCGGTAAAATCTTCGTGTGGGACAT
AGCCCGCAGCAGCGCCATCGCCAGTGGTGGCGCTTCTATAGGTGGTGGGG
CGGATACGGATACGGTTGTAGCATCGCAGATGTCAGTAGACACATCGCTA
TCACCACCGTCGTCTGTGGCGACGGTATTGCAGACTCACGGGGTGGCGGC
GTCCGGGTGTGACTGGTGCATCAGCATGCCGAACACGCTAGCGTCGTGCG
ATTCCAAGGGCGGACTGAGAGTGTGGGGATAG back to top
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