Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Model size | 538 |
| Cds size | 381 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815268.8108299-UTR-P-lacustris_contig1000:56168..56323 | 1622815268.8108299-UTR-P-lacustris_contig1000:56168..56323 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1000 56169..56323 + |
| 1693493440.1370583-UTR-P-lacustris_contig1000:56168..56323 | 1693493440.1370583-UTR-P-lacustris_contig1000:56168..56323 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1000 56169..56323 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815268.8238516-CDS-P-lacustris_contig1000:56323..56704 | 1622815268.8238516-CDS-P-lacustris_contig1000:56323..56704 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 56324..56704 + |
| 1693493440.1471386-CDS-P-lacustris_contig1000:56323..56704 | 1693493440.1471386-CDS-P-lacustris_contig1000:56323..56704 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 56324..56704 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1000.123.1 >prot_P-lacustris_contig1000.123.1 ID=prot_P-lacustris_contig1000.123.1|Name=mRNA_P-lacustris_contig1000.123.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=127bp
MGFAAACVFSRPATLVSAKCRPWRAALERVCMAWAGRGGTLDDAMRMDGA
CVPCLCCVCGVVDLCAYTLHARAPSDESCNKLYAREPADESCRGIQRLEQ
VGPLPTRHDAAGGCCCSGFLRSEGRTP back to topmRNA from alignment at P-lacustris_contig1000:56169..56704+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1000.123.1 ID=mRNA_P-lacustris_contig1000.123.1|Name=mRNA_P-lacustris_contig1000.123.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=536bp|location=Sequence derived from alignment at P-lacustris_contig1000:56169..56704+ (Pleurocladia lacustris SAG_25_93)
GCGCGCATGCAACTTGCCTGAGTGGCCGTGTGCACACACGCAACAACACC
ACACACACAACACGTGGATTGTTATGCATTGGGGCGGCACCCATGACAAA
GCAAGAACAGATGGTTGGGAGCGTCAATCTCGTACTACGTTAGTTTTGCT
GCGGCATGGGTTTTGCTGCAGCATGTGTTTTTTCGAGACCTGCGACATTG
GTTTCGGCGAAGTGCCGGCCTTGGAGAGCGGCCTTGGAGAGAGTTTGTAT
GGCGTGGGCGGGGCGGGGCGGCACTCTTGATGATGCTATGAGGATGGATG
GAGCGTGTGTGCCTTGTCTGTGTTGCGTGTGTGGTGTTGTTGACTTGTGT
GCGTACACGCTGCATGCGCGCGCGCCATCAGATGAGAGTTGCAACAAGTT
GTATGCGCGCGAGCCGGCAGATGAGAGTTGCAGAGGTATCCAACGGTTGG
AGCAAGTAGGTCCGCTGCCAACACGTCACGACGCAGCGGGGGGATGCTGT
TGCAGCGGGTTCCTCCGCTCTGAAGGGCGTACTCCG back to topCoding sequence (CDS) from alignment at P-lacustris_contig1000:56169..56704+ >mRNA_P-lacustris_contig1000.123.1 ID=mRNA_P-lacustris_contig1000.123.1|Name=mRNA_P-lacustris_contig1000.123.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=762bp|location=Sequence derived from alignment at P-lacustris_contig1000:56169..56704+ (Pleurocladia lacustris SAG_25_93)
ATGGGTTTTGCTGCAGCATGTGTTTTTTCGAGACCTGCGACATTGGTTTC
GGCGAAGTGCCGGCCTTGGAGAGCGGCCTTGGAGAGAGTTTGTATGGCGT
GGGCGGGGCGGGGCGGCACTCTTGATGATGCTATGAGGATGGATGGAGCG
TGTGTGCCTTGTCTGTGTTGCGTGTGTGGTGTTGTTGACTTGTGTGCGTA
CACGCTGCATGCGCGCGCGCCATCAGATGAGAGTTGCAACAAGTTGTATG
CGCGCGAGCCGGCAGATGAGAGTTGCAGAGGTATCCAACGGTTGGAGCAA
GTAGGTCCGCTGCCAACACGTCACGACGCAGCGGGGGGATGCTGTTGCAG
CGGGTTCCTCCGCTCTGAAGGGCGTACTCCGATGGGTTTTGCTGCAGCAT
GTGTTTTTTCGAGACCTGCGACATTGGTTTCGGCGAAGTGCCGGCCTTGG
AGAGCGGCCTTGGAGAGAGTTTGTATGGCGTGGGCGGGGCGGGGCGGCAC
TCTTGATGATGCTATGAGGATGGATGGAGCGTGTGTGCCTTGTCTGTGTT
GCGTGTGTGGTGTTGTTGACTTGTGTGCGTACACGCTGCATGCGCGCGCG
CCATCAGATGAGAGTTGCAACAAGTTGTATGCGCGCGAGCCGGCAGATGA
GAGTTGCAGAGGTATCCAACGGTTGGAGCAAGTAGGTCCGCTGCCAACAC
GTCACGACGCAGCGGGGGGATGCTGTTGCAGCGGGTTCCTCCGCTCTGAA
GGGCGTACTCCG back to top
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