mRNA_P-lacustris_contig100.113.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE) HSP 1 Score: 300 bits (768), Expect = 1.040e-92 Identity = 157/187 (83.96%), Postives = 166/187 (88.77%), Query Frame = 1 Query: 685 HLTKIKGSAGSAPVSSSFAPAVASPAFPPGGDVAQPPSRAVFDPRVGLATAHLDSLSLMNGAGMGVGSSSSGVAAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSXXXXQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG 1245
++ ++GSAGSAP S+S APA A P GG+V PPSR VFDPRVGLATAHLD+L LMNG G+GVGSS SG AAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEG+YPYSQVACLEGHRQLISDLCWAPDGRSLLS QTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG
Sbjct: 51 YMLSMQGSAGSAPASASLAPAAARPGASTGGNVTGPPSREVFDPRVGLATAHLDALGLMNGGGIGVGSSGSGFAAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEGG 237
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: A0A835YSR1_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR1_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.840e-25 Identity = 62/103 (60.19%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 934 KLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSXXXXQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 1242
KL GHTAAVY FSP +LVAS GFDRT+RLWEG YP+SQVACL HRQL+SD XXXX DTETGQRV N+L LEG++QCV A G
Sbjct: 76 KLVGHTAAVYAVAFSPCGNLVASGGFDRTVRLWEGGYPHSQVACLAEHRQLVSDXXXXXXXXXXXXXXXXXXXXXXDTETGQRVNNVLRLEGMLQCVSYADGG 178
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: D7FIJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ7_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.380e-15 Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 1 Query: 685 HLTKIKGSAGSAPVSSSFAPAVASPAFPPGGDVAQPPSRAVFDPRVGLATAHLDSLSLMNGAGMGVGSSSSGVAAGRVLVAEAKL 939
++ ++GSAGSAP S+S GG+V PPSR VFDPRVG+ATAHLDSL LMNG G+ VGS+ + AGR+LVAEAKL
Sbjct: 51 YMLSMQGSAGSAPASASLXXXXXXXXAATGGNVTGPPSRKVFDPRVGIATAHLDSLGLMNGGGIRVGSNGIRIPAGRILVAEAKL 135
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: A0A1V9Z1V2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1V2_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 5.910e-13 Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1 Query: 913 RVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGSYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSXXXXQTVAKWDTETGQRVGNMLSLEGLVQCV 1224
RVL +++L GH AVY KFSP L+AS D + LW+ + ++Q +A L H QL+ D+ W+ D RSLLS TV WDT+ GQ + N + + GLVQ V
Sbjct: 107 RVLYQKSELRGHGGAVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLASHNQLVIDMSWSNDSRSLLSASYDHTVNLWDTDKGQLL-NSIGVNGLVQTV 211
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: A0A1V8SS61_9PEZI (Uncharacterized protein n=4 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8SS61_9PEZI) HSP 1 Score: 78.2 bits (191), Expect = 3.110e-12 Identity = 34/103 (33.01%), Postives = 59/103 (57.28%), Query Frame = 1 Query: 934 KLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSXXXXQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 1242
+++GH+A ++ A+FSP + +ASAG DR + LW S + L GH+ + DL W+ D + + S +A W+ ETG+R+ + E ++ C+ V+ G
Sbjct: 55 EMTGHSAEIFAARFSPSGAHIASAGADRDILLWHSSGDCANYGTLVGHKSAVLDLHWSRDSQVIYSASADMHIASWNVETGERIRRHVGHEEVINCIDVSKRG 157
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV) HSP 1 Score: 72.4 bits (176), Expect = 4.570e-10 Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 1 Query: 955 AVYVAKFSPRDSLVASAGFDRTLRLWEGSYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSXXXXQTVAKWDTETGQRVGNMLSLEGLVQCV 1224
AVY KFSP L+AS D + LW+ + ++Q +A L H QLI D+ W+ D RSLLS TV WDT+ GQ V N + + GLVQ V
Sbjct: 134 AVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLTQHNQLIIDISWSNDSRSLLSASYDHTVNLWDTDKGQLV-NSVGVNGLVQTV 224
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: A0A1A0HJF3_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993 TaxID=869754 RepID=A0A1A0HJF3_9ASCO) HSP 1 Score: 65.9 bits (159), Expect = 3.020e-8 Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 1 Query: 937 LSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWE----GSYPYSQVACLEGHRQLISDLCWAPDGRSLLSXXXXQTVAKWDTETGQRVGNMLSLEGLVQCVQVAAEG 1242
LSGHT AV+ +FS +ASAG DRT+RLW +EGH++ I+ L W + +LS TV+ WD ETGQR+ E V ++EG
Sbjct: 24 LSGHTGAVFSIEFSADGHNIASAGMDRTIRLWNLPTTADNEAPNYGVIEGHKKAITSLSWILSSK-ILSASADSTVSVWDAETGQRLKTGKGHELTVNDCSTSSEG 128
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: A0A512UMM7_9ASCO (Uncharacterized protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UMM7_9ASCO) HSP 1 Score: 64.7 bits (156), Expect = 7.260e-8 Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 1 Query: 937 LSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWE----GSYPYSQVACLEGHRQLISDLCWAPDGRSLLSXXXXQTVAKWDTETGQRV 1185
LSGH+ AV+ KFSP +ASAG DRT+RLW + +EGH+ ++ L W + +LS TV+ WD ETGQR+
Sbjct: 24 LSGHSGAVFSVKFSPDGQHIASAGTDRTIRLWNLPTRANEESPNYGVIEGHKGGLTALSWLSQSK-ILSTSADSTVSIWDAETGQRL 109
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: A9V9T1_MONBE (Lactoylglutathione lyase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V9T1_MONBE) HSP 1 Score: 64.7 bits (156), Expect = 1.790e-7 Identity = 33/84 (39.29%), Postives = 44/84 (52.38%), Query Frame = 1 Query: 934 KLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSXXXXQTVAKWDTETGQRV 1185
+L GH AVY FSP ++A+AGFDR + +W + L+GH + L WA L S +TVA WD TG+RV
Sbjct: 73 RLEGHAEAVYAGTFSPSGHMLATAGFDRNVYVWNTFGNCENIMSLQGHTGAVLGLHWAKLENRLFSCSSDKTVAVWDGNTGERV 156
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Match: A0A4P6XGR8_9ASCO (Prp8 binding protein n=1 Tax=Metschnikowia aff. pulcherrima TaxID=2163413 RepID=A0A4P6XGR8_9ASCO) HSP 1 Score: 62.4 bits (150), Expect = 4.410e-7 Identity = 35/87 (40.23%), Postives = 45/87 (51.72%), Query Frame = 1 Query: 937 LSGHTAAVYVAKFSPRDSLVASAGFDRTLRLW----EGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSXXXXQTVAKWDTETGQRV 1185
LSGH A KFSP +ASAG DRT+RLW + +EGH+ ++ L W + + + TVA WD ETGQRV
Sbjct: 33 LSGHEGAALCVKFSPDGQNIASAGLDRTIRLWNLPTDAKDEVPNYGVIEGHKGAVTCLDWLAQSK-IFTGSADSTVAFWDAETGQRV 118 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig100.113.1 >prot_P-lacustris_contig100.113.1 ID=prot_P-lacustris_contig100.113.1|Name=mRNA_P-lacustris_contig100.113.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=202bp MFETHLGLCGCRHLTKIKGSAGSAPVSSSFAPAVASPAFPPGGDVAQPPSback to top mRNA from alignment at P-lacustris_contig100:204113..206874+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig100.113.1 ID=mRNA_P-lacustris_contig100.113.1|Name=mRNA_P-lacustris_contig100.113.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2762bp|location=Sequence derived from alignment at P-lacustris_contig100:204113..206874+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig100:204113..206874+ >mRNA_P-lacustris_contig100.113.1 ID=mRNA_P-lacustris_contig100.113.1|Name=mRNA_P-lacustris_contig100.113.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1212bp|location=Sequence derived from alignment at P-lacustris_contig100:204113..206874+ (Pleurocladia lacustris SAG_25_93)back to top |