Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-27_000040.1 |
| Exons | 4 |
| Model size | 1272 |
| Cds size | 978 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815267.1341863-UTR-P-lacustris_contig100:158085..158379 | 1622815267.1341863-UTR-P-lacustris_contig100:158085..158379 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig100 158086..158379 - |
| 1693493439.129797-UTR-P-lacustris_contig100:158085..158379 | 1693493439.129797-UTR-P-lacustris_contig100:158085..158379 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig100 158086..158379 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815267.1464136-CDS-P-lacustris_contig100:158379..158501 | 1622815267.1464136-CDS-P-lacustris_contig100:158379..158501 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig100 158380..158501 - |
| 1693493439.1382532-CDS-P-lacustris_contig100:158379..158501 | 1693493439.1382532-CDS-P-lacustris_contig100:158379..158501 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig100 158380..158501 - |
| 1622815267.1600432-CDS-P-lacustris_contig100:158880..159583 | 1622815267.1600432-CDS-P-lacustris_contig100:158880..159583 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig100 158881..159583 - |
| 1693493439.1499422-CDS-P-lacustris_contig100:158880..159583 | 1693493439.1499422-CDS-P-lacustris_contig100:158880..159583 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig100 158881..159583 - |
| 1622815267.1762862-CDS-P-lacustris_contig100:163079..163157 | 1622815267.1762862-CDS-P-lacustris_contig100:163079..163157 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig100 163080..163157 - |
| 1693493439.1609206-CDS-P-lacustris_contig100:163079..163157 | 1693493439.1609206-CDS-P-lacustris_contig100:163079..163157 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig100 163080..163157 - |
| 1622815267.186198-CDS-P-lacustris_contig100:163310..163385 | 1622815267.186198-CDS-P-lacustris_contig100:163310..163385 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig100 163311..163385 - |
| 1693493439.172742-CDS-P-lacustris_contig100:163310..163385 | 1693493439.172742-CDS-P-lacustris_contig100:163310..163385 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig100 163311..163385 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig100.109.1 >prot_P-lacustris_contig100.109.1 ID=prot_P-lacustris_contig100.109.1|Name=mRNA_P-lacustris_contig100.109.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=326bp
MHHRTVTCRMCRQKFFPASLKFHEKVCAKRQEHVELSCDHCKERFPCTVL
QVHKKKCERNQRRTRTTQGGGIRSQDLTMPRHQGEIRGAGGDTSSRHPHH
FAGPLIARKHRSSLLRSRSSSCDDGGSGEPPLPDLFFDQCHSSDTNATNI
GGAGGKAVVVTSSDGRIACSNCMRWFSPDRVGVHQEICKRVNTASVRGSK
ISKRGSITTKNSQISTSASSAAPFSRRRRSSYPIFGGGHAGAIAHRGGGR
SVGRKQGNITNHPVVSCPGDSLVCTDHMVLETLGKKIDQPKIDTTTATTT
ATHHPCFRGTIRNGMSRRNRSQPRS* back to topmRNA from alignment at P-lacustris_contig100:158086..163385- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig100.109.1 ID=mRNA_P-lacustris_contig100.109.1|Name=mRNA_P-lacustris_contig100.109.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5300bp|location=Sequence derived from alignment at P-lacustris_contig100:158086..163385- (Pleurocladia lacustris SAG_25_93)
ATGCATCACAGAACGGTCACGTGCCGCATGTGCCGGCAGAAGTTCTTCCC
AGCCTCTCTCAAGTTTCACGAAAAGGTGCGACAGTACTTGTAGGGGTTAT
ATATAGCACTGGTAGCCAGAGGCAAAGTTTGTGTGAGCAAAGCACTTGTC
GCTTCGCTTCTTCACAAGCGGAATGAGTTGGCGGAGTGCCTGCTATGAGG
AGTTTATTTGCCACATTTGTTTCGGCAGGTGTGTGCGAAGAGACAGGAGC
ATGTCGAGCTATCCTGCGACCACTGCAAGGAACGGTTTCCATGCACAGTA
CTTCAGGTCTGTATGTAATTTATCGTGTCGGTGTGTGAGCACCTTGCGAC
TGCTTTAGCCATGGAGCCTCTCAGTCCCAGTGATAGTGGTGTCGACTGCT
CGAAAAGTTCTGATTACAGTCATGGCGCCGGTTTAATAGAGGATCGGGCA
GAGGCCCGACTTTTCTCTTGAACCCACTTTCCTCCTAAACCGGTCTAAGA
GAATACTCTCAAGCTCGTCATTCTCTTAGACCGGATCCAAATTAAACTAG
GCTGTTCAAGGGCGATGCCCTTGCCAGACTGCGTGTGAGCTCATGGATGA
CACATAAATCATGTTGAGAACGTACGCTGTGTGTCTCCAGGCTTGTGTTG
GGTGAACAGACAAAACGAAATAGAAAATGCATTATTGTATCCGCCAAAAT
TCGACAAGTGAAGAACGATTGACCACCTCAGCACTCTCGCCTATCTGTCT
GCAGCGTTACATGTAGTCTCGAATGACTGTCTGCCTTGCTTCCCTCGACC
CGTAGTCGCTCGTCCAAGATATGGTAGGACACGTCCTGTATGCCGCACTT
CTCAGCAACATCCTCGAGTGCACAACCAATGTTCAGCTACCCCCGAGTAC
GGCGGCGGACGCGGGGCTGCTGCCCCAGTACGGGCCCGTTTCGCCTTGTT
CGGACTCGTCGTCCTCATCGACATCCGAGACAGGATCCATTTGCGACGCG
CCCTCATCAAAAATATCATCTGCCATGTCTGATACGATAGCTTGGGCTAC
TTCCTCCTTCTCCTCTACAGTCACCCATGTTTCTCGCGGCCATGGAACCC
GAGTTTGGCGCAGCGCCCAGCGAAAGCCCTAGACCAGCGAGTGCTAAGCT
GAGGTCATCGACACTACCACGCTTCGCTCCGACACTTAGACGCGAAATCA
AACTCGTCAGCTCGTCCACATTCTCTGTATTGCCGGTGGCTTTCGTGCGG
CCAACCTCCTGGATGAGTTGCGCGCGCATAGCGGGAGAGAGAATGTCTGC
TTTCAACCAGCACCTGCGACAGGGTGAGCAGGGCGGACAGAAGGCATCGC
CAAGCACAGTCGGAACCGCCGTGAAGTCCTCGGTGAACCCAGGAGGCGCA
CAAAAAATAATGAAACAATGAGGCCCCCGGGATAGCACACGCGAAGTGTA
CCAAAATAAAAATGGGCGACGCATTTTTGCGGTACTGGTTGTCGTTTCAT
TTGGAGAGAAACACGCCCGAAAAACAGTCGAGATGATACCAATGGATCGA
TCACATACATGAAAGCTAGAAAGTACAGGCTCAGGTAGCGTGCACACGTC
TTGATAGTTTCCGGTGAAATCTCATCCCACGCGGCCTTGCAAAGCTCAGC
GGCGTCTTCCCTCCGCCAGCACACGGCAACCCTGGACCGCTTTCCGCTTC
TTCGCTTCCTCCCGTAGCTGGAGCGCCGAGTCCATCGTGTCTGCGCGGAT
GTGGAGCAGCCTCGTCCTGTATCGACTCTTCAGGGCTGCAACGATGCCGG
CATCCGCAGGCTGGTGTTTCGCGGTGCAGTTCGGCGGTAGCTCGAGAATT
TTCACGTGCCCCCGGGGGTCTACCAAGTTTGCGTGGCTTTTGTGGCTGTT
CGCGACTAGGACGTCTTTGCTGGTGACTTAACGTACGTGCAGAAGAAGCA
CCTTGTTCCACCACAGGCGGAAGGCGCGCTCGTGAGACCACGCGTTGAAG
TACTCGATTGGACACTTCCTGAACCTGAAGCACCGGGGGTCTTTGGCGTG
GCCGTGACAGCGGCACTTTTCACCCGGTGGCATCCGTCGCCACATACAGC
GTGACGCGCTCCTTCGCCGCCATACCTTTCACTCCCCGCACCGACCACTT
CTTCTCGCCAGGCGCTAAGTAAGTCGTGGTAGGCAGAAGCCTGTACTGCA
GCGCCGTCTCATCACAGTTGATGATGCACTCCGGCTCGTAATTGGCAATC
TTCTCGCGGACGATGCCGATTTGGTCCGCGATGGCTTCATCGTCGACGCT
TCCTGCCTGGCCGCAGCTTGATGGACTTCATGCCGTTTCGCTTGATGACT
GTTTTTGCCCACGAGTCAGAAGCTCAAAAGGCACCGTACCGCTCGCGTTC
TTCACGTGTTGATGCTTGTGCCTCGAAAGTGATGATGCTGTTCCGATCCG
CGCTCCCCTAGCCTGCGCGATCAGTTCCAACACCATATTTTCCAGCTGGG
GACCCGAAGAAGACAACAGCGATCAGATGTTGGGGCAACAGCAGTCGGCA
GAGAGGATGCATGCACGAATGGTCGAGGATAGCAACGATTATGTAGGGCC
GTAAAATGAACTAGCAGCGCTCAGCGGACCAAATCATTATTCACACCAGG
TATAATTTATCACGCGCTGCTGGACATAATTCCGCATGTTCACGTACAAT
ATATAAGTCCGGGTATTAACGAACGCTCCGACCAGCAGCCACACAAACTC
TCTAACTACCAAGCTACCGCATGCCACACATATGACATTCCCTTGTGGGG
CCCTTTACTGTCTCGTTGTATGCATACTGTACATGCACTGACAGAGAACT
GGAGAAAAAAACATGGTCCCCGTTTCTTTTTCTCGGCCTAGGAGCTACGC
ATTATTTTCAAGAACTACATCTACATGGCATGCTACATGCGACTGTATGC
ACAGCCATCGTGCGCAGGAGGTCGAGGGCTTGCCCTTTTGTCCGCAAGGG
CGACGCGGGTGCGTTTGGCTCTCCCGCCTTTTTTTTGCGACAGCGTTGCC
AAGTTGCAAGCCGCTACGTGTCCCCGCAGAGCCCGTGAGGTTGCTCTCTG
GGCGTTTCTCAGGCTTCCCCTCTGCAGTTTGCGAGGTTGAAGTCTTGCGT
TTGCCGGAATCTGCACAGCTGTGGCAAGCGCGATGCATCTCGCTGTCGCC
ATGCGGGTCGACCACTCCACACGTTCCGTGGAGGTAGCCTCCGCAGACCC
TGCATTTGTGCCTCGTGAAGTCTGGCGCGCTTGGCATATGATCGGGGACG
CACAAGCAGCGGCTACCCGCTGCACAGGGCATGTTGTCCGCAGCTCCGTC
GCGTGTGTGTGATGCGTGATCCGGGGTTCGATTTAAGAAAGTACCGAAAA
AATATTACTTTTTCTTAAATCGTGTTTTGGCTGGGCGGAGCCAATTTGAC
TCTCTTATATCCGGGTTTCTCAGATTCTCTTAAACCGGAGCCATGACTGT
ATTGTTAATTACGTTATTGTATCTGCCCTGCTCCTCTTCTCGCACGTAGA
GCATGGGTGTCAATGCTTGTGGGATCCTCCCCACTTTCTTCCGTGTAAGG
TACACTGCCGCACGACCTTGAGGCACGGCTCCGATCGTTCGATATAGTAT
TCTCCTCAAGCATGTGCCGCAACTGAATACCCCGTGGTCTACTCATCCAA
ACTGGCTTGCTCAAACCCAAGTGCTTCTTTTCTAACAGTTAATCCCAACT
CCGTTTCCGGCTTGCACCACACCCACATATTACGTCGATTTCTTGGCCCC
AGGTGCACAAGAAAAAGTGCGAACGAAACCAAAGGCGAACACGCACCACG
CAAGGCGGGGGTATACGATCGCAGGATCTCACAATGCCGCGGCATCAGGG
CGAGATACGTGGGGCTGGTGGCGACACATCGTCGCGACATCCCCATCACT
TTGCGGGCCCATTAATAGCGAGAAAACACCGCAGCAGCCTTCTTCGATCA
AGAAGTTCGTCTTGTGACGACGGGGGAAGCGGTGAGCCACCGCTGCCGGA
CCTGTTTTTTGACCAGTGCCACAGCAGCGATACCAACGCCACAAATATCG
GAGGCGCTGGAGGTAAGGCGGTCGTCGTGACTTCAAGTGACGGGCGCATA
GCTTGCTCGAACTGCATGCGTTGGTTTTCCCCCGATAGGGTGGGCGTACA
TCAGGAGATATGCAAGCGGGTCAACACAGCATCAGTTCGCGGAAGCAAAA
TCAGTAAAAGAGGAAGCATCACGACGAAGAACAGCCAGATATCTACATCA
GCATCTTCCGCTGCCCCCTTCTCCAGAAGACGACGATCGAGCTACCCCAT
TTTCGGTGGCGGTCACGCGGGGGCGATAGCACACCGAGGCGGCGGGCGCT
CGGTGGGTCGAAAGCAAGGCAACATCACGAATCACCCTGTTGTCAGTTGT
CCTGGGGACTCGCTGGTATGTACGGATCACATGGTTCTCGAAACGCTAGG
CAAGAGTGGATAAGTATTGTATGTTTTCGATCATCATGTGTGCCCGTGGG
AGGATGCTGGGTTTCAAGCCCGGTCAACTTCAGCTTAATGCATGTCTGAG
GTAAGGTGCATGGAGTCCATTTCTGTACGCCAGAGATGCGCGTCATGTAT
GAGCTTCTGTATCTCTCTCGTGCCCCCGGACGGACTTGTACCTCCTGTTC
CTATTGAATTTTCGCGTTGTGCGGCCGTGATTGCTCTCTACGACGAAAAC
TGTTTGTCGTTCTTCAAATTATCACAAAACCAAAGACTAAAAGAGACGTG
AACCCACTGTTACTCTTTGCTCGAGATCCCCCTTGACTTTTTTTAGTGTT
TGAACCACCACACCGTTTCAGCAGCCTACTAGAGAGATCGATCAGCCGAA
AATCGATACCACCACCGCCACAACAACAGCAACCCATCATCCATGCTTCC
GGGGCACTATCAGGAATGGAATGTCGAGACGAAATAGGTCACAGCCTCGG
TCATGAGAAGTTGTGGTATCCGCACATGGACGATGGGCCACAGGGAGACG
CTCGAAAACACCAACATCGGAGAAATGAACGACAGCAAAGAAAACGAGAC
ATTCCCGCCTCGGGTCTTCCAGCGAACGCTTCTACTGCCTCGTCGAGCAC
GTGCCCCATCAACATCACGCACGTCGCCCTTCCAGTGCTCGAGGCTGGGC
TTCGTGCTGCGATGCGGCGGCGCCGGGTTCACGAGCTCAGATGGGGCTGT
TTGCAGGACGCGTCGTAAAAATGAGTTGTTCCCCTGTTCGGCTGAGACGT
back to topCoding sequence (CDS) from alignment at P-lacustris_contig100:158086..163385- >mRNA_P-lacustris_contig100.109.1 ID=mRNA_P-lacustris_contig100.109.1|Name=mRNA_P-lacustris_contig100.109.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1956bp|location=Sequence derived from alignment at P-lacustris_contig100:158086..163385- (Pleurocladia lacustris SAG_25_93)
ATGCATCACAGAACGGTCACGTGCCGCATGTGCCGGCAGAAGTTCTTCCC
AGCCTCTCTCAAGTTTCACGAAAAGATGCATCACAGAACGGTCACGTGCC
GCATGTGCCGGCAGAAGTTCTTCCCAGCCTCTCTCAAGTTTCACGAAAAG
GTGTGTGCGAAGAGACAGGAGCATGTCGAGCTATCCTGCGACCACTGCAA
GGAACGGTTTCCATGCACAGTACTTCAGGTGTGTGCGAAGAGACAGGAGC
ATGTCGAGCTATCCTGCGACCACTGCAAGGAACGGTTTCCATGCACAGTA
CTTCAGGTGCACAAGAAAAAGTGCGAACGAAACCAAAGGCGAACACGCAC
CACGCAAGGCGGGGGTATACGATCGCAGGATCTCACAATGCCGCGGCATC
AGGGCGAGATACGTGGGGCTGGTGGCGACACATCGTCGCGACATCCCCAT
CACTTTGCGGGCCCATTAATAGCGAGAAAACACCGCAGCAGCCTTCTTCG
ATCAAGAAGTTCGTCTTGTGACGACGGGGGAAGCGGTGAGCCACCGCTGC
CGGACCTGTTTTTTGACCAGTGCCACAGCAGCGATACCAACGCCACAAAT
ATCGGAGGCGCTGGAGGTAAGGCGGTCGTCGTGACTTCAAGTGACGGGCG
CATAGCTTGCTCGAACTGCATGCGTTGGTTTTCCCCCGATAGGGTGGGCG
TACATCAGGAGATATGCAAGCGGGTCAACACAGCATCAGTTCGCGGAAGC
AAAATCAGTAAAAGAGGAAGCATCACGACGAAGAACAGCCAGATATCTAC
ATCAGCATCTTCCGCTGCCCCCTTCTCCAGAAGACGACGATCGAGCTACC
CCATTTTCGGTGGCGGTCACGCGGGGGCGATAGCACACCGAGGCGGCGGG
CGCTCGGTGGGTCGAAAGCAAGGCAACATCACGAATCACCCTGTTGTCAG
TTGTCCTGGGGACTCGCTGGTATGTACGGATCACATGGTTCTCGAAACGC
TAGGCAAGAGTGCACAAGAAAAAGTGCGAACGAAACCAAAGGCGAACACG
CACCACGCAAGGCGGGGGTATACGATCGCAGGATCTCACAATGCCGCGGC
ATCAGGGCGAGATACGTGGGGCTGGTGGCGACACATCGTCGCGACATCCC
CATCACTTTGCGGGCCCATTAATAGCGAGAAAACACCGCAGCAGCCTTCT
TCGATCAAGAAGTTCGTCTTGTGACGACGGGGGAAGCGGTGAGCCACCGC
TGCCGGACCTGTTTTTTGACCAGTGCCACAGCAGCGATACCAACGCCACA
AATATCGGAGGCGCTGGAGGTAAGGCGGTCGTCGTGACTTCAAGTGACGG
GCGCATAGCTTGCTCGAACTGCATGCGTTGGTTTTCCCCCGATAGGGTGG
GCGTACATCAGGAGATATGCAAGCGGGTCAACACAGCATCAGTTCGCGGA
AGCAAAATCAGTAAAAGAGGAAGCATCACGACGAAGAACAGCCAGATATC
TACATCAGCATCTTCCGCTGCCCCCTTCTCCAGAAGACGACGATCGAGCT
ACCCCATTTTCGGTGGCGGTCACGCGGGGGCGATAGCACACCGAGGCGGC
GGGCGCTCGGTGGGTCGAAAGCAAGGCAACATCACGAATCACCCTGTTGT
CAGTTGTCCTGGGGACTCGCTGGTATGTACGGATCACATGGTTCTCGAAA
CGCTAGGCAAGAAGATCGATCAGCCGAAAATCGATACCACCACCGCCACA
ACAACAGCAACCCATCATCCATGCTTCCGGGGCACTATCAGGAATGGAAT
GTCGAGACGAAATAGGTCACAGCCTCGGTCATGAAGATCGATCAGCCGAA
AATCGATACCACCACCGCCACAACAACAGCAACCCATCATCCATGCTTCC
GGGGCACTATCAGGAATGGAATGTCGAGACGAAATAGGTCACAGCCTCGG
TCATGA back to top
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