Homology
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
D7FVI2_ECTSI (Peroxin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI2_ECTSI)
HSP 1 Score: 356 bits (914), Expect = 5.080e-109
Identity = 190/254 (74.80%), Postives = 206/254 (81.10%), Query Frame = 2
Query: 74 MVRAMVRLVKTKNCFVNLPAHVARGLAGASEGAVILRLSWDAS----PSTTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGA-AAACVRLTADTEVAVSPKPRRRTRLREGGERQQRFRSSGLLRVAPPPPGWQADGAAARGDC--SGCARPYLLVHPLLSQESTG 814
MVRA VRLVKTKNCFVN+PAHVARGL GASEGAVILRLSWD + +TT+PSW F SWNGG+SDAQSGAIEVPLALA+V GLAAALD+D+YLSV EPAGYVPTASRVCLEPLS DDWEILEANAEHLEG ML QVCVAYTGQ+MPIWVHNTSLI+L+VVS ETP GA AA CVRLTADTEVAVSPK G R+QRFRSSGLLRVAPPPPGW+ + A + SGC RPY+L HP E G
Sbjct: 1 MVRATVRLVKTKNCFVNIPAHVARGLDGASEGAVILRLSWDGAVAEAAATTTPSWAFASWNGGISDAQSGAIEVPLALAQVLGLAAALDADSYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVCVAYTGQVMPIWVHNTSLISLQVVSVETPGGAPAAGCVRLTADTEVAVSPKXXXXXXXXXGEPRRQRFRSSGLLRVAPPPPGWKLEETALARNSGGSGCGRPYVLAHPATLTEIDG 254
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
A0A6H5L6R6_9PHAE (Peroxin-1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R6_9PHAE)
HSP 1 Score: 258 bits (660), Expect = 3.430e-73
Identity = 140/189 (74.07%), Postives = 149/189 (78.84%), Query Frame = 2
Query: 257 DAQSGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGA-AAACVRLTADTEVAVSPKPRRRTRLREGGERQQRFRSSGLLRVAPPPPGWQADGAAAR--GDCSGCARPYLLVHPLLSQESTG 814
D+ SGAIEVPLALA+V GLAAALDSDAYLSV EPAGYVPTASRVCLEPLS DDWEILEANAEHLEG ML QVCVAYTGQ+MPIWVHNT LI+L+VVS E P GA AA CVRLTADTEVAVSPK EG RQ+RFRSSGLLRVA PPPGW+ +G A G SGC RPY+L HP E G
Sbjct: 6 DSSSGAIEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVCVAYTGQVMPIWVHNTLLISLQVVSVEIPGGAPAAGCVRLTADTEVAVSPKXXXXXXXXEGEPRQERFRSSGLLRVASPPPGWKLEGTALGRIGGGSGCGRPYVLAHPATLTEIDG 194
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
A0A7S2SM78_9STRA (Peroxin-1 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SM78_9STRA)
HSP 1 Score: 110 bits (275), Expect = 2.000e-22
Identity = 72/196 (36.73%), Postives = 106/196 (54.08%), Query Frame = 2
Query: 89 VRLVKTKNCFVNLPAHVARGLAGA----SEGAVILRLSWDASPSTTS-----PSWTFTSWNGGLSDAQSGAIEVPLALARVAGLAAALD------SDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
V +V N FV +P+ + + + S G V LR+ W P+ +S PS +F W ++D ++VP+ALA GL A+D D+ L V V Y P ASRV ++P+++DDWEIL+ +A +E ++L Q+CV GQ P+W+H + I L+V S A CVRL +TEV V+PK R
Sbjct: 14 VVVVNGTNNFVGIPSRFCQNIRASFPQKSHGVVALRIGWLGPPNNSSGGLARPSQSFVGWTSQVADGHF--LQVPVALAESIGLKDAVDFATKTAPDSPLVVSVAVIPYAPVASRVDVDPVTADDWEILQLHANFVESELLSQICVLGPGQQFPMWIHGRTRINLQVSSIALVEKGQALCVRLARNTEVVVAPKLR 207
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
D3B6L3_POLPP (Peroxin-1 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B6L3_POLPP)
HSP 1 Score: 103 bits (256), Expect = 5.410e-20
Identity = 74/182 (40.66%), Postives = 102/182 (56.04%), Query Frame = 2
Query: 110 NCFVNLPAHVARGLAGASE------GAVILRLSWDASPSTTSPSWTFTSWNGGLSDAQSG--AIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
NCFV LP + L +E ++ L LSW ST W+GG SD SG AIE+ L G+A ++V+ + G VP A+ V +EPL+SDDWEILE + E+LE Q+L QV V GQI+PIW+H++++I L++V A + VRLT E+AV+PKPR
Sbjct: 12 NCFVCLPPKIVHSLFLLAEKNAISVNSLTLELSW-YDKSTKKERKINVGWSGGASDPSSGPDAIEMNAELGDAIGIA----DHTRVTVKAQ-IGSVPQATSVQVEPLTSDDWEILELHQEYLEQQILNQVNVMTRGQIVPIWIHHSTIIKLKIVDT-----APSEIVRLTNQVEIAVAPKPR 182
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
F4PSY5_CAVFA (Peroxin-1 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PSY5_CAVFA)
HSP 1 Score: 99.8 bits (247), Expect = 7.490e-19
Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 2
Query: 89 VRLVKTKNCFVNLPAHVARGLAGASEGA-VILRLSWDASPSTTSPSWTFTSWNGGLSDAQ--------SGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAA------ACVRLTADTEVAVSPKPR 631
V L + NCFVNLP +A LA +E +IL L W + + F W+GG + ++E+ +A+ GL + ++ A V A+ V +EP++SDDWEILE +AE+LE Q+L Q+ V +GQI+PIW+H +I LRV+ TP ++ + V+L+ D+E+ V+PKPR
Sbjct: 5 VTLRHSPNCFVNLPLKIAHTLAQRNESTQLILELKW-YDKANKEDKYAFVGWSGGXXXXXXXXXXXXXNDSLEMSQEMAQCLGLV----EGQMIRLKAASASAVQKATTVEVEPVTSDDWEILEVHAEYLEEQLLNQINVVSSGQIIPIWIHQKIVIHLRVIDV-TPKSSSXXXXNQPSAVKLSNDSEIIVAPKPR 194
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
A0A8J4PXJ1_9MYCE (Peroxin-1 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PXJ1_9MYCE)
HSP 1 Score: 98.6 bits (244), Expect = 1.820e-18
Identity = 62/180 (34.44%), Postives = 100/180 (55.56%), Query Frame = 2
Query: 110 NCFVNLPAHVARGLAGASE------GAVILRLSWDASPSTTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
+CFV+LP + + L SE G++ L L W + + W G S SG + ++ G A L S + V+V + + +A+ + +EPL+SDDWEILE N+ +LE Q+L QV + + GQI+PIW+H+ ++I LRV+ + A V+L+ ++E+ V+PKPR
Sbjct: 12 DCFVSLPPQIIQSLLAHSEKNSRSLGSLSLELGWYDKENKQDKK-VYVGWAGSASSVTSGGNSRCIEMSPQMGAALNLKSGQVVKVKVNTS--ISSATSIQVEPLTSDDWEILEVNSSYLEEQLLNQVNILFVGQIVPIWIHHKTMIQLRVLETQP-----ADVVKLSPNSEIIVAPKPR 183
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
A0A3M6T6L0_POCDA (Peroxin-1 n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6T6L0_POCDA)
HSP 1 Score: 98.6 bits (244), Expect = 1.870e-18
Identity = 67/186 (36.02%), Postives = 101/186 (54.30%), Query Frame = 2
Query: 83 AMVRLVKTKNCFVNLPAHVARGLAGASEGAVI-LRLSWDASPSTTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAG--LAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
A VR +KNCFV+L +A + +G L+L W+ + F SW+G ++ + G I + G A L D V VEP +P+ +R+ ++P+S++DWEILE +A ++E Q+L QV V + GQI+PIW+ N + +++V+ E A CVRL TEV VSPK R
Sbjct: 7 ACVRTNSSKNCFVSLSGDLAEAIGLRIQGQPFALQLQWENGKA-------FASWSGEVTRGKRGVILNDSSSIVQLGKKFADGLGLDDNQQVLVEPVVGIPSCNRINVDPVSANDWEILELHAGYIESQLLNQVRVVFPGQILPIWIENNMCVVVQIVNLEPD----ANCVRLDEFTEVIVSPKTR 181
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
A0A5J4YGC6_9CHLO (Peroxin-1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YGC6_9CHLO)
HSP 1 Score: 97.4 bits (241), Expect = 4.160e-18
Identity = 68/180 (37.78%), Postives = 99/180 (55.00%), Query Frame = 2
Query: 107 KNCFVNLP-AHVARGLAGASEGAVILRLSWDASP---STTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPRR 634
K+C+V LP A V++ + ++ +L L A+ ST +P SW G S Q +E+P ALA G+A + +V V+ +P A VC+EPLS DDWE++E NA H+E Q+L QV V GQ P W + + L+V +A A+ V+L D+EVAV+P+PRR
Sbjct: 27 KSCWVALPPALVSKLYSESASLRAVLELKRSATGRDRSTNAPESWHVSWGGAASKGQH--LEIPAALAGCLGIAQGI------TVSVQVVTDIPEAIGVCVEPLSVDDWEVVEQNAGHMEEQILSQVGVVQAGQAFPFWARQQTKLLLKVTTAHP-----ASLVQLARDSEVAVAPRPRR 193
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
F2E3I9_HORVV (Peroxin-1 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E3I9_HORVV)
HSP 1 Score: 96.7 bits (239), Expect = 7.630e-18
Identity = 68/178 (38.20%), Postives = 99/178 (55.62%), Query Frame = 2
Query: 110 NCFVNLPAHVARGL---AGASEGAVILRLSWDASPSTTSPSWTFTSWNGGLSDAQSG-AIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
+C+VNLPAH + A+ A+IL +S + + F W GG A++G IE A G +SVR A VP A+RV +EPLSSDDWEILEA++E+LE Q+L QVCV + G++ P+W+ + ++ +++V A A VRL D+E ++PKPR
Sbjct: 12 SCYVNLPAHAVGQIFDQQDANYSALILEVSGINEDGRSVRA--FVGWTGGF--AKNGKTIEFSGPFALTLGFR----ERQKVSVRSSAAKDVPLATRVHVEPLSSDDWEILEAHSEYLEEQILNQVCVVFEGEVFPLWIRHQTMAKIKIVQT-----APAKLVRLANDSEFVIAPKPR 176
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match:
A0A2B4RQK6_STYPI (Peroxin-1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQK6_STYPI)
HSP 1 Score: 95.5 bits (236), Expect = 1.940e-17
Identity = 67/186 (36.02%), Postives = 103/186 (55.38%), Query Frame = 2
Query: 83 AMVRLVKTKNCFVNLPAHVARGLAGASEGAVI-LRLSWDASPSTTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAG--LAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
A VR +KNCFV+L +A + +G L+L W+ + FTSW+G + ++ G I + G A AL D V VEP + + +R+ ++P+S++DWEILE +A ++E Q+L QV V + GQ++PIW+ N + +++V E P+ A CVRL TEV V+PK R
Sbjct: 7 ASVRTNSSKNCFVSLSGDLAEAVGLRIQGQPFALQLEWENGKA-------FTSWSGEVIHSRRGDILNDSSSIVQLGKKFADALGLDDEQQVLVEPVVGIASCNRISVDPVSANDWEILELHAGYIESQLLNQVRVVFPGQLLPIWIENNMCVVVQIVDLE-PN---ANCVRLDEFTEVIVTPKTR 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 5.08e-109 / Id = 74.80 Expect = 3.43e-73 / Id = 74.07 Expect = 2.00e-22 / Id = 36.73 Expect = 5.41e-20 / Id = 40.66 Expect = 7.49e-19 / Id = 35.20 Expect = 1.82e-18 / Id = 34.44 Expect = 1.87e-18 / Id = 36.02 Expect = 4.16e-18 / Id = 37.78 Expect = 7.63e-18 / Id = 38.20 Expect = 1.94e-17 / Id = 36.02 Sequence D7FVI2_ECTSI A0A6H5L6R6_9PHAE A0A7S2SM78_9STRA D3B6L3_POLPP F4PSY5_CAVFA A0A8J4PXJ1_9MYCE A0A3M6T6L0_POCDA A0A5J4YGC6_9CHLO F2E3I9_HORVV A0A2B4RQK6_STYPI Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 359.0 Seed ortholog evalue 2.2e-96 Seed eggNOG ortholog 2880.D7FVI2 Preferred name PEX1 KEGG ko ko:K05093,ko:K13338,ko:K13525 KEGG TC 3.A.16.1,3.A.20.1 KEGG Pathway ko01521,ko04010,ko04014,ko04015,ko04141,ko04144,ko04146,ko04151,ko04550,ko04810,ko05134,ko05200,ko05215,ko05226,ko05230,map01521,map04010,map04014,map04015,map04141,map04144,map04146,map04151,map04550,map04810,map05134,map05200,map05215,map05226,map05230 KEGG Module M00400,M00403 Hectar predicted targeting category mitochondrion GOs GO:0000003,GO:0000166,GO:0001881,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007017,GO:0007031,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007422,GO:0008022,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010001,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016043,GO:0016462,GO:0016558,GO:0016562,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017076,GO:0017111,GO:0019953,GO:0021782,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0030154,GO:0030554,GO:0031090,GO:0031903,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042063,GO:0042579,GO:0042623,GO:0042886,GO:0043112,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0044877,GO:0045184,GO:0046907,GO:0046982,GO:0046983,GO:0048137,GO:0048232,GO:0048468,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0051179,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0060151,GO:0060152,GO:0065002,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:1901265,GO:1901363 EggNOG free text desc. establishment of protein localization to peroxisome EggNOG OGs COG0464@1,COG0554@1,KOG0728@2759,KOG0735@2759 EC 2.7.10.1 COG Functional cat. O Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko00536,ko01000,ko01001,ko01020,ko03019,ko04050,ko04090,ko04131,ko04147 Exons 6 Model size 1197 Cds size 933 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815264.763864-UTR-P-lacustris_contig100:45754..45945 1622815264.763864-UTR-P-lacustris_contig100:45754..45945 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig100 45755..45945 - 1693493438.0480437-UTR-P-lacustris_contig100:45754..45945 1693493438.0480437-UTR-P-lacustris_contig100:45754..45945 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig100 45755..45945 - 1622815265.4511762-UTR-P-lacustris_contig100:48968..49041 1622815265.4511762-UTR-P-lacustris_contig100:48968..49041 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig100 48969..49041 - 1693493438.1234283-UTR-P-lacustris_contig100:48968..49041 1693493438.1234283-UTR-P-lacustris_contig100:48968..49041 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig100 48969..49041 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815264.7743413-CDS-P-lacustris_contig100:45945..46127 1622815264.7743413-CDS-P-lacustris_contig100:45945..46127 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 45946..46127 - 1693493438.0650055-CDS-P-lacustris_contig100:45945..46127 1693493438.0650055-CDS-P-lacustris_contig100:45945..46127 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 45946..46127 - 1622815264.7850425-CDS-P-lacustris_contig100:46400..46562 1622815264.7850425-CDS-P-lacustris_contig100:46400..46562 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 46401..46562 - 1693493438.074632-CDS-P-lacustris_contig100:46400..46562 1693493438.074632-CDS-P-lacustris_contig100:46400..46562 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 46401..46562 - 1622815264.8014212-CDS-P-lacustris_contig100:47173..47363 1622815264.8014212-CDS-P-lacustris_contig100:47173..47363 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 47174..47363 - 1693493438.0839102-CDS-P-lacustris_contig100:47173..47363 1693493438.0839102-CDS-P-lacustris_contig100:47173..47363 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 47174..47363 - 1622815264.816066-CDS-P-lacustris_contig100:47688..47893 1622815264.816066-CDS-P-lacustris_contig100:47688..47893 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 47689..47893 - 1693493438.0930212-CDS-P-lacustris_contig100:47688..47893 1693493438.0930212-CDS-P-lacustris_contig100:47688..47893 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 47689..47893 - 1622815264.8270042-CDS-P-lacustris_contig100:48162..48263 1622815264.8270042-CDS-P-lacustris_contig100:48162..48263 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 48163..48263 - 1693493438.1018755-CDS-P-lacustris_contig100:48162..48263 1693493438.1018755-CDS-P-lacustris_contig100:48162..48263 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 48163..48263 - 1622815264.8385744-CDS-P-lacustris_contig100:48875..48968 1622815264.8385744-CDS-P-lacustris_contig100:48875..48968 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 48876..48968 - 1693493438.1120217-CDS-P-lacustris_contig100:48875..48968 1693493438.1120217-CDS-P-lacustris_contig100:48875..48968 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig100 48876..48968 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig100.101.1
>prot_P-lacustris_contig100.101.1 ID=prot_P-lacustris_contig100.101.1|Name=mRNA_P-lacustris_contig100.101.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=311bp
MVRAMVRLVKTKNCFVNLPAHVARGLAGASEGAVILRLSWDASPSTTSPS back to top mRNA from alignment at P-lacustris_contig100:45755..49041-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig100.101.1 ID=mRNA_P-lacustris_contig100.101.1|Name=mRNA_P-lacustris_contig100.101.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3287bp|location=Sequence derived from alignment at P-lacustris_contig100:45755..49041- (Pleurocladia lacustris SAG_25_93)GGAGCTCCCAATCACTGCAATCGTGGAAGAGCACGCACACAAGTGCAGCG
TCTGCCGACCGGCGCTGCCCACG ATGGTGCGTGCGATGGTGCGGTTGGTG
AAAACCAAGAACTGCTTCGTCAATCTTCCCGCTCATGTGGCCAGGGGCCT
GGCGGGCGCATCGGAG GTGAGTTTCTTGAACTCAACTCCACCGGCTCTCA
GTCCAACTTTGCTCTCTCTCTCGGAATCACCACCACAGCGGTCGAAGCAG
TTGTGTCGTGTTATCTTGGCGACAAGTTAAGCAGAAGTATCAATCCTCCC
TCCCCCCTGTGCGTCAATGCACAGGTGTAGGACAACTCTTTCACTTCAAA
GAAGTAGTTGTACCTGCTGGCGTAGGTGTTACAACTACCAAGGAAAGAGC
TGACAACATGACCAGCCCATATGTCGTCGGGGACCAGCAGGGATGATCGC
AACCTTAGCTACGAATGCTGTTGGTCAGCTGCAACAGTTCGTATACTACT
GTGCAGGTCGGGCCCATTCGTCGCGGGCGAGCTCTCTTGCTAAGTACAGA
GTTGCCGTCTGCTTAACGTTTTTCCCTAAATACGCGGCCCTGCAATCCGC
GGCATTGTCGGCTTCCGCCATTCAGCATTGGGCAGCTTACACCGGAGCGT
TGAGGCGTTCGCACCGAGCAATGAGAGCTGTGTTACACACGACGGCTGCT
GTGTTACCTTACGTTTGTTGTTCAACGTTGGCCACTCTACTCGCGTCGAA
AAACAATTCCGCAAAATTTAAACTACAGGGCGCGGTTATCCTGCGGCTGT
CTTGGGACGCATCGCCATCTACAACATCGCCATCGTGGACGTTCACTTCT
TGGAATGGAGGTCTCAGCGACGCGCAAAG GTTTGGCCGCCGCTTTTGGAG
CGCACTTGACTCGAACAAAAAAGAAGCACCCAGAGGGCGAAATATCGCTG
CAGCCGTTGTAGCCGTTGTAGCCATTTGAAACATGTGTACGCGTTCGGTA
TCCGTCTGGTCTCTTACGGACAGCTTGGCGGCGCATGTTGGGAGCGCAGT
CTCCTTCTCTGCACAAGTCACAACTATCCCCAGTCTTTACACAGCCCTTC
CGTTGTTCGGACGAAAAATGAGGTCGTCGTTTCGCTCGACTGTCGCAGCG
GCGCGATCGAGGTTCCACTGGCGCTGGCGCGAGTAGCTGGGCTGGCCGCG
GCGCTCGACTCAGATGCATACCTGTCGGTCCGGGTAGAGCCGGCGGGGTA
CGTACCTACCGCGTCGCGCGTGTGCCTGGAGCCGCTCTCTAGCGACGACT
GGGAGATTCTGGAGGCCAACGCGGAGCATTTAGAGGGGCAGATGCTAGTG
CAG GTGGGTGGTGACGTGGGTGCTACGTGTCCGTTTCCTTCAGGACCCAA
TAAATCCCGCCCAAGACGGAGCCCCGTTATTCTCGGTCGTCCACTCGCTC
ACGGCGTGCTCGGGTAGGGACTTGGAGTTGGAGGAGGGGGGGTTGAACTT
TTTCGGTTTTTCTTTGATCAACTTATTTTGCGCGAAGGTGTCCTGGGCCG
GACGTGTGTGTGCCAGCTCAGGCAGACATGCAGAAAAAACAAAAAACTAA
TCAGGAACGTGTTCATTCCCCCTCCGCGAAGCCCTGGCTCATTTTGAACG
TACTCTCGCCGCGTGCTTGCAAAACCAGGTGTGCGTGGCCTACACGGGCC
AAATCATGCCTATCTGGGTCCACAACACGTCGCTCATCGCTCTCCGAGTC
GTGTCCGCCGAGACTCCCCACGGTGCGGCCGCTGCCTGCGTTAGGCTTAC
GGCCGACACGGAGGTGGCTGTCTCTCCAAAACCTCGACGCCGAACGCGTT
TGCGAGAAGGAGGAGAAA GTGAGCCCTCCCCCCGTTCTACCATATGCAAT
ATGCCGCTTGCCCAACGTCTCGCTGCTCTCATGGCGCTTGGGCGCGGCGC
TCTAATGGTTGGCATGCAACCATGCCGCCGGCGTATGGTGCATTGGTGTC
ATGTGGAAGATAGAGGGTGGGACCTGCTGTCTAGTTTGAAGTCAACAATA
GTAAGGGATGGTCGGGAATATGTACAGCTTTCTGTTTGCCGGGCTGCCAG
CCGAACGTAGGCGCCAGGCCGCCTTGGCACATCTGGGTGATTTGTTCGCC
TGGGACAACCGTTCGATTTATTTCCCTCGTACCTCGTGTTTATTCAGCTT
GTTGCGTGCCTAGATCCGTAGCCGGTGTGGTCCCGGCATTAGCCAGAGTG
AAAGGACTGCCCCCGGGTCCGCCCCCCCCGCCCGCCCATGCTTAACGCGG
GCCGCGTGATTCGCTTTATCCCTGCCAACGCCCCCGTGCCTATGACGCTT
TCGGCAAGGGGGAAGCTCGAGGCTTTCGGAGACACCTTGCCATTATGCCG
GGCGACGTATTCTTGGAATTGTGTCCCCATCTCTGCTTGTATGCCTGCCT
GCTTTTGTGCCGGACGCATGAAACACCAGGACAACAGCGATTTCGCTCGA
GTGGGCTCCTGAGGGTAGCCCCTCCGCCCCCCGGATGGCAAGCCGATGGA
GCGGCCGCGCGTGGCGATTGCAGCGGCTGCGCCCGCCCGTACCTGCTCGT
GCACCCGCTACTCTCGCAGGAGTCGACGGGTGGAATAGCAG GTAACCCTA
TACCTGGTTGTTGCGAATACTCAGCAGACAAAATGGAACCCTTTCCTGGG
TTTCTCTCACATGACTTCTGACGAGCAGTACACAAAACAGCCCACACGCT
TCGCTTGACCCCTGGCACTTGTTATTGCCTTTAAAAGATGGGTCTGTCTT
TCTATCGCGCGTCCCCGCACCCACGCACCCGTTATTTCCCGCCCAACGAA
ACTTTCCGAAACCAACTCAACGGCGTGACCTCGCGCGCCGCCCTCATCCC
ACCCGCTTACGAAGTCAAGTTCGAGGGCCCCGTGGCCCTCCGTCATCCTC
GGCGATGGTGGCCCTGCTGCATCCCCGTCGACTTCACCCCCGCCCAACGA
GGCGCTAGCAGTTCTGTGGCGGGACGGGTCGTCGTGCAGGCGAGGGAGCG
GAAAGGGAACCGGCATCCGCCAGGAAGGAGAGGGACAACAAGGTAA CGGC
GGCGGCGGCGGCGGTGATGGTGGCTGGTTGGCTACGGCGGTGGAGGCGGG
CCGCGGAAACGCCGGCCGCGGAAAAAGCAACGCGGAATTACCACGGGAAA
GAAAAGGAGGGCACGAGAGAGGGATCGTCGTGATCCTGAGGGAGGATGCT
AGGATTCCTCCGAGTCACGTGGCAGAGGCGGCGGGGG back to top Coding sequence (CDS) from alignment at P-lacustris_contig100:45755..49041-
>mRNA_P-lacustris_contig100.101.1 ID=mRNA_P-lacustris_contig100.101.1|Name=mRNA_P-lacustris_contig100.101.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1866bp|location=Sequence derived from alignment at P-lacustris_contig100:45755..49041- (Pleurocladia lacustris SAG_25_93) back to top