mRNA_P-lacustris_contig100.101.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: D7FVI2_ECTSI (Peroxin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI2_ECTSI) HSP 1 Score: 356 bits (914), Expect = 5.080e-109 Identity = 190/254 (74.80%), Postives = 206/254 (81.10%), Query Frame = 2 Query: 74 MVRAMVRLVKTKNCFVNLPAHVARGLAGASEGAVILRLSWDAS----PSTTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGA-AAACVRLTADTEVAVSPKPRRRTRLREGGERQQRFRSSGLLRVAPPPPGWQADGAAARGDC--SGCARPYLLVHPLLSQESTG 814
MVRA VRLVKTKNCFVN+PAHVARGL GASEGAVILRLSWD + +TT+PSW F SWNGG+SDAQSGAIEVPLALA+V GLAAALD+D+YLSV EPAGYVPTASRVCLEPLS DDWEILEANAEHLEG ML QVCVAYTGQ+MPIWVHNTSLI+L+VVS ETP GA AA CVRLTADTEVAVSPK G R+QRFRSSGLLRVAPPPPGW+ + A + SGC RPY+L HP E G
Sbjct: 1 MVRATVRLVKTKNCFVNIPAHVARGLDGASEGAVILRLSWDGAVAEAAATTTPSWAFASWNGGISDAQSGAIEVPLALAQVLGLAAALDADSYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVCVAYTGQVMPIWVHNTSLISLQVVSVETPGGAPAAGCVRLTADTEVAVSPKXXXXXXXXXGEPRRQRFRSSGLLRVAPPPPGWKLEETALARNSGGSGCGRPYVLAHPATLTEIDG 254
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: A0A6H5L6R6_9PHAE (Peroxin-1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R6_9PHAE) HSP 1 Score: 258 bits (660), Expect = 3.430e-73 Identity = 140/189 (74.07%), Postives = 149/189 (78.84%), Query Frame = 2 Query: 257 DAQSGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGA-AAACVRLTADTEVAVSPKPRRRTRLREGGERQQRFRSSGLLRVAPPPPGWQADGAAAR--GDCSGCARPYLLVHPLLSQESTG 814
D+ SGAIEVPLALA+V GLAAALDSDAYLSV EPAGYVPTASRVCLEPLS DDWEILEANAEHLEG ML QVCVAYTGQ+MPIWVHNT LI+L+VVS E P GA AA CVRLTADTEVAVSPK EG RQ+RFRSSGLLRVA PPPGW+ +G A G SGC RPY+L HP E G
Sbjct: 6 DSSSGAIEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVCVAYTGQVMPIWVHNTLLISLQVVSVEIPGGAPAAGCVRLTADTEVAVSPKXXXXXXXXEGEPRQERFRSSGLLRVASPPPGWKLEGTALGRIGGGSGCGRPYVLAHPATLTEIDG 194
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: A0A7S2SM78_9STRA (Peroxin-1 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SM78_9STRA) HSP 1 Score: 110 bits (275), Expect = 2.000e-22 Identity = 72/196 (36.73%), Postives = 106/196 (54.08%), Query Frame = 2 Query: 89 VRLVKTKNCFVNLPAHVARGLAGA----SEGAVILRLSWDASPSTTS-----PSWTFTSWNGGLSDAQSGAIEVPLALARVAGLAAALD------SDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
V +V N FV +P+ + + + S G V LR+ W P+ +S PS +F W ++D ++VP+ALA GL A+D D+ L V V Y P ASRV ++P+++DDWEIL+ +A +E ++L Q+CV GQ P+W+H + I L+V S A CVRL +TEV V+PK R
Sbjct: 14 VVVVNGTNNFVGIPSRFCQNIRASFPQKSHGVVALRIGWLGPPNNSSGGLARPSQSFVGWTSQVADGHF--LQVPVALAESIGLKDAVDFATKTAPDSPLVVSVAVIPYAPVASRVDVDPVTADDWEILQLHANFVESELLSQICVLGPGQQFPMWIHGRTRINLQVSSIALVEKGQALCVRLARNTEVVVAPKLR 207
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: D3B6L3_POLPP (Peroxin-1 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B6L3_POLPP) HSP 1 Score: 103 bits (256), Expect = 5.410e-20 Identity = 74/182 (40.66%), Postives = 102/182 (56.04%), Query Frame = 2 Query: 110 NCFVNLPAHVARGLAGASE------GAVILRLSWDASPSTTSPSWTFTSWNGGLSDAQSG--AIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
NCFV LP + L +E ++ L LSW ST W+GG SD SG AIE+ L G+A ++V+ + G VP A+ V +EPL+SDDWEILE + E+LE Q+L QV V GQI+PIW+H++++I L++V A + VRLT E+AV+PKPR
Sbjct: 12 NCFVCLPPKIVHSLFLLAEKNAISVNSLTLELSW-YDKSTKKERKINVGWSGGASDPSSGPDAIEMNAELGDAIGIA----DHTRVTVKAQ-IGSVPQATSVQVEPLTSDDWEILELHQEYLEQQILNQVNVMTRGQIVPIWIHHSTIIKLKIVDT-----APSEIVRLTNQVEIAVAPKPR 182
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: F4PSY5_CAVFA (Peroxin-1 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PSY5_CAVFA) HSP 1 Score: 99.8 bits (247), Expect = 7.490e-19 Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 2 Query: 89 VRLVKTKNCFVNLPAHVARGLAGASEGA-VILRLSWDASPSTTSPSWTFTSWNGGLSDAQ--------SGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAA------ACVRLTADTEVAVSPKPR 631
V L + NCFVNLP +A LA +E +IL L W + + F W+GG + ++E+ +A+ GL + ++ A V A+ V +EP++SDDWEILE +AE+LE Q+L Q+ V +GQI+PIW+H +I LRV+ TP ++ + V+L+ D+E+ V+PKPR
Sbjct: 5 VTLRHSPNCFVNLPLKIAHTLAQRNESTQLILELKW-YDKANKEDKYAFVGWSGGXXXXXXXXXXXXXNDSLEMSQEMAQCLGLV----EGQMIRLKAASASAVQKATTVEVEPVTSDDWEILEVHAEYLEEQLLNQINVVSSGQIIPIWIHQKIVIHLRVIDV-TPKSSSXXXXNQPSAVKLSNDSEIIVAPKPR 194
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: A0A8J4PXJ1_9MYCE (Peroxin-1 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PXJ1_9MYCE) HSP 1 Score: 98.6 bits (244), Expect = 1.820e-18 Identity = 62/180 (34.44%), Postives = 100/180 (55.56%), Query Frame = 2 Query: 110 NCFVNLPAHVARGLAGASE------GAVILRLSWDASPSTTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
+CFV+LP + + L SE G++ L L W + + W G S SG + ++ G A L S + V+V + + +A+ + +EPL+SDDWEILE N+ +LE Q+L QV + + GQI+PIW+H+ ++I LRV+ + A V+L+ ++E+ V+PKPR
Sbjct: 12 DCFVSLPPQIIQSLLAHSEKNSRSLGSLSLELGWYDKENKQDKK-VYVGWAGSASSVTSGGNSRCIEMSPQMGAALNLKSGQVVKVKVNTS--ISSATSIQVEPLTSDDWEILEVNSSYLEEQLLNQVNILFVGQIVPIWIHHKTMIQLRVLETQP-----ADVVKLSPNSEIIVAPKPR 183
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: A0A3M6T6L0_POCDA (Peroxin-1 n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6T6L0_POCDA) HSP 1 Score: 98.6 bits (244), Expect = 1.870e-18 Identity = 67/186 (36.02%), Postives = 101/186 (54.30%), Query Frame = 2 Query: 83 AMVRLVKTKNCFVNLPAHVARGLAGASEGAVI-LRLSWDASPSTTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAG--LAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
A VR +KNCFV+L +A + +G L+L W+ + F SW+G ++ + G I + G A L D V VEP +P+ +R+ ++P+S++DWEILE +A ++E Q+L QV V + GQI+PIW+ N + +++V+ E A CVRL TEV VSPK R
Sbjct: 7 ACVRTNSSKNCFVSLSGDLAEAIGLRIQGQPFALQLQWENGKA-------FASWSGEVTRGKRGVILNDSSSIVQLGKKFADGLGLDDNQQVLVEPVVGIPSCNRINVDPVSANDWEILELHAGYIESQLLNQVRVVFPGQILPIWIENNMCVVVQIVNLEPD----ANCVRLDEFTEVIVSPKTR 181
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: A0A5J4YGC6_9CHLO (Peroxin-1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YGC6_9CHLO) HSP 1 Score: 97.4 bits (241), Expect = 4.160e-18 Identity = 68/180 (37.78%), Postives = 99/180 (55.00%), Query Frame = 2 Query: 107 KNCFVNLP-AHVARGLAGASEGAVILRLSWDASP---STTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPRR 634
K+C+V LP A V++ + ++ +L L A+ ST +P SW G S Q +E+P ALA G+A + +V V+ +P A VC+EPLS DDWE++E NA H+E Q+L QV V GQ P W + + L+V +A A+ V+L D+EVAV+P+PRR
Sbjct: 27 KSCWVALPPALVSKLYSESASLRAVLELKRSATGRDRSTNAPESWHVSWGGAASKGQH--LEIPAALAGCLGIAQGI------TVSVQVVTDIPEAIGVCVEPLSVDDWEVVEQNAGHMEEQILSQVGVVQAGQAFPFWARQQTKLLLKVTTAHP-----ASLVQLARDSEVAVAPRPRR 193
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: F2E3I9_HORVV (Peroxin-1 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E3I9_HORVV) HSP 1 Score: 96.7 bits (239), Expect = 7.630e-18 Identity = 68/178 (38.20%), Postives = 99/178 (55.62%), Query Frame = 2 Query: 110 NCFVNLPAHVARGL---AGASEGAVILRLSWDASPSTTSPSWTFTSWNGGLSDAQSG-AIEVPLALARVAGLAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
+C+VNLPAH + A+ A+IL +S + + F W GG A++G IE A G +SVR A VP A+RV +EPLSSDDWEILEA++E+LE Q+L QVCV + G++ P+W+ + ++ +++V A A VRL D+E ++PKPR
Sbjct: 12 SCYVNLPAHAVGQIFDQQDANYSALILEVSGINEDGRSVRA--FVGWTGGF--AKNGKTIEFSGPFALTLGFR----ERQKVSVRSSAAKDVPLATRVHVEPLSSDDWEILEAHSEYLEEQILNQVCVVFEGEVFPLWIRHQTMAKIKIVQT-----APAKLVRLANDSEFVIAPKPR 176
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Match: A0A2B4RQK6_STYPI (Peroxin-1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQK6_STYPI) HSP 1 Score: 95.5 bits (236), Expect = 1.940e-17 Identity = 67/186 (36.02%), Postives = 103/186 (55.38%), Query Frame = 2 Query: 83 AMVRLVKTKNCFVNLPAHVARGLAGASEGAVI-LRLSWDASPSTTSPSWTFTSWNGGLSDAQSGAIEVPLALARVAG--LAAALDSDAYLSVRVEPAGYVPTASRVCLEPLSSDDWEILEANAEHLEGQMLVQVCVAYTGQIMPIWVHNTSLIALRVVSAETPHGAAAACVRLTADTEVAVSPKPR 631
A VR +KNCFV+L +A + +G L+L W+ + FTSW+G + ++ G I + G A AL D V VEP + + +R+ ++P+S++DWEILE +A ++E Q+L QV V + GQ++PIW+ N + +++V E P+ A CVRL TEV V+PK R
Sbjct: 7 ASVRTNSSKNCFVSLSGDLAEAVGLRIQGQPFALQLEWENGKA-------FTSWSGEVIHSRRGDILNDSSSIVQLGKKFADALGLDDEQQVLVEPVVGIASCNRISVDPVSANDWEILELHAGYIESQLLNQVRVVFPGQLLPIWIENNMCVVVQIVDLE-PN---ANCVRLDEFTEVIVTPKTR 181 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig100.101.1 >prot_P-lacustris_contig100.101.1 ID=prot_P-lacustris_contig100.101.1|Name=mRNA_P-lacustris_contig100.101.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=311bp MVRAMVRLVKTKNCFVNLPAHVARGLAGASEGAVILRLSWDASPSTTSPSback to top mRNA from alignment at P-lacustris_contig100:45755..49041- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig100.101.1 ID=mRNA_P-lacustris_contig100.101.1|Name=mRNA_P-lacustris_contig100.101.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3287bp|location=Sequence derived from alignment at P-lacustris_contig100:45755..49041- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig100:45755..49041- >mRNA_P-lacustris_contig100.101.1 ID=mRNA_P-lacustris_contig100.101.1|Name=mRNA_P-lacustris_contig100.101.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1866bp|location=Sequence derived from alignment at P-lacustris_contig100:45755..49041- (Pleurocladia lacustris SAG_25_93)back to top |