mRNA_P-lacustris_contig10.89.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig10.89.1
Unique NamemRNA_P-lacustris_contig10.89.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig10.89.1 vs. uniprot
Match: D8LHX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX8_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.470e-45
Identity = 75/103 (72.82%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    1 MKGASATSGFLTCIVCGELKPTSDFTRNQLARPGRPLCNQCLMREGAVAPPPSRVAPAAGEGYVRCVACCQVKATSAFGINQLRRRAGIERCMSCVENDVGAV 309
            M+GASA SG +TC VCG  KP S+++RNQLAR  R +C  CLM +G VA PPSRVAPAAGEG VRCVACCQVK TS+FGINQLRRRAGIERCM CVE D+G+V
Sbjct:    1 MQGASA-SGAITCTVCGVRKPASEYSRNQLARSSREVCQVCLMSDGTVAAPPSRVAPAAGEGVVRCVACCQVKTTSSFGINQLRRRAGIERCMLCVEKDLGSV 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig10.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHX8_ECTSI3.470e-4572.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig10contigP-lacustris_contig10:309736..310161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionStc1 domain
Ec32 orthologEc-18_000880.1
Exons1
Model size426
Cds size426
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815258.8734453-CDS-P-lacustris_contig10:309735..3101611622815258.8734453-CDS-P-lacustris_contig10:309735..310161Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 309736..310161 -
1693493436.3433232-CDS-P-lacustris_contig10:309735..3101611693493436.3433232-CDS-P-lacustris_contig10:309735..310161Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 309736..310161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig10.89.1prot_P-lacustris_contig10.89.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig10 309736..310161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig10.89.1

>prot_P-lacustris_contig10.89.1 ID=prot_P-lacustris_contig10.89.1|Name=mRNA_P-lacustris_contig10.89.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=142bp
MKGASATSGFLTCIVCGELKPTSDFTRNQLARPGRPLCNQCLMREGAVAP
PPSRVAPAAGEGYVRCVACCQVKATSAFGINQLRRRAGIERCMSCVENDV
GAVVLCIACHAPKPFTEFSKKQLACKPGSARCKACIESASR*
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mRNA from alignment at P-lacustris_contig10:309736..310161-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig10.89.1 ID=mRNA_P-lacustris_contig10.89.1|Name=mRNA_P-lacustris_contig10.89.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=426bp|location=Sequence derived from alignment at P-lacustris_contig10:309736..310161- (Pleurocladia lacustris SAG_25_93)
ATGAAGGGTGCATCGGCGACAAGCGGCTTCCTCACGTGCATCGTCTGTGG
CGAGCTGAAGCCGACCTCCGACTTCACTCGTAACCAGCTGGCCAGGCCGG
GGAGGCCTCTGTGTAACCAGTGCCTCATGAGAGAGGGAGCGGTCGCGCCA
CCCCCGTCGCGGGTAGCGCCCGCTGCGGGCGAGGGCTATGTTCGGTGCGT
TGCTTGCTGCCAGGTCAAGGCTACATCGGCGTTCGGCATCAACCAGCTCC
GTCGCCGTGCGGGCATCGAGCGCTGCATGTCATGCGTGGAGAACGATGTT
GGAGCGGTTGTGCTCTGCATTGCCTGTCACGCACCGAAGCCTTTCACGGA
ATTCAGCAAGAAACAACTCGCGTGCAAGCCCGGGTCGGCAAGGTGCAAGG
CCTGCATCGAGAGCGCCTCGCGGTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig10:309736..310161-

>mRNA_P-lacustris_contig10.89.1 ID=mRNA_P-lacustris_contig10.89.1|Name=mRNA_P-lacustris_contig10.89.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=852bp|location=Sequence derived from alignment at P-lacustris_contig10:309736..310161- (Pleurocladia lacustris SAG_25_93)
ATGAAGGGTGCATCGGCGACAAGCGGCTTCCTCACGTGCATCGTCTGTGG
CGAGCTGAAGCCGACCTCCGACTTCACTCGTAACCAGCTGGCCAGGCCGG
GGAGGCCTCTGTGTAACCAGTGCCTCATGAGAGAGGGAGCGGTCGCGCCA
CCCCCGTCGCGGGTAGCGCCCGCTGCGGGCGAGGGCTATGTTCGGTGCGT
TGCTTGCTGCCAGGTCAAGGCTACATCGGCGTTCGGCATCAACCAGCTCC
GTCGCCGTGCGGGCATCGAGCGCTGCATGTCATGCGTGGAGAACGATGTT
GGAGCGGTTGTGCTCTGCATTGCCTGTCACGCACCGAAGCCTTTCACGGA
ATTCAGCAAGAAACAACTCGCGTGCAAGCCCGGGTCGGCAAGGTGCAAGG
CCTGCATCGAGAGCGCCTCGCGGTGAATGAAGGGTGCATCGGCGACAAGC
GGCTTCCTCACGTGCATCGTCTGTGGCGAGCTGAAGCCGACCTCCGACTT
CACTCGTAACCAGCTGGCCAGGCCGGGGAGGCCTCTGTGTAACCAGTGCC
TCATGAGAGAGGGAGCGGTCGCGCCACCCCCGTCGCGGGTAGCGCCCGCT
GCGGGCGAGGGCTATGTTCGGTGCGTTGCTTGCTGCCAGGTCAAGGCTAC
ATCGGCGTTCGGCATCAACCAGCTCCGTCGCCGTGCGGGCATCGAGCGCT
GCATGTCATGCGTGGAGAACGATGTTGGAGCGGTTGTGCTCTGCATTGCC
TGTCACGCACCGAAGCCTTTCACGGAATTCAGCAAGAAACAACTCGCGTG
CAAGCCCGGGTCGGCAAGGTGCAAGGCCTGCATCGAGAGCGCCTCGCGGT
GA
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