mRNA_P-wetherbeei_contig16351.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16351.1.1
Unique NamemRNA_P-wetherbeei_contig16351.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: D8LI32_ECTSI (GRIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI32_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.670e-26
Identity = 74/132 (56.06%), Postives = 91/132 (68.94%), Query Frame = 1
Query:   22 GESNQE-LQDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQRRDEAAAGIGAEPLAMLRRVEEGGAQWVLLEY--EGGGKGWKSFSNEAEVADFVRR-DGAEPLAVPAASLPPERSEQV 405
            G + QE +Q+TLAK+KRLLSLARRSIEENQRQI EKD   AALR  L  A+ A+RRD+  AG  A PL +LRRV EGG  W+L+EY  E   +GWK F++EA V++F    +  EPL +P  SL PE S  V
Sbjct:   27 GTAEQENVQETLAKFKRLLSLARRSIEENQRQITEKDGQLAALREALGAAENARRRDDEHAG--ATPLQLLRRVREGGMWWLLVEYDDEYETQGWKGFADEAAVSEFANSVNVGEPLNIPPVSLSPEESATV 156          
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: A0A835YNU9_9STRA (GRIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.870e-20
Identity = 62/127 (48.82%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   43 QDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQRRDEAAAGIGAEPLAMLRRVEEGGAQWVLLEYEGGGK------GWKSFSNEAEVADFVRRDGAEPLAVPAASLPPERSEQV 405
            + TLAKYKRLL+LARRSIEENQRQ           R +L   Q AQR+ +      AEPLA+LRRV+  G  W+LLE+E           W+ F +  EV  F RR GAEPL VPA SL PE  E +
Sbjct:   26 ESTLAKYKRLLTLARRSIEENQRQXXXXXXXXXXXRDELSQTQAAQRQSQP---TDAEPLAVLRRVDHDGFTWLLLEHEXXXXXXETVLAWRKFESVDEVQAFARRPGAEPLVVPACSLSPEECEAI 149          
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: A0A7S4D4P1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4P1_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 2.300e-13
Identity = 43/132 (32.58%), Postives = 81/132 (61.36%), Query Frame = 1
Query:   28 SNQELQDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQRRDEAAA-GIGAEPLAMLRRVEEGGAQWVLLEYEG------GGKGWKSFSNEAEVADFVRRDGAEPLAVPAASLPPERSEQ 402
            ++Q+L++T+ KYK+LLS+AR+ +E+NQR +++KD     L+ +LE++++   ++ A   G+   P  ++RRV++ G  WVL E+            W+ F++  E+ DFV+    EP+ +P A L  + ++Q
Sbjct:   22 ASQQLKETILKYKKLLSMARQGLEDNQRHLSDKDEQIRQLQHELESSKQRNAKENAKTRGLEMNPKRIVRRVDQDGVIWVLFEWYSVETDARSPPSWREFNSYGELEDFVQCVSGEPIEIPPACLTSDETQQ 153          
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: A0A482SXA9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXA9_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 5.320e-11
Identity = 51/132 (38.64%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   28 SNQELQDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQ------RRDEAAAGIGAEPLAMLRRVEEGGAQWVLLEYEGGGKGWKSFSNEAEVADFVRRDGAEPLAVPAASLPPERSEQV 405
            ++Q  ++TLAKYKRLLS+AR S+E NQ  +  KD   + L A LE  +  +      R DE   G    P  +L RV+  G  WVL E E     WKSFS+E+ + D+++R    PL  P   L  E S ++
Sbjct:   12 NSQGQEETLAKYKRLLSMARSSLESNQAALTAKDQQISQLLAVLEEERNKRVSSRIIRDDE---GGQQYPRRILCRVDVEGQIWVLFEMESTEDDWKSFSDESGLQDYLKRIPGIPLVCPTKCLSAEESAKL 140          
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: A0A6A3FS57_9STRA (GRIP domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FS57_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.990e-11
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   34 QELQDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQRRDEAAAGIGAEPLAMLRRVEEGGAQWVLLEY-------EGGGKGWKSFSNEAEVADFVRRDGAEPLAVPAASLPPERSEQV 405
            QE++DT  K KRLL++A+RSI+ ++++IAEKDA    LR +L  +++ Q    A      +P  +L +V  G   W L+EY       E     W  F +EAE+  +  R   EPL +P  SL P   E+V
Sbjct:   70 QEMEDTENKLKRLLAMAKRSIDNSKQEIAEKDAAIQQLREELAKSRQTQH-SWAVDAATRDPRQLLHKVSHGNLLWCLVEYADESELDEAKEFAWHCFRSEAEIQAYANRASGEPLTLPDFSLTPYEVERV 199          
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: V9EJ60_PHYPR (GRIP domain-containing protein n=45 Tax=Phytophthora TaxID=4783 RepID=V9EJ60_PHYPR)

HSP 1 Score: 66.6 bits (161), Expect = 2.150e-9
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   34 QELQDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQRRDEAAAGIGAEPLAMLRRVEEGGAQWVLLEYEGGGK-------GWKSFSNEAEVADFVRRDGAEPLAVPAASLPPERSEQV 405
            QE+++T  K KRLL++A+RSI+ +++++AEKD     LR +L  +Q+A R          +P  +L +V  G   W L+EY    +        W  F NE E+ ++  R   EPL +P  S+ P   E+V
Sbjct:   76 QEMEETENKLKRLLAMAKRSIDNSKQELAEKDETIQKLREELAKSQQA-RHSWFVDASTRDPRQLLHKVAHGNLLWCLVEYVNENELDDSTEFAWHCFHNEVEIQEYANRATGEPLTLPDLSMAPYEVERV 205          
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: A0A8K1CW38_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CW38_PYTOL)

HSP 1 Score: 66.2 bits (160), Expect = 3.510e-9
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 1
Query:   34 QELQDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQRRDEAAAGIGAEPLAMLRRVEEGGAQWVLLEYEGGGK------GWKSFSNEAEVADFVRRDGAEPLAVPAASLPPERSEQV 405
            QE+++T  K KRLL++A+RSI+ +++++A+KDA    LRA+L T   A    E       +P  +L +V +G   W L+EY            W  F +E ++  +  R   EPLA+P+ SL P   E++
Sbjct:   55 QEMEETETKLKRLLAMAKRSIDNSKQELADKDAEIEQLRAELATKAHASHTWETNETTR-DPRRILSKVAQGNTLWCLVEYASDDSDDTSDFAWHRFQSEEQIKAYANRANGEPLALPSLSLTPFEVERM 183          
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: A0A5D6XWN8_9STRA (GRIP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWN8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.740e-9
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   34 QELQDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQR--RDEAAAGIGAEPLAMLRRVEEGGAQWVLLEYEGGGK-------GWKSFSNEAEVADFVRRDGAEPLAVPAASLPPERSEQV 405
            QEL+DT AK KRLL++A+RSI+ +++ IA KDA    LRAQL     A    R +AA     +P  +L ++  G A W L+EY             W  F++  E+  +  R   EP+ +P  SL P  SE+ 
Sbjct:   56 QELEDTEAKLKRLLAMAKRSIDNSKQDIAAKDAELDELRAQLAKRAAASHSWRPDAATR---DPKRVLHKIAHGSALWCLVEYANESDVDDAQEFAWHRFASAEELRAYAARASGEPIVLPELSLTPFESERA 185          
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: H3GH33_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH33_PHYRM)

HSP 1 Score: 65.5 bits (158), Expect = 4.670e-9
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 1
Query:   34 QELQDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQRRDEAAAGIGAEPLAMLRRVEEGGAQWVLLEY-------EGGGKGWKSFSNEAEVADFVRRDGAEPLAVPAASLPPERSEQV 405
            QE+++T  K KRLL++A+RSI+ +++++ EKD +   LR +L  +Q+A R           P  +L +V  GG  W L+EY       +     W  F +E E+  +  R   EPL +P  SL P   E+V
Sbjct:   15 QEMEETETKLKRLLAMAKRSIDNSKQELVEKDEVIEKLRDELSKSQQA-RHSWVVDASTRSPRQLLHKVSHGGLLWCLVEYADEIEFEDSKEFAWHCFRDEGEIQAYADRASGEPLTLPDFSLTPYEVERV 144          
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Match: A0A3R7KVI4_9STRA (GRIP domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KVI4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.280e-9
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   34 QELQDTLAKYKRLLSLARRSIEENQRQIAEKDALHAALRAQLETAQKAQRRDEAAAGIGA-EPLAMLRRVEEGGAQWVLLEY-------EGGGKGWKSFSNEAEVADFVRRDGAEPLAVPAASLPPERSEQV 405
            QE+++T  K KRLL++A+RSI+ ++++++EKD     LR   E ++ AQ R   +      +P  +L +V  GG  W L+EY       E     W  F +EAE+  +  R   EPL +P  SL P   E+V
Sbjct:   69 QEMEETETKLKRLLAMAKRSIDNSKQELSEKDEAIQNLRE--EVSRSAQTRHSWSVDASTRDPRQLLHKVAHGGLLWCLVEYANESEFDEAKEVAWHCFRDEAEIQAYANRASGEPLTLPDFSLTPYEVERV 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16351.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LI32_ECTSI4.670e-2656.06GRIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YNU9_9STRA4.870e-2048.82GRIP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S4D4P1_HETAK2.300e-1332.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482SXA9_9ARCH5.320e-1138.64Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6A3FS57_9STRA9.990e-1136.64GRIP domain-containing protein n=16 Tax=Phytophtho... [more]
V9EJ60_PHYPR2.150e-933.59GRIP domain-containing protein n=45 Tax=Phytophtho... [more]
A0A8K1CW38_PYTOL3.510e-933.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XWN8_9STRA3.740e-936.84GRIP domain-containing protein n=1 Tax=Pythium bra... [more]
H3GH33_PHYRM4.670e-933.59Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3R7KVI4_9STRA5.280e-934.85GRIP domain-containing protein n=3 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16351contigP-wetherbeei_contig16351:2..734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LI32
PFAMsGRIP
Model size608
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.99e-08
EggNOG OGs2CN6M@1|root,2QU6G@2759|Eukaryota
DescriptionGRIP domain
Cds size198
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.2988896-UTR-P-wetherbeei_contig16351:1..1861683186084.2988896-UTR-P-wetherbeei_contig16351:1..186Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16351 2..186 -
1683186084.3146374-UTR-P-wetherbeei_contig16351:384..4241683186084.3146374-UTR-P-wetherbeei_contig16351:384..424Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16351 385..424 -
1683186084.3223271-UTR-P-wetherbeei_contig16351:549..7341683186084.3223271-UTR-P-wetherbeei_contig16351:549..734Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16351 550..734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.3072598-CDS-P-wetherbeei_contig16351:186..3841683186084.3072598-CDS-P-wetherbeei_contig16351:186..384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16351 187..384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16351.1.1prot_P-wetherbeei_contig16351.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16351 187..384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16351.1.1

>prot_P-wetherbeei_contig16351.1.1 ID=prot_P-wetherbeei_contig16351.1.1|Name=mRNA_P-wetherbeei_contig16351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MLRRVEEGGAQWVLLEYEGGGKGWKSFSNEAEVADFVRRDGAEPLAVPAA
SLPPERSEQVSPGGR*
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mRNA from alignment at P-wetherbeei_contig16351:2..734-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16351.1.1 ID=mRNA_P-wetherbeei_contig16351.1.1|Name=mRNA_P-wetherbeei_contig16351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=733bp|location=Sequence derived from alignment at P-wetherbeei_contig16351:2..734- (Phaeothamnion wetherbeei SAG_119_79)
CCTCCTCCTCCGCCGCAGCAAGGAGAGTCAAATCAGGAGCTGCAGGACAC CCTCGCCAAATACAAGCGACTGCTGTCCTTGGCACGGCGAAGTATAGAAG AGAATCAGAGACAAATCGCCGAGAAGGATGCGCTGCACGCGGCTCTTCGC GCCCAGCTCGAGACTGCGCAAAAGGCGCAGAGGAGGTAAGGCTTTTGCTT TCGCCTCCTGTGCTTCTCTATGGAATTGCAAGCGTTGGCATTTGCAGCTT GTCCACGCACGTAATCATGAAATCCGTCGCCTTGAACGGAACTTGCTCGT GCTTTGCCAGGGATGAGGCCGCTGCCGGAATAGGAGCCGAGCCGCTGGCA ATGCTGCGGCGCGTGGAGGAAGGAGGCGCTCAGTGGGTGCTTTTGGAGTA TGAGGGCGGCGGAAAGGGCTGGAAGAGCTTCTCCAACGAAGCCGAAGTCG CGGACTTTGTCCGCCGCGACGGCGCGGAGCCGCTGGCAGTGCCCGCAGCG TCTCTTCCCCCAGAACGCTCCGAACAGGTGAGCCCAGGGGGCCGTTAACG GCGCGCACGGCCTTGCTTTGCTGCGGACGTCCTGAAATGCTGCGGTGACA GCAGGTTGTTAGCGCGGATAGCTGAAAGAAATACAACAGGATAAGATGCG GCTTGGCCGGGATAGACAGCTTGTTCGCTCTCAAACTTTTTGCACGCAGC CTCAGCGAATGCGAAAGGACAATTCGTAGCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16351:2..734-

>mRNA_P-wetherbeei_contig16351.1.1 ID=mRNA_P-wetherbeei_contig16351.1.1|Name=mRNA_P-wetherbeei_contig16351.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig16351:2..734- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGGCGCGTGGAGGAAGGAGGCGCTCAGTGGGTGCTTTTGGAGTA
TGAGGGCGGCGGAAAGGGCTGGAAGAGCTTCTCCAACGAAGCCGAAGTCG
CGGACTTTGTCCGCCGCGACGGCGCGGAGCCGCTGGCAGTGCCCGCAGCG
TCTCTTCCCCCAGAACGCTCCGAACAGGTGAGCCCAGGGGGCCGTTAA
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