mRNA_P-wetherbeei_contig16350.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16350.1.1
Unique NamemRNA_P-wetherbeei_contig16350.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: D8LRS4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS4_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 2.030e-69
Identity = 106/150 (70.67%), Postives = 125/150 (83.33%), Query Frame = 1
Query:    1 KPDRRRRGDLYLVLEYMDHDLAGLLDRRHDFRPEAIKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQLSDAPTDMTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV 450
            + DR RRG LY+VLEY++HDLAGLLD    F    +K LLRQLLE+L FIH+NK+VHRDIKCSNLL+D+  +LKLADFGLAR+LS+ P D+TNRVITLWYRPPELLLG+TRYGP VD WGVGCI AELI+ +PLFP KVE  QL+ IF+V
Sbjct:  101 RTDRGRRGSLYIVLEYLEHDLAGLLDLNITFSAVQMKALLRQLLEILAFIHDNKYVHRDIKCSNLLIDNNLQLKLADFGLARRLSEVPADLTNRVITLWYRPPELLLGATRYGPSVDCWGVGCIFAELIIGKPLFPTKVELEQLEAIFKV 250          
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: A0A835Z4S4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S4_9STRA)

HSP 1 Score: 219 bits (557), Expect = 1.030e-67
Identity = 100/142 (70.42%), Postives = 125/142 (88.03%), Query Frame = 1
Query:   28 LYLVLEYMDHDLAGLLDRRHDFRPEAIKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQL-SDAPTDMTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV 450
            L+LVLEY+DHDLAGLLD  + F P+AIK +++QLLEVLQ +HE+++VHRDIKCSN+LLD+ HRLKLADFGLAR+L  D    ++N+VITLWYRPPELLLG+ RYGPPVDMWGVGCI++ELI+Q+PL PGKVE  QL++IF+V
Sbjct:   79 LFLVLEYVDHDLAGLLDMHYCFSPQAIKMIIKQLLEVLQHMHEHRYVHRDIKCSNILLDNHHRLKLADFGLARRLCEDQDRQLSNKVITLWYRPPELLLGARRYGPPVDMWGVGCILSELILQKPLLPGKVELEQLEMIFKV 220          
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: A0A7S2R3L8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3L8_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.480e-56
Identity = 91/151 (60.26%), Postives = 116/151 (76.82%), Query Frame = 1
Query:   22 GDLYLVLEYMDHDLAGLLDRRHDFRPEAIKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQL--------SDAPTDMTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV 450
            G L+LVLE++DHDL GL+D R+DF+P  IKY+++QLL+VLQ++H  KFVHRD+KCSN+L+   +R+KLADFGLAR +        S A   +TN VITLWYRPPELLLG  +Y   VDMW  GCI+AELI+++PLFPG  E  QLDLIF+V
Sbjct:  113 GTLFLVLEFVDHDLTGLIDARYDFKPLEIKYIMKQLLDVLQYMHGKKFVHRDLKCSNILITRNYRVKLADFGLARSIEPVYTADKSSAERRLTNNVITLWYRPPELLLGQPKYTTSVDMWSAGCILAELILRKPLFPGHTELEQLDLIFRV 263          
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: D6PJ99_9ZZZZ (Protein kinase domain-containing protein n=2 Tax=environmental samples TaxID=151659 RepID=D6PJ99_9ZZZZ)

HSP 1 Score: 182 bits (461), Expect = 8.650e-55
Identity = 85/149 (57.05%), Postives = 109/149 (73.15%), Query Frame = 1
Query:   19 RGDLYLVLEYMDHDLAGLLDRRHDFRPEAIKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQLSDAPTD--------MTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLI 441
            +GDL+LVLEY+DHDLAGL+D R++F P  IK++++QL EVL++IH   F+HRD+KCSNLLL    +LKLADFGLAR +    T         +TN VITLWYRPPELLLG  +YG  VD+W  GCI+AELI++ PLF GK E  + + I
Sbjct:   88 QGDLFLVLEYVDHDLAGLIDERYEFTPTEIKHIMKQLFEVLKYIHGENFIHRDLKCSNLLLSHDMKLKLADFGLARCIEAPYTTNQAKELDKLTNTVITLWYRPPELLLGQKKYGRAVDIWSAGCILAELIIRHPLFQGKTEVRRFNRI 236          
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: A0A3B4WNA7_SERLL (Protein kinase domain-containing protein n=1 Tax=Seriola lalandi dorsalis TaxID=1841481 RepID=A0A3B4WNA7_SERLL)

HSP 1 Score: 181 bits (459), Expect = 4.840e-54
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 1
Query:   19 RGDLYLVLEYMDHDLAGLLDRRHDFRPEAIKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQLSDAPTDMTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV 450
            +G +Y+V+EY DHDL GL D  H F P  IK  ++QLLE + + H+N  +HRDIK SNLL++   +LKLADFGLAR   D     TNRVITLWYRPPELLLG T YGP +D+W  GCI+AEL++++P+ PG+ E  QLDL+F++
Sbjct:   82 KGSIYMVMEYCDHDLTGLSDSGHRFSPGQIKCYMKQLLEGICYCHKNHVLHRDIKGSNLLINESGQLKLADFGLARPFDDQSKAYTNRVITLWYRPPELLLGETHYGPAIDLWSAGCILAELLLRKPILPGRNEFEQLDLVFKL 225          
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: A0A7S3I884_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3I884_9SPIT)

HSP 1 Score: 180 bits (457), Expect = 5.070e-54
Identity = 83/145 (57.24%), Postives = 108/145 (74.48%), Query Frame = 1
Query:   19 RGDLYLVLEYMDHDLAGLLDRRHDFRPEAIKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQLSD-APTDMTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV 450
            +G +Y+V+EY DHDL GL D  H F P  IK  +RQLLE L + H N+ +HRDIK SNLL++   +LKLADFGLAR   D A    TNRVITLWYRPPELLLG+ +YGP +D+W  GCI+AEL++++P+ PG+ E  QLDL+F++
Sbjct:   94 KGSIYMVMEYCDHDLTGLSDMGHRFSPGQIKCYMRQLLEGLTYCHNNRILHRDIKGSNLLINETGQLKLADFGLARPFGDDANKQYTNRVITLWYRPPELLLGAMQYGPAIDLWSSGCILAELLLRKPILPGRNEFEQLDLVFKL 238          
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: R7Q522_CHOCR (Cyclin-dependent kinase C-1, CDKC-1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q522_CHOCR)

HSP 1 Score: 182 bits (461), Expect = 1.150e-52
Identity = 85/148 (57.43%), Postives = 108/148 (72.97%), Query Frame = 1
Query:   10 RRRRGDLYLVLEYMDHDLAGLLDRRH-DFRPEAIKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQLSDAPTDMTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV 450
            ++ +G +Y+V EYMDHDL GL+D     F    +K  + QLL  L++ H ++ +HRDIK SNLL+D+   LK+ADFGLAR   +A    TN VITLWYRPPELLLG+  YGP VDMW VGC++AEL+ ++PLFPGK EA QLDLIFQV
Sbjct:  111 KKPKGSIYMVFEYMDHDLTGLMDTPTVRFTEAQVKCYMSQLLSGLEYCHRHEVLHRDIKGSNLLIDNNGNLKIADFGLARSYGEAGRRYTNHVITLWYRPPELLLGANMYGPSVDMWSVGCLLAELLTRKPLFPGKAEAEQLDLIFQV 258          
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: A0A7S0IX93_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IX93_9EUKA)

HSP 1 Score: 177 bits (449), Expect = 1.600e-52
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 1
Query:   19 RGDLYLVLEYMDHDLAGLLDRRHDFRPEAIKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQLSDAPTDMTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV 450
            +G +Y+V+E+ DHDL GL D    F    IK  ++QLLE L + H+N+ +HRDIK SNLL++   +LKLADFGLAR   D     TNRVITLWYRPPELLLGS++YGP +DMW VGCI AEL++++P+ PG+ E  QL LIF++
Sbjct:  121 KGSIYMVMEFCDHDLTGLTDAGQRFTVGQIKCYMKQLLEGLAYCHKNRVLHRDIKGSNLLINDEGQLKLADFGLARPFDDQQRQYTNRVITLWYRPPELLLGSSQYGPSIDMWSVGCIFAELLLRKPILPGRDEFEQLTLIFRL 264          
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: A0A2V3IYW5_9FLOR (Cyclin-dependent kinase C-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYW5_9FLOR)

HSP 1 Score: 179 bits (454), Expect = 3.230e-52
Identity = 85/148 (57.43%), Postives = 108/148 (72.97%), Query Frame = 1
Query:   10 RRRRGDLYLVLEYMDHDLAGLLDRRHDFRPEA-IKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQLSDAPTDMTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV 450
            ++ +G +Y+V EYMDHDL GL+D       EA +K  + QLL  L++ H+   +HRDIK SNLL+D+   LK+ADFGLAR   +     TNRVITLWYRPPELLLG+  YGP VDMW VGC++AE+I ++PLFPGK EA QL+LIFQV
Sbjct:  111 KKPKGSIYMVFEYMDHDLTGLMDTPSIRFTEAHVKCYMMQLLSGLEYCHDRAVLHRDIKGSNLLIDNNGNLKIADFGLARPYGEPGRKYTNRVITLWYRPPELLLGANEYGPSVDMWSVGCLLAEMITRKPLFPGKDEAEQLELIFQV 258          
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Match: R1EA98_EMIHU (Protein kinase domain-containing protein n=4 Tax=Eukaryota TaxID=2759 RepID=R1EA98_EMIHU)

HSP 1 Score: 181 bits (459), Expect = 3.590e-52
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = 1
Query:   19 RGDLYLVLEYMDHDLAGLLDRRHDFRPEAIKYLLRQLLEVLQFIHENKFVHRDIKCSNLLLDSRHRLKLADFGLARQLSDAPTDMTNRVITLWYRPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV 450
            +G +Y+V+EY DHDL GL D  H F P  IK  ++QLLE + + H+N  +HRDIK SNLL++   +LKLADFGLAR   D     TNRVITLWYRPPELLLG T YGP +D+W  GCI+AEL++++P+ PG+ E  QLDL+F++
Sbjct:  101 KGSIYMVMEYCDHDLTGLSDSGHRFSPGQIKCYMKQLLEGICYCHKNHVLHRDIKGSNLLINESGQLKLADFGLARPFDDQSKAYTNRVITLWYRPPELLLGETHYGPAIDLWSAGCILAELLLRKPILPGRNEFEQLDLVFKL 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16350.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRS4_ECTSI2.030e-6970.67Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835Z4S4_9STRA1.030e-6770.42Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2R3L8_9STRA2.480e-5660.26Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
D6PJ99_9ZZZZ8.650e-5557.05Protein kinase domain-containing protein n=2 Tax=e... [more]
A0A3B4WNA7_SERLL4.840e-5456.25Protein kinase domain-containing protein n=1 Tax=S... [more]
A0A7S3I884_9SPIT5.070e-5457.24Hypothetical protein (Fragment) n=2 Tax=Choreotric... [more]
R7Q522_CHOCR1.150e-5257.43Cyclin-dependent kinase C-1, CDKC-1 n=1 Tax=Chondr... [more]
A0A7S0IX93_9EUKA1.600e-5256.25Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A2V3IYW5_9FLOR3.230e-5257.43Cyclin-dependent kinase C-1 n=1 Tax=Gracilariopsis... [more]
R1EA98_EMIHU3.590e-5256.25Protein kinase domain-containing protein n=4 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16350contigP-wetherbeei_contig16350:227..1478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRS4
Preferred nameCDKC1
PFAMsPkinase
Model size462
Max annot lvl2759|Eukaryota
KEGG koko:K08819
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.32e-70
EggNOG OGsKOG0600@1|root,KOG0600@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_002250.1
EC2.7.11.22,2.7.11.23
Descriptioncyclin-dependent protein serine/threonine kinase activity
Cds size462
COG categoryG
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.2498915-CDS-P-wetherbeei_contig16350:226..4661683186084.2498915-CDS-P-wetherbeei_contig16350:226..466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16350 227..466 -
1683186084.2667978-CDS-P-wetherbeei_contig16350:857..9901683186084.2667978-CDS-P-wetherbeei_contig16350:857..990Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16350 858..990 -
1683186084.2737892-CDS-P-wetherbeei_contig16350:1389..14781683186084.2737892-CDS-P-wetherbeei_contig16350:1389..1478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16350 1390..1478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16350.1.1prot_P-wetherbeei_contig16350.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16350 227..1478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16350.1.1

>prot_P-wetherbeei_contig16350.1.1 ID=prot_P-wetherbeei_contig16350.1.1|Name=mRNA_P-wetherbeei_contig16350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
KPDRRRRGDLYLVLEYMDHDLAGLLDRRHDFRPEAIKYLLRQLLEVLQFI
HENKFVHRDIKCSNLLLDSRHRLKLADFGLARQLSDAPTDMTNRVITLWY
RPPELLLGSTRYGPPVDMWGVGCIVAELIVQRPLFPGKVEAAQLDLIFQV
RSF*
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mRNA from alignment at P-wetherbeei_contig16350:227..1478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16350.1.1 ID=mRNA_P-wetherbeei_contig16350.1.1|Name=mRNA_P-wetherbeei_contig16350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1252bp|location=Sequence derived from alignment at P-wetherbeei_contig16350:227..1478- (Phaeothamnion wetherbeei SAG_119_79)
AAGCCGGACCGGCGGCGACGCGGCGACCTGTACCTTGTGCTCGAGTACAT GGACCACGACCTCGCGGGCCTGCTCGACCGCCGCCATGAGTGAGTTGTCG GAGTTTGCTGCTGCGGGTTGGCCTCTTTCATTTGCCGCCTGATGCAGATT TCATGTCCCCACCTGCTTGTTCACACCCTGTGGGAAGGTGCATGTTTCCT TCCCATTATGTTTCTGATAAAGCCTATTCTAATCTGCGTTCTATGGCTGT GTAAGTTTTCCTGGTTAGGGGCTCGCTGGTCCCTTGTATATTGTGATGCC AACCGTATCAGGAAGTTGCAGGGTTTAGTTCGTCTTCCCTTTGATGCGCG TCTTCCAGCCGCGGCGGCGACCGCAATTGGTTCTGTGAAGCCGGCGTTTG CGTCCGGCACGCTCGTTCTTTTGTGTAAACGTATGCGTTGTTCTGCCAAC TGTCCGGCTCGCGGTGCAATTCGCGGCCGGAATCGCAGCTTTCGGCCGGA GGCGATAAAATACTTGCTGCGACAGCTGCTGGAAGTGCTGCAGTTCATCC ACGAAAACAAGTTCGTCCACCGCGACATCAAGTGCTCCAACCTCCTTCTC GACAGCCGCCACCGCCTCAAGGTGGGTGTAGAAGAAAAGGCTCTGAATTT TCTGTTTCTTGTTGGTTGTTGTTCTTTTCTGGCAGTCTGAAGGGTTCATT GCTTGTGTTTTTGCTTTCAACGGATGCAACTTTCCCAACTTGCGGTTTTG CTGAATTCTTTGGAGGCGTCACGTAGCCCTTGGAGCCGAACAGTTGTTTA GTTCGCTTCATCAGAAGTCTTTCATCTCCAACTGTTCTTGATGTGTTAAG CGGAAGGAGAGAATGGGCCCTGGAAGCCAATGAATACCCTTCGTTCTCCC TGAGCTTCGATTTCATCCAAATTTCCTCTCCTCTCCCACACTCCGTCGTC ACCACCACGTTTCCATTAATTGCGTCGGTTACTATACATTGCGTCACAAA CTATTGGGACAGCTGGCGGACTTCGGGCTGGCGCGTCAGCTGTCCGATGC CCCCACCGACATGACCAACCGCGTCATCACCCTCTGGTATCGCCCGCCGG AGCTGCTGCTGGGGTCGACCCGCTACGGCCCGCCGGTGGACATGTGGGGC GTCGGCTGCATCGTGGCGGAACTCATCGTTCAGCGGCCGCTCTTTCCGGG CAAGGTCGAGGCAGCGCAGCTCGATCTGATATTCCAGGTGAGGAGTTTCT GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16350:227..1478-

>mRNA_P-wetherbeei_contig16350.1.1 ID=mRNA_P-wetherbeei_contig16350.1.1|Name=mRNA_P-wetherbeei_contig16350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig16350:227..1478- (Phaeothamnion wetherbeei SAG_119_79)
AAGCCGGACCGGCGGCGACGCGGCGACCTGTACCTTGTGCTCGAGTACAT
GGACCACGACCTCGCGGGCCTGCTCGACCGCCGCCATGACTTTCGGCCGG
AGGCGATAAAATACTTGCTGCGACAGCTGCTGGAAGTGCTGCAGTTCATC
CACGAAAACAAGTTCGTCCACCGCGACATCAAGTGCTCCAACCTCCTTCT
CGACAGCCGCCACCGCCTCAAGCTGGCGGACTTCGGGCTGGCGCGTCAGC
TGTCCGATGCCCCCACCGACATGACCAACCGCGTCATCACCCTCTGGTAT
CGCCCGCCGGAGCTGCTGCTGGGGTCGACCCGCTACGGCCCGCCGGTGGA
CATGTGGGGCGTCGGCTGCATCGTGGCGGAACTCATCGTTCAGCGGCCGC
TCTTTCCGGGCAAGGTCGAGGCAGCGCAGCTCGATCTGATATTCCAGGTG
AGGAGTTTCTGA
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