mRNA_P-wetherbeei_contig16345.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16345.1.1
Unique NamemRNA_P-wetherbeei_contig16345.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: A0A6H5KKC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC6_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.640e-32
Identity = 62/115 (53.91%), Postives = 84/115 (73.04%), Query Frame = 1 
Query:    1 VIGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADAKVTPEECRRLVAARHELGIDAETHLEV 345
            V+GSYE+RIRNFS+ ERVFEFFASVT E GTFMTP DF R++TP+Q R G +VGS+N K+ FQAK   P  ++   Y ++++ +L D++VTP+E + ++ AR    I AE HL V
Sbjct:   69 VMGSYEDRIRNFSSAERVFEFFASVTNEKGTFMTPADFARSITPYQHRVGEKVGSENPKYRFQAKHHGPTASELEGYKKVLKAILEDSRVTPQEVKDMLDARERFNITAEAHLRV 183
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: D7FPD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD2_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 5.270e-28
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    4 IGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADAKVT 273
            +GSYE+RIRNFS+ ERVFEFFASVT E GTFMTP DF R++TP+Q R G +VGS+N K+ FQAK   P  ++   Y ++++ +L D+++T
Sbjct:    1 MGSYEDRIRNFSSAERVFEFFASVTNEKGTFMTPADFARSITPYQHRIGEKVGSENPKYRFQAKHHGPTASELKGYKKVLKAILEDSRIT 90
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: A0A2D4CJN2_PYTIN (EF-hand domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJN2_PYTIN)

HSP 1 Score: 109 bits (272), Expect = 1.350e-26
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:    4 IGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADAK-VTPEECRRLVAARHELGIDAETHLE 342
            IG+YENR+R FS+PERVFE+F+SV  +   +MT ED  RA+TP+  R+GA + S N+KFNFQA   KP+    AEY   V+++L D + VTP +   L+  R E G+D ETH++
Sbjct:   45 IGNYENRLRRFSSPERVFEYFSSVEIDKQFYMTREDLARAVTPYTYRSGAPLTSPNYKFNFQAITTKPSKXTIAEYTRRVKDLLIDRQNVTPHDVLALLQFREENGVDFETHVK 158
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: A0A8K1C5U7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5U7_PYTOL)

HSP 1 Score: 103 bits (258), Expect = 1.900e-24
Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 1 
Query:    1 VIGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADAK-VTPEECRRLVAARHELGIDAETHLE 342
            ++G+YENR+R FS+PERVFE+F+SV      FMT ED  RA+TP+  R+GA + SKN KFNFQA+  KP+      Y + V+ +L + + VT ++ + L+A R +  ID ETH++
Sbjct:   54 MVGNYENRLRKFSSPERVFEYFSSVELNKEYFMTREDLARAITPYTYRSGAPLASKNTKFNFQARSNKPSKDMVEAYTQHVKHLLLEKQNVTTQDVQALLAFREKHNIDFETHVK 168
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: M4BLV1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BLV1_HYAAE)

HSP 1 Score: 102 bits (255), Expect = 2.280e-23
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:    4 IGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADA-KVTPEECRRLVAARHELGIDAETHLE 342
            IG+YENR+R FS+PERVF +F+SV   D  FMT +D  RA+TPF  R GA + SKN +FN +A  AK + A A EY   V+++L ++  VTP E ++L+A R E  +D ETH++
Sbjct:   50 IGNYENRLRRFSSPERVFAYFSSVEINDEYFMTRDDLARAVTPFTYRHGAPLLSKNPQFNAKASAAKTSKAVADEYLRRVQKILLESDNVTPVEVKKLLAFRDEQRVDFETHVK 163
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: A0A5D6XKD6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKD6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.140e-22
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:    4 IGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADA-KVTPEECRRLVAARHELGIDAETHLE 342
            +GSYENR+R FS+PERVFE+F+SV  +   FMT +D  RA+TP+  R+GA + SKN KFN +A   KPA     +Y   ++E+L +   VTP +   L+A R E  ID ETH++
Sbjct:   45 VGSYENRLRKFSSPERVFEYFSSVEIDRHFFMTRDDLARAITPYTFRSGAPLASKNAKFNPKALATKPASEAVDKYVAQLKELLLETVDVTPADVSALLAFRDEHQIDFETHVK 158
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: A0A836CPN4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPN4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.720e-21
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:   97 MTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADAKVTPEECRRLVAARHELGIDAETHLE 342
            MTP+DF R++T ++ R G ++GSKNFK+NFQA++  P   Q  EY  L++EVLAD +VT EEC RLVAAR  L IDA +HLE
Sbjct:    1 MTPDDFARSITNYKGRPGEDLGSKNFKYNFQARYLAPKREQMDEYVALLQEVLADRRVTKEECARLVAARESLSIDAPSHLE 82
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: A0A3M6VN81_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VN81_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.940e-21
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:    4 IGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADAK-VTPEECRRLVAARHELGIDAETHLE 342
            IG+YENR+R FS+PERVFE+F+SV  E   FMT  D  RA+TP+  R GA + SKN KFNF+A   K +   A EY   V+++L D + VT  +   L+A R E  +D ETH++
Sbjct:   84 IGNYENRLRKFSSPERVFEYFSSVEIEKQYFMTRNDLARAVTPYTYRHGAPLSSKNPKFNFKASGDKNSKEVAEEYLRRVQKLLIDKENVTRTQVDELLAFRDEQHVDFETHVK 197
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: A0A6A4A4C1_9STRA (EF-hand domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4A4C1_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.180e-21
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:    4 IGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADA-KVTPEECRRLVAARHELGIDAETHLE 342
            +GSYENR+R FSAPERVFE+F+SV  +   FMT +D  RA+TPF  R GA + SKN KFN +A+  K     A EY   V+ +L D   VT ++ ++L+A +    +D ETH++
Sbjct:   56 VGSYENRLRKFSAPERVFEYFSSVEIDRQFFMTRDDLARAVTPFTYRHGAPLASKNPKFNAKARDDKSPQDVADEYQRRVQRLLIDKDNVTNQDVQQLLAFKDAQHVDFETHVK 169
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BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Match: A0A662XYI0_9STRA (EF-hand domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYI0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.070e-21
Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:    4 IGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAGAEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADAK-VTPEECRRLVAARHELGIDAETH 336
            +G+YENR+R FS+PERVFE+F+SV  +   FMT +D  RA+TP+  R GA + SKN KFN +A   K     A EY  LVR+VL D   VTP +   L+  R    +D E H
Sbjct:   20 VGNYENRLRKFSSPERVFEYFSSVEIDKQFFMTRDDLARAVTPYTYRHGAPLASKNPKFNAKASVQKNPKDVAEEYLRLVRKVLLDTPHVTPGDVAALLQFRDGHRVDFEMH 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16345.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKC6_9PHAE1.640e-3253.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPD2_ECTSI5.270e-2855.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4CJN2_PYTIN1.350e-2649.12EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A8K1C5U7_PYTOL1.900e-2446.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BLV1_HYAAE2.280e-2349.12Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A5D6XKD6_9STRA3.140e-2247.37Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A836CPN4_9STRA1.720e-2157.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3M6VN81_9STRA1.940e-2148.25Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A6A4A4C1_9STRA5.180e-2146.49EF-hand domain-containing protein n=3 Tax=Phytopht... [more]
A0A662XYI0_9STRA8.070e-2147.32EF-hand domain-containing protein n=2 Tax=Nothophy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16345contigP-wetherbeei_contig16345:351..1032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog272952.HpaP807386
PFAMsEF-hand_5,EF-hand_6,EF-hand_7,EF-hand_8
Model size345
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.75e-24
EggNOG OGsKOG2643@1|root,KOG2643@2759|Eukaryota,3QF2G@4776|Peronosporales
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-15_003840.1
DescriptionEF-hand domain
Cds size345
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186084.149945-CDS-P-wetherbeei_contig16345:350..5541683186084.149945-CDS-P-wetherbeei_contig16345:350..554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16345 351..554 -
1683186084.1603239-CDS-P-wetherbeei_contig16345:891..10321683186084.1603239-CDS-P-wetherbeei_contig16345:891..1032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16345 892..1032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16345.1.1prot_P-wetherbeei_contig16345.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16345 351..1032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16345.1.1

>prot_P-wetherbeei_contig16345.1.1 ID=prot_P-wetherbeei_contig16345.1.1|Name=mRNA_P-wetherbeei_contig16345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
VIGSYENRIRNFSAPERVFEFFASVTTEDGTFMTPEDFVRALTPFQQRAG
AEVGSKNFKFNFQAKFAKPAPAQAAEYAELVREVLADAKVTPEECRRLVA
ARHELGIDAETHLEV
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mRNA from alignment at P-wetherbeei_contig16345:351..1032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16345.1.1 ID=mRNA_P-wetherbeei_contig16345.1.1|Name=mRNA_P-wetherbeei_contig16345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=682bp|location=Sequence derived from alignment at P-wetherbeei_contig16345:351..1032- (Phaeothamnion wetherbeei SAG_119_79)
GTCATTGGGAGCTACGAGAATCGCATTCGCAACTTCAGCGCCCCCGAGCG
CGTGTTCGAGTTCTTCGCGTCGGTTACAACGGAGGATGGAACGTTCATGA
CTCCCGAAGATTTCGTGCGTGCTCTCACGCCGTTCCAACAGGTGACTTAT
CGTCTAAAGCTTTTTGGACACCAAAATACCCGCTTCCCCTTTCACCTTTA
TCGTTACACCGATCGTACATTCGCTTTTTGATTGATTGATTGATTGATGC
CTCTCCTTTTTCGAAGACGCCGATTTTCATGTGGGTTTACGAAGCTTCCA
CAGAGAACTCTTCTGAACAAAAGCTGCCTCCGCCCGCATTCTCTCTCCAC
AAAGCGGCAGAGGTCGTAATTCCCATGCAGAGTTCTGACAGTGAAGATAC
AACACCTGTGATTACGGACTTACCACACAAACAACCCACGCTTCCCCGCC
GCCGTCCCATTGCCGCCTGTCCCAACAGCGCGCCGGCGCTGAGGTCGGCA
GCAAGAACTTCAAGTTCAACTTCCAGGCCAAGTTCGCCAAGCCGGCGCCG
GCCCAGGCCGCCGAGTACGCGGAGCTGGTGCGGGAAGTGCTGGCGGACGC
CAAGGTGACGCCGGAAGAGTGCCGCCGGCTGGTGGCGGCGCGGCACGAGC
TCGGCATAGACGCCGAGACGCATCTCGAGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16345:351..1032-

>mRNA_P-wetherbeei_contig16345.1.1 ID=mRNA_P-wetherbeei_contig16345.1.1|Name=mRNA_P-wetherbeei_contig16345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig16345:351..1032- (Phaeothamnion wetherbeei SAG_119_79)
GTCATTGGGAGCTACGAGAATCGCATTCGCAACTTCAGCGCCCCCGAGCG
CGTGTTCGAGTTCTTCGCGTCGGTTACAACGGAGGATGGAACGTTCATGA
CTCCCGAAGATTTCGTGCGTGCTCTCACGCCGTTCCAACAGCGCGCCGGC
GCTGAGGTCGGCAGCAAGAACTTCAAGTTCAACTTCCAGGCCAAGTTCGC
CAAGCCGGCGCCGGCCCAGGCCGCCGAGTACGCGGAGCTGGTGCGGGAAG
TGCTGGCGGACGCCAAGGTGACGCCGGAAGAGTGCCGCCGGCTGGTGGCG
GCGCGGCACGAGCTCGGCATAGACGCCGAGACGCATCTCGAGGTA
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