mRNA_P-wetherbeei_contig16343.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI) HSP 1 Score: 128 bits (321), Expect = 6.380e-32 Identity = 68/122 (55.74%), Postives = 89/122 (72.95%), Query Frame = 1
Query: 7 LVWSLMNKAAAFRRDGNKFGILSAVAP-GVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTV--SAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
L S+MNKA AF+ +G FG+ SAV P G KGF+YLEA NEP V+ +I+G+ IYHSKLR VPI DM VL+V + +A+P+R+ Q++RL R P Y DDLA+V E+ G RAVV +IPR+D
Sbjct: 174 LCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKP-YTDDLAKVVEVLAGGERAVVQFIPRID 294
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A6H5JFI1_9PHAE (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI1_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.890e-30 Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 1
Query: 4 QLVWSLMNKAAAFRRDGNKFGILSAVAP-GVKGFIYLEAMNEPDVR------RSISGMSKIYHSKLRMVPIRDMPNVLTV--SAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
QL S+MNKA AF+ +G FG+ SAV P G KGF+YLEA NEP V+ R + G+ IYHSKLR VPI DM VL+V + +A+P+R+ Q++RL R P Y DDLA+V E+ G RAVV +IPR+D
Sbjct: 25 QLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGVRGVCLIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKP-YTDDLAKVVEVLAGGERAVVQFIPRID 152
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A7S1TVX0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVX0_9STRA) HSP 1 Score: 105 bits (263), Expect = 4.100e-24 Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = 1
Query: 7 LVWSLMNKAAAFRRDGNKFGILSAVAPGVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKAR-PLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
+V +M+KA A R+GN GI SA+ G K I++E +EP V+ ++ G++ +Y K+++VP+ M VL V+ +A+ PLREGQ+VRL R +YK DLA+V E+ D GS+A+V +PRLD
Sbjct: 32 IVTKIMSKAIAEAREGNDIGIESAMTTGSKEIIFVEGRSEPKVKAALGGINNVYMRKIKLVPLGQMTEVLNVARRAKKPLREGQWVRLKRG-VYKGDLAKVLEMVDGGSKALVQLVPRLD 150
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A830HJZ3_9CHLO (Transcription elongation factor SPT5 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HJZ3_9CHLO) HSP 1 Score: 84.3 bits (207), Expect = 1.520e-16 Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 1 QQLVWSLMNKAAAFRRDGNKFGILSAVAPG-VKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKA-RPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
+++++ LM K F G I S + +KG IY+EAM E VR + G IY SK+R+VPI +M V+TV +A +R GQ+VR+ R YKDDLARV E+ ++ + V +PRLD
Sbjct: 267 REVIFQLMQKCVDFASRGTPLMIYSVTSRDELKGHIYVEAMKESHVRDATRGFHFIYQSKVRLVPIDEMVEVVTVVRRASESIRPGQWVRM-RTGAYKDDLARVAEIDEAVGQITVQLVPRLD 388
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A0L0DWS7_THETB (Transcription elongation factor SPT5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DWS7_THETB) HSP 1 Score: 83.2 bits (204), Expect = 3.730e-16 Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 1 QQLVWSLMNKAAAFRRDGNKFGILSAVA-PGVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
++LV +LM K A + G + GI S + ++G+ ++EA E V+ +ISG+ + S + ++P+++M + L V+A+ LR+ +VR+ R Y+ DLAR+ L DSGSRAVV IPRLD
Sbjct: 118 RKLVLALMYKFADKQSRGKRMGITSVICRDNLRGYFFVEARREDTVKAAISGLRGVRQSSVTILPLKEMVDTLEVTAQDVTLRKDAWVRMKRGQ-YRGDLARIVRLDDSGSRAVVKLIPRLD 238
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A6A5Y9T8_9PLEO (Transcription elongation factor SPT5 n=1 Tax=Aaosphaeria arxii CBS 175.79 TaxID=1450172 RepID=A0A6A5Y9T8_9PLEO) HSP 1 Score: 82.8 bits (203), Expect = 5.220e-16 Identity = 44/124 (35.48%), Postives = 77/124 (62.10%), Query Frame = 1
Query: 1 QQLVWSLMNKAAAFRRDGNKFGILSAVAPG--VKGFIYLEAMNEPDVRRSISGMSKIYHSKLRM-VPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
+++V +L K + R G + G+ SA G + G++YLEA + D+ I G+ I+ S+ ++ + +++ P++L K PL EG++VR++RPPLY+ DLA+V E++ +G V +PRLD
Sbjct: 217 REIVMALTKKIDDYARAGRQIGVYSAFERGGTMTGYMYLEADAKQDMLSLIDGVQNIFMSQPQIAIEVKERPDLLR-KRKRTPLEEGKFVRMVRPPLYRGDLAKVVEVHSNGLDCTVQLVPRLD 339
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A197JXB0_9FUNG (Transcription elongation factor SPT5 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JXB0_9FUNG) HSP 1 Score: 80.1 bits (196), Expect = 4.640e-15 Identity = 46/122 (37.70%), Postives = 74/122 (60.66%), Query Frame = 1
Query: 1 QQLVWSLMNKAAAFRRDGNKFGILSAVA-PGVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
+ LV+SLM K I +A + +KG++Y+E M + +V+ +++G++ ++ SKL +VPI++M +VL V K LR G +VR+ R Y DLA++ ++ DSG A V IPRLD
Sbjct: 208 KDLVFSLMRKFFDTEYSAQPLEISAAFSRESLKGYVYIECMRQANVQAALNGLNNVFASKLTLVPIKEMTDVLKVRHKESDLRPGTWVRVKRGK-YAMDLAQILDIADSGDTAKVKLIPRLD 328
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: G9N2I6_HYPVG (Transcription elongation factor SPT5 (Fragment) n=16 Tax=Trichoderma TaxID=5543 RepID=G9N2I6_HYPVG) HSP 1 Score: 79.7 bits (195), Expect = 6.250e-15 Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 1 QQLVWSLMNKAAAFRRDGNKFGILSAVAPG-----VKGFIYLEAMNEPDVRRSISGMSKIY-HSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
+++V S+M + R ++ I +A G +K F+Y+E + D+ ++ G+ +Y HSKL +V I+DMP +L V+ K L G +VRL RPP + DLA+V ++ ++G A V +IPRLD
Sbjct: 172 REVVMSIMKRVEERRGTKDELAITAAFERGGPDSVMKSFVYVETQRQTDILVALDGILNVYPHSKLTLVDIKDMPELLRVT-KTPTLEPGAWVRLRRPPKHSGDLAQVIDVTENGLEARVRFIPRLD 297
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A0M8N1Q7_9HYPO (Transcription elongation factor SPT5 n=1 Tax=Escovopsis weberi TaxID=150374 RepID=A0A0M8N1Q7_9HYPO) HSP 1 Score: 79.7 bits (195), Expect = 6.270e-15 Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 1 QQLVWSLMNKAAAFRRDGNKFGILSAVAPG-----VKGFIYLEAMNEPDVRRSISGMSKIY-HSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
++++ S+M + R ++ I +A G +K FIY+E + D+ ++ G+ +Y HSKL +V I+DMP +L V+ K L G +VRL RPP + DLA+V ++ ++G A V +IPRLD
Sbjct: 241 REVIMSIMKRVEERRGTKDELAITAAFERGGPDSVMKSFIYVETRRQTDILVALDGLLNVYPHSKLTLVDIKDMPELLRVT-KTPTLEPGAWVRLRRPPKHSGDLAQVLDVTENGLEARVRFIPRLD 366
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Match: A0A0L0VIV0_9BASI (Chromatin elongation factor SPT5 n=4 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0VIV0_9BASI) HSP 1 Score: 79.7 bits (195), Expect = 6.340e-15 Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 1
Query: 1 QQLVWSLMNKAAAFRRDGNKFGILSAV-APGVKGFIYLEAMNEPDVRRSISGMSKIYHSKLRMVPIRDMPNVLTVSAKARPLREGQYVRLIRPPLYKDDLARVEELYDSGSRAVVAYIPRLD 363
+++V SL K + + I+SA +KG+IY+EA E DVR +I G +Y S+ RMVP+ +MP++L + P+ G +VR+ R Y DLA+V E+ ++G + ++PR+D
Sbjct: 197 KEIVASLFRKCEVHYKTAQELRIISAFYRDSLKGYIYVEARLELDVREAIQGFVGVYKSEFRMVPLEEMPDLLRTKKRETPIVPGGWVRIKRGK-YNGDLAQVLEVLENGDEVGLRFVPRID 317 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16343.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16343.1.1 >prot_P-wetherbeei_contig16343.1.1 ID=prot_P-wetherbeei_contig16343.1.1|Name=mRNA_P-wetherbeei_contig16343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp MNKAAAFRRDGNKFGILSAVAPGVKGFIYLEAMNEPDVRRSISGMSKIYHback to top mRNA from alignment at P-wetherbeei_contig16343:476..1482+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16343.1.1 ID=mRNA_P-wetherbeei_contig16343.1.1|Name=mRNA_P-wetherbeei_contig16343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1007bp|location=Sequence derived from alignment at P-wetherbeei_contig16343:476..1482+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16343:476..1482+ >mRNA_P-wetherbeei_contig16343.1.1 ID=mRNA_P-wetherbeei_contig16343.1.1|Name=mRNA_P-wetherbeei_contig16343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig16343:476..1482+ (Phaeothamnion wetherbeei SAG_119_79)back to top |